@manuscripts/transform 1.5.5 → 1.5.7-LEAN-3030

package/dist/cjs/transformer/decode.js

@@ -34,6 +34,7 @@ const json_schema_1 = require("@manuscripts/json-schema");
 const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../errors");
+const utils_1 = require("../lib/utils");
 const schema_1 = require("../schema");
 const builders_1 = require("./builders");
 const highlight_markers_1 = require("./highlight-markers");
@@ -63,18 +64,42 @@ exports.sortSectionsByPriority = sortSectionsByPriority;
 const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Section).sort(exports.sortSectionsByPriority);
 const getAffiliations = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Affiliation);
 const getContributors = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Contributor);
+const getKeywordElements = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordsElement);
+const getKeywordGroups = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.KeywordGroup);
+const getKeywords = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Keyword);
+const getTitles = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Titles)[0];
 const isManuscriptNode = (model) => model !== null;
 exports.isManuscriptNode = isManuscriptNode;
-const isParagraphElement = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphElement);
 const isFootnote = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote);
-const isKeyword = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Keyword);
-const isKeywordsSection = (model) => model.category === 'MPSectionCategory:keywords';
-const isAffiliationsSection = (model) => model.category === 'MPSectionCategory:affiliations';
-const isContributorsSection = (model) => model.category === 'MPSectionCategory:contributors';
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
 class Decoder {
+    createTitleNode() {
+        const titles = getTitles(this.modelMap) || (0, builders_1.buildTitles)();
+        return this.decode(titles);
+    }
+    createAffiliationsNode() {
+        const affiliations = getAffiliations(this.modelMap)
+            .map((a) => this.decode(a))
+            .filter(Boolean);
+        return schema_1.schema.nodes.affiliations.createAndFill({}, affiliations);
+    }
+    createContributorsNode() {
+        const contributors = getContributors(this.modelMap)
+            .map((c) => this.decode(c))
+            .filter(Boolean);
+        return schema_1.schema.nodes.contributors.createAndFill({}, contributors);
+    }
+    createKeywordsNode() {
+        const elements = getKeywordElements(this.modelMap)
+            .map((e) => this.decode(e))
+            .filter(Boolean);
+        return schema_1.schema.nodes.keywords.createAndFill({}, [
+            schema_1.schema.nodes.section_title.create({}, schema_1.schema.text('Keywords')),
+            ...elements,
+        ]);
+    }
     createMetaSectionNode() {
         const commentListNode = this.createCommentListNode();
         return schema_1.schema.nodes.meta_section.createAndFill({}, [
@@ -86,54 +111,51 @@ class Decoder {
             ...this.comments.values(),
         ]);
     }
-    handleMissingRootSectionNodes(rootSectionNodes) {
-        if (!rootSectionNodes.find((node) => node.type.name === 'affiliations_section')) {
-            this.createAffiliationSectionNode(rootSectionNodes);
-        }
-        if (!rootSectionNodes.find((node) => node.type.name === 'contributors_section')) {
-            this.createContributorSectionNode(rootSectionNodes);
-        }
-    }
-    createAffiliationSectionNode(rootSectionNodes) {
-        const affiliationNodes = getAffiliations(this.modelMap)
-            .map((affiliation) => this.decode(affiliation))
-            .filter(Boolean);
-        if (affiliationNodes.length) {
-            const node = schema_1.schema.nodes.affiliations_section.createAndFill({
-                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }, affiliationNodes);
-            rootSectionNodes.unshift(node);
-        }
-    }
-    createContributorSectionNode(rootSectionNodes) {
-        const contributorNodes = getContributors(this.modelMap)
-            .map((contributor) => this.decode(contributor))
-            .filter(Boolean);
-        if (contributorNodes.length) {
-            const node = schema_1.schema.nodes.contributors_section.createAndFill({
-                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }, contributorNodes);
-            rootSectionNodes.unshift(node);
-        }
-    }
-    createTitleNode() {
-        const titles = (0, exports.getModelsByType)(this.modelMap, json_schema_1.ObjectTypes.Titles)[0] ||
-            (0, builders_1.buildTitles)();
-        return this.decode(titles);
-    }
     createRootSectionNodes() {
-        let rootSections = getSections(this.modelMap).filter((section) => !section.path || section.path.length <= 1);
+        let rootSections = getSections(this.modelMap)
+            .filter((section) => !section.path || section.path.length <= 1)
+            .filter((section) => section.category !== 'MPSectionCategory:contributors' &&
+            section.category !== 'MPSectionCategory:affiliations' &&
+            section.category !== 'MPSectionCategory:keywords');
         rootSections = this.addGeneratedLabels(rootSections);
-        const rootSectionNodes = rootSections
+        const sectionGroups = (0, utils_1.groupBy)(rootSections, (sec) => {
+            var _a;
+            return (0, section_category_1.chooseCoreSectionBySection)((_a = sec.category) !== null && _a !== void 0 ? _a : '');
+        });
+        this.ensureCoreSectionsExist(sectionGroups);
+        const absSectionNode = sectionGroups['MPSectionCategory:abstracts']
+            .map(this.decode)
+            .filter(exports.isManuscriptNode);
+        const bodySectionNodes = sectionGroups['MPSectionCategory:body']
+            .map(this.decode)
+            .filter(exports.isManuscriptNode);
+        const backmatterSectionNodes = sectionGroups['MPSectionCategory:backmatter']
             .map(this.decode)
             .filter(exports.isManuscriptNode);
-        this.handleMissingRootSectionNodes(rootSectionNodes);
-        if (!rootSectionNodes.length) {
-            rootSectionNodes.push(schema_1.schema.nodes.section.createAndFill({
-                id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
-            }));
+        const abstractCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.abstracts, absSectionNode);
+        const bodyCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.body, bodySectionNodes);
+        const backmatterCoreSectionNodes = this.createAndFill(schema_1.schema.nodes.backmatter, backmatterSectionNodes);
+        return {
+            abstracts: abstractCoreSectionNodes,
+            body: bodyCoreSectionNodes,
+            backmatter: backmatterCoreSectionNodes,
+        };
+    }
+    ensureCoreSectionsExist(coreSections) {
+        if (!coreSections['MPSectionCategory:abstracts']) {
+            coreSections['MPSectionCategory:abstracts'] = [];
+        }
+        if (!coreSections['MPSectionCategory:body']) {
+            coreSections['MPSectionCategory:body'] = [];
         }
-        return rootSectionNodes;
+        if (!coreSections['MPSectionCategory:backmatter']) {
+            coreSections['MPSectionCategory:backmatter'] = [];
+        }
+    }
+    createAndFill(nodeType, content) {
+        return nodeType.createAndFill({
+            id: (0, id_1.generateNodeID)(nodeType),
+        }, content);
     }
     createCommentsNode(model) {
         const comments = [];
@@ -339,19 +361,34 @@ class Decoder {
             },
             [json_schema_1.ObjectTypes.KeywordsElement]: (data) => {
                 const model = data;
-                const keywordGroups = this.getKeywordGroups();
+                const keywordGroups = getKeywordGroups(this.modelMap).map((k) => this.decode(k));
                 return schema_1.schema.nodes.keywords_element.create({
                     id: model._id,
                     paragraphStyle: model.paragraphStyle,
                 }, keywordGroups);
             },
+            [json_schema_1.ObjectTypes.KeywordGroup]: (data) => {
+                const keywordGroup = data;
+                const keywords = getKeywords(this.modelMap)
+                    .filter((k) => k.containedGroup === keywordGroup._id)
+                    .map((k) => this.decode(k));
+                const comments = this.createCommentsNode(keywordGroup);
+                comments.forEach((c) => this.comments.set(c.attrs.id, c));
+                return schema_1.schema.nodes.keyword_group.create({
+                    id: keywordGroup._id,
+                    type: keywordGroup.type,
+                    comments: comments.map((c) => c.attrs.id),
+                }, keywords);
+            },
             [json_schema_1.ObjectTypes.Keyword]: (data) => {
-                const model = data;
+                const keyword = data;
+                const comments = this.createCommentsNode(keyword);
+                comments.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema_1.schema.nodes.keyword.create({
-                    id: model._id,
-                    contents: model.name,
-                    comments: this.createCommentsNode(model),
-                }, schema_1.schema.text(model.name));
+                    id: keyword._id,
+                    contents: keyword.name,
+                    comments: comments.map((c) => c.attrs.id),
+                }, schema_1.schema.text(keyword.name));
             },
             [json_schema_1.ObjectTypes.ListElement]: (data) => {
                 const model = data;
@@ -473,9 +510,6 @@ class Decoder {
                     for (const id of model.elementIDs) {
                         const element = this.getModel(id);
                         if (element) {
-                            if (isKeywordsSection(model) && isParagraphElement(element)) {
-                                continue;
-                            }
                             elements.push(element);
                         }
                         else if (this.allowMissingElements) {
@@ -516,17 +550,11 @@ class Decoder {
                 const sectionNodeType = (0, section_category_1.chooseSectionNodeType)(sectionCategory);
                 const commentNodes = this.createCommentsNode(model);
                 commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
-                let content;
-                if (isAffiliationsSection(model) || isContributorsSection(model)) {
-                    content = elementNodes.concat(nestedSections);
-                }
-                else {
-                    content = (sectionLabelNode
-                        ? [sectionLabelNode, sectionTitleNode]
-                        : [sectionTitleNode])
-                        .concat(elementNodes)
-                        .concat(nestedSections);
-                }
+                const content = (sectionLabelNode
+                    ? [sectionLabelNode, sectionTitleNode]
+                    : [sectionTitleNode])
+                    .concat(elementNodes)
+                    .concat(nestedSections);
                 const sectionNode = sectionNodeType.createAndFill({
                     id: model._id,
                     category: sectionCategory,
@@ -645,13 +673,21 @@ class Decoder {
         };
         this.getModel = (id) => this.modelMap.get(id);
         this.createArticleNode = (manuscriptID) => {
-            const titlesNode = this.createTitleNode();
-            const rootSectionNodes = this.createRootSectionNodes();
-            const metaSectionNode = this.createMetaSectionNode();
+            const title = this.createTitleNode();
+            const contributors = this.createContributorsNode();
+            const affiliations = this.createAffiliationsNode();
+            const keywords = this.createKeywordsNode();
+            const { abstracts, body, backmatter } = this.createRootSectionNodes();
+            const meta = this.createMetaSectionNode();
             const contents = [
-                titlesNode,
-                ...rootSectionNodes,
-                metaSectionNode,
+                title,
+                contributors,
+                affiliations,
+                keywords,
+                abstracts,
+                body,
+                backmatter,
+                meta,
             ];
             return schema_1.schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
@@ -693,23 +729,6 @@ class Decoder {
             }
             return parser.parse(template.content.firstElementChild, options);
         };
-        this.getKeywords = (id) => {
-            const keywordsOfKind = [];
-            const keywordsByGroup = [...this.modelMap.values()].filter((m) => m.objectType === json_schema_1.ObjectTypes.Keyword &&
-                m.containedGroup === id);
-            for (const model of keywordsByGroup) {
-                if (isKeyword(model)) {
-                    const keyword = this.parseContents(model.name || '', 'div', this.getComments(model), {
-                        topNode: schema_1.schema.nodes.keyword.create({
-                            id: model._id,
-                            contents: model.name,
-                        }),
-                    });
-                    keywordsOfKind.push(keyword);
-                }
-            }
-            return keywordsOfKind;
-        };
         this.getManuscriptID = () => {
             for (const item of this.modelMap.values()) {
                 if ((0, object_types_1.isManuscript)(item)) {
@@ -794,27 +813,5 @@ class Decoder {
         }
         return listing;
     }
-    getKeywordGroups() {
-        const kwdGroupNodes = [];
-        const kwdGroupsModels = [
-            ...this.modelMap.values(),
-        ].filter((model) => model.objectType === json_schema_1.ObjectTypes.KeywordGroup);
-        if (kwdGroupsModels.length > 0) {
-            for (const kwdGroupModel of kwdGroupsModels) {
-                const keywords = this.getKeywords(kwdGroupModel._id);
-                const commentNodes = this.createCommentsNode(kwdGroupModel);
-                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
-                const contents = [];
-                contents.push(...keywords);
-                const kwdGroupNode = schema_1.schema.nodes.keywords_group.create({
-                    id: kwdGroupModel._id,
-                    type: kwdGroupModel.type,
-                    comments: commentNodes.map((c) => c.attrs.id),
-                }, contents);
-                kwdGroupNodes.push(kwdGroupNode);
-            }
-        }
-        return kwdGroupNodes;
-    }
 }
 exports.Decoder = Decoder;

package/dist/cjs/transformer/encode.js

@@ -428,34 +428,9 @@ const encoders = {
         elementType: 'div',
         paragraphStyle: node.attrs.paragraphStyle || undefined,
     }),
-    keywords_group: (node) => ({
+    keyword_group: (node) => ({
         type: node.attrs.type,
     }),
-    keywords_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        title: inlineContentsOfNodeType(node, node.type.schema.nodes.section_title),
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    affiliations_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
-    contributors_section: (node, parent, path, priority) => ({
-        category: (0, section_category_1.buildSectionCategory)(node),
-        priority: priority.value++,
-        path: path.concat([node.attrs.id]),
-        elementIDs: childElements(node)
-            .map((childNode) => childNode.attrs.id)
-            .filter((id) => id),
-    }),
     missing_figure: (node) => ({
         position: node.attrs.position || undefined,
     }),
@@ -573,9 +548,18 @@ const modelFromNode = (node, parent, path, priority) => {
     if ((0, highlight_markers_1.isHighlightableModel)(model)) {
         (0, highlight_markers_1.extractHighlightMarkers)(model, commentAnnotationsMap);
     }
-    return { model, commentAnnotationsMap };
+    const comments = [...commentAnnotationsMap.values()];
+    return { model, comments };
 };
 exports.modelFromNode = modelFromNode;
+function isCoreSection(child) {
+    return (child.type === schema_1.schema.nodes.abstracts ||
+        child.type === schema_1.schema.nodes.body ||
+        child.type === schema_1.schema.nodes.backmatter ||
+        child.type === schema_1.schema.nodes.affiliations ||
+        child.type === schema_1.schema.nodes.contributors ||
+        child.type === schema_1.schema.nodes.keywords);
+}
 const encode = (node) => {
     const models = new Map();
     const priority = {
@@ -583,6 +567,10 @@ const encode = (node) => {
     };
     const placeholders = ['placeholder', 'placeholder_element'];
     const addModel = (path, parent) => (child) => {
+        if (isCoreSection(child)) {
+            child.forEach(addModel([], child));
+            return;
+        }
         if (!child.attrs.id) {
             return;
         }
@@ -595,10 +583,18 @@ const encode = (node) => {
         if (placeholders.includes(child.type.name)) {
             return;
         }
-        const { model } = (0, exports.modelFromNode)(child, parent, path, priority);
+        const { model, comments } = (0, exports.modelFromNode)(child, parent, path, priority);
         if (models.has(model._id)) {
             throw Error(`Encountered duplicate ids in models map while encoding: ${model._id}`);
         }
+        comments.forEach((comment) => {
+            const proseMirrorComment = models.get(comment._id);
+            if (proseMirrorComment) {
+                ;
+                proseMirrorComment.selector = comment.selector;
+                models.set(comment._id, proseMirrorComment);
+            }
+        });
         models.set(model._id, model);
         child.forEach(addModel(path.concat(child.attrs.id), child));
     };

package/dist/cjs/transformer/node-names.js

@@ -38,6 +38,6 @@ exports.nodeNames = new Map([
     [schema_1.schema.nodes.table_element, 'Table'],
     [schema_1.schema.nodes.blockquote_element, 'Block Quote'],
     [schema_1.schema.nodes.pullquote_element, 'Pull Quote'],
-    [schema_1.schema.nodes.keywords_section, 'Section'],
+    [schema_1.schema.nodes.keywords, 'Section'],
     [schema_1.schema.nodes.toc_section, 'Section'],
 ]);

package/dist/cjs/transformer/node-title.js

@@ -50,7 +50,7 @@ const nodeTitle = (node) => {
         case nodes.section:
         case nodes.bibliography_section:
         case nodes.footnotes_section:
-        case nodes.keywords_section:
+        case nodes.keywords:
         case nodes.toc_section:
         case nodes.graphical_abstract_section:
             return snippetOfNodeType(node, nodes.section_title);

package/dist/cjs/transformer/node-types.js

@@ -19,6 +19,9 @@ exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exp
 const json_schema_1 = require("@manuscripts/json-schema");
 const schema_1 = require("../schema");
 exports.nodeTypesMap = new Map([
+    [schema_1.schema.nodes.abstracts, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.body, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.backmatter, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.comment, json_schema_1.ObjectTypes.CommentAnnotation],
     [schema_1.schema.nodes.bibliography_item, json_schema_1.ObjectTypes.BibliographyItem],
     [schema_1.schema.nodes.bibliography_element, json_schema_1.ObjectTypes.BibliographyElement],
@@ -40,8 +43,8 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
     [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
     [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
-    [schema_1.schema.nodes.keywords_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.keywords_group, json_schema_1.ObjectTypes.KeywordGroup],
+    [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.keyword_group, json_schema_1.ObjectTypes.KeywordGroup],
     [schema_1.schema.nodes.listing, json_schema_1.ObjectTypes.Listing],
     [schema_1.schema.nodes.listing_element, json_schema_1.ObjectTypes.ListingElement],
     [schema_1.schema.nodes.manuscript, json_schema_1.ObjectTypes.Manuscript],
@@ -57,9 +60,9 @@ exports.nodeTypesMap = new Map([
     [schema_1.schema.nodes.affiliation, json_schema_1.ObjectTypes.Affiliation],
     [schema_1.schema.nodes.contributor, json_schema_1.ObjectTypes.Contributor],
     [schema_1.schema.nodes.table_element_footer, json_schema_1.ObjectTypes.TableElementFooter],
+    [schema_1.schema.nodes.contributors, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.affiliations, json_schema_1.ObjectTypes.Section],
     [schema_1.schema.nodes.title, json_schema_1.ObjectTypes.Titles],
-    [schema_1.schema.nodes.contributors_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.affiliations_section, json_schema_1.ObjectTypes.Section],
 ]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;

package/dist/cjs/transformer/section-category.js

@@ -15,14 +15,14 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = exports.getCoreSectionTitles = void 0;
+exports.chooseSectionCategoryFromTitle = exports.chooseSectionCategory = exports.chooseSectionCategoryByType = exports.chooseCoreSectionBySection = exports.chooseSecType = exports.chooseJatsFnType = exports.buildSectionCategory = exports.guessSectionCategory = exports.chooseSectionLableName = exports.chooseSectionNodeType = exports.isAnySectionNode = exports.getCoreSectionTitles = void 0;
 const json_schema_1 = require("@manuscripts/json-schema");
 const core_section_categories_1 = require("../lib/core-section-categories");
 const schema_1 = require("../schema");
 const sectionNodeTypes = [
     schema_1.schema.nodes.bibliography_section,
     schema_1.schema.nodes.footnotes_section,
-    schema_1.schema.nodes.keywords_section,
+    schema_1.schema.nodes.keywords,
     schema_1.schema.nodes.section,
     schema_1.schema.nodes.toc_section,
 ];
@@ -45,11 +45,11 @@ const chooseSectionNodeType = (category) => {
         case 'MPSectionCategory:endnotes':
             return schema_1.schema.nodes.footnotes_section;
         case 'MPSectionCategory:keywords':
-            return schema_1.schema.nodes.keywords_section;
+            return schema_1.schema.nodes.keywords;
         case 'MPSectionCategory:affiliations':
-            return schema_1.schema.nodes.affiliations_section;
+            return schema_1.schema.nodes.affiliations;
         case 'MPSectionCategory:contributors':
-            return schema_1.schema.nodes.contributors_section;
+            return schema_1.schema.nodes.contributors;
         case 'MPSectionCategory:toc':
             return schema_1.schema.nodes.toc_section;
         default:
@@ -90,15 +90,15 @@ const buildSectionCategory = (node) => {
             return 'MPSectionCategory:bibliography';
         case schema_1.schema.nodes.footnotes_section:
             return 'MPSectionCategory:endnotes';
-        case schema_1.schema.nodes.keywords_section:
+        case schema_1.schema.nodes.keywords:
             return 'MPSectionCategory:keywords';
         case schema_1.schema.nodes.toc_section:
             return 'MPSectionCategory:toc';
         case schema_1.schema.nodes.graphical_abstract_section:
             return 'MPSectionCategory:abstract-graphical';
-        case schema_1.schema.nodes.affiliations_section:
+        case schema_1.schema.nodes.affiliations:
             return 'MPSectionCategory:affiliations';
-        case schema_1.schema.nodes.contributors_section:
+        case schema_1.schema.nodes.contributors:
             return 'MPSectionCategory:contributors';
         default:
             return node.attrs.category || undefined;
@@ -128,6 +128,33 @@ const chooseSecType = (sectionCategory) => {
     }
 };
 exports.chooseSecType = chooseSecType;
+const chooseCoreSectionBySection = (section) => {
+    switch (section) {
+        case 'MPSectionCategory:abstract':
+        case 'MPSectionCategory:abstract-teaser':
+        case 'MPSectionCategory:abstract-graphical':
+            return 'MPSectionCategory:abstracts';
+        case 'MPSectionCategory:acknowledgement':
+        case 'MPSectionCategory:availability':
+        case 'MPSectionCategory:conclusions':
+        case 'MPSectionCategory:bibliography':
+        case 'MPSectionCategory:discussion':
+        case 'MPSectionCategory:endnotes':
+        case 'MPSectionCategory:appendices':
+        case 'MPSectionCategory:competing-interests':
+        case 'MPSectionCategory:con':
+        case 'MPSectionCategory:deceased':
+        case 'MPSectionCategory:ethics-statement':
+        case 'MPSectionCategory:financial-disclosure':
+        case 'MPSectionCategory:supplementary-material':
+        case 'MPSectionCategory:supported-by':
+        case 'MPSectionCategory:abbreviations':
+        case 'MPSectionCategory:results':
+            return 'MPSectionCategory:backmatter';
+    }
+    return 'MPSectionCategory:body';
+};
+exports.chooseCoreSectionBySection = chooseCoreSectionBySection;
 const chooseSectionCategoryByType = (secType) => {
     switch (secType) {
         case 'abstract':

package/dist/es/jats/importer/jats-body-dom-parser.js

@@ -501,7 +501,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations_section',
+        node: 'affiliations',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -513,7 +513,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations_section/',
+        context: 'affiliations/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -560,7 +560,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors_section',
+        node: 'contributors',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -572,7 +572,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors_section/',
+        context: 'contributors/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -627,19 +627,19 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords_section',
-        getAttrs: (node) => {
-            const element = node;
-            return {
-                id: element.getAttribute('id'),
-                category: chooseSectionCategory(element),
-            };
-        },
+        node: 'keywords',
     },
     {
-        tag: 'kwd-group-list',
-        context: 'keywords_section/',
-        node: 'keywords_element',
+        tag: 'sec[sec-type="abstracts"]',
+        node: 'abstracts',
+    },
+    {
+        tag: 'sec[sec-type="body"]',
+        node: 'body',
+    },
+    {
+        tag: 'sec[sec-type="backmatter"]',
+        node: 'backmatter',
     },
     {
         tag: 'sec',
@@ -652,10 +652,15 @@ const nodes = [
             };
         },
     },
+    {
+        tag: 'kwd-group-list',
+        context: 'keywords/',
+        node: 'keywords_element',
+    },
     {
         tag: 'kwd-group',
         context: 'keywords_element/',
-        node: 'keywords_group',
+        node: 'keyword_group',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -665,7 +670,7 @@ const nodes = [
     },
     {
         tag: 'kwd',
-        context: 'keywords_group//',
+        context: 'keyword_group//',
         node: 'keyword',
     },
     {
@@ -720,7 +725,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
     },
     {
         tag: 'title',

package/dist/es/jats/importer/jats-body-transformations.js

@@ -377,9 +377,9 @@ export const jatsBodyTransformations = {
             const title = createElement('title');
             title.textContent = 'Keywords';
             section.append(title);
-            const kwdGroupsEl = createElement('kwd-group-list');
-            kwdGroupsEl.append(keywordGroups[0]);
-            section.append(kwdGroupsEl);
+            const keywordsElement = createElement('kwd-group-list');
+            keywordsElement.append(keywordGroups[0]);
+            section.append(keywordsElement);
             body.prepend(section);
         }
     },