@manuscripts/transform 1.5.5 → 1.5.7-LEAN-3030

package/dist/cjs/jats/importer/jats-body-dom-parser.js

@@ -507,7 +507,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="affiliations"]',
-        node: 'affiliations_section',
+        node: 'affiliations',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -519,7 +519,7 @@ const nodes = [
     {
         tag: 'aff',
         node: 'affiliation',
-        context: 'affiliations_section/',
+        context: 'affiliations/',
         getAttrs: (node) => {
             const element = node;
             const aff = {
@@ -566,7 +566,7 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="contributors"]',
-        node: 'contributors_section',
+        node: 'contributors',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -578,7 +578,7 @@ const nodes = [
     {
         tag: 'contrib',
         node: 'contributor',
-        context: 'contributors_section/',
+        context: 'contributors/',
         getAttrs: (node) => {
             const element = node;
             const contrib = {
@@ -633,19 +633,19 @@ const nodes = [
     },
     {
         tag: 'sec[sec-type="keywords"]',
-        node: 'keywords_section',
-        getAttrs: (node) => {
-            const element = node;
-            return {
-                id: element.getAttribute('id'),
-                category: (0, transformer_1.chooseSectionCategory)(element),
-            };
-        },
+        node: 'keywords',
     },
     {
-        tag: 'kwd-group-list',
-        context: 'keywords_section/',
-        node: 'keywords_element',
+        tag: 'sec[sec-type="abstracts"]',
+        node: 'abstracts',
+    },
+    {
+        tag: 'sec[sec-type="body"]',
+        node: 'body',
+    },
+    {
+        tag: 'sec[sec-type="backmatter"]',
+        node: 'backmatter',
     },
     {
         tag: 'sec',
@@ -658,10 +658,15 @@ const nodes = [
             };
         },
     },
+    {
+        tag: 'kwd-group-list',
+        context: 'keywords/',
+        node: 'keywords_element',
+    },
     {
         tag: 'kwd-group',
         context: 'keywords_element/',
-        node: 'keywords_group',
+        node: 'keyword_group',
         getAttrs: (node) => {
             const element = node;
             return {
@@ -671,7 +676,7 @@ const nodes = [
     },
     {
         tag: 'kwd',
-        context: 'keywords_group//',
+        context: 'keyword_group//',
         node: 'keyword',
     },
     {
@@ -726,7 +731,7 @@ const nodes = [
     {
         tag: 'title',
         node: 'section_title',
-        context: 'section/|footnotes_section/|bibliography_section/|keywords_section/',
+        context: 'section/|footnotes_section/|bibliography_section/|keywords/',
     },
     {
         tag: 'title',

package/dist/cjs/jats/importer/jats-body-transformations.js

@@ -380,9 +380,9 @@ exports.jatsBodyTransformations = {
             const title = createElement('title');
             title.textContent = 'Keywords';
             section.append(title);
-            const kwdGroupsEl = createElement('kwd-group-list');
-            kwdGroupsEl.append(keywordGroups[0]);
-            section.append(kwdGroupsEl);
+            const keywordsElement = createElement('kwd-group-list');
+            keywordsElement.append(keywordGroups[0]);
+            section.append(keywordsElement);
             body.prepend(section);
         }
     },

package/dist/cjs/jats/jats-exporter.js

@@ -431,9 +431,11 @@ class JATSExporter {
             }
         };
         this.buildBody = (fragment) => {
-            const content = this.serializeFragment(fragment);
             const body = this.document.createElement('body');
-            body.appendChild(content);
+            fragment.forEach((cFragment) => {
+                const serializedNode = this.serializeNode(cFragment);
+                body.append(...serializedNode.childNodes);
+            });
             this.fixBody(body, fragment);
             return body;
         };
@@ -600,8 +602,8 @@ class JATSExporter {
             const getModel = (id) => id ? this.modelMap.get(id) : undefined;
             const nodes = {
                 title: () => '',
-                affiliations_section: () => '',
-                contributors_section: () => '',
+                affiliations: () => '',
+                contributors: () => '',
                 table_element_footer: () => ['table-wrap-foot', 0],
                 contributor: () => '',
                 affiliation: () => '',
@@ -610,7 +612,10 @@ class JATSExporter {
                 bibliography_element: () => '',
                 bibliography_item: () => '',
                 comment_list: () => '',
-                keywords_group: () => '',
+                keyword_group: () => '',
+                body: () => ['body', 0],
+                abstracts: () => ['abstract', 0],
+                backmatter: () => ['backmatter', 0],
                 bibliography_section: (node) => [
                     'ref-list',
                     { id: normalizeID(node.attrs.id) },
@@ -789,7 +794,7 @@ class JATSExporter {
                 },
                 keyword: () => '',
                 keywords_element: () => '',
-                keywords_section: () => '',
+                keywords: () => '',
                 link: (node) => {
                     const text = node.textContent;
                     if (!text) {

package/dist/cjs/lib/utils.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
+exports.groupBy = exports.getTrimmedTextContent = exports.findParentNodeClosestToPos = exports.isInAbstractsSection = exports.isInBibliographySection = exports.isInGraphicalAbstractSection = exports.findNodePositions = exports.iterateChildren = void 0;
 const bibliography_section_1 = require("../schema/nodes/bibliography_section");
 const graphical_abstract_section_1 = require("../schema/nodes/graphical_abstract_section");
 function* iterateChildren(node, recurse = false) {
@@ -94,3 +94,12 @@ const getTrimmedTextContent = (node, querySelector) => {
     return (_b = (_a = node.querySelector(querySelector)) === null || _a === void 0 ? void 0 : _a.textContent) === null || _b === void 0 ? void 0 : _b.trim();
 };
 exports.getTrimmedTextContent = getTrimmedTextContent;
+const groupBy = (list, getKey) => list.reduce((previous, currentItem) => {
+    const group = getKey(currentItem);
+    if (!previous[group]) {
+        previous[group] = [];
+    }
+    previous[group].push(currentItem);
+    return previous;
+}, {});
+exports.groupBy = groupBy;

package/dist/cjs/schema/index.js

@@ -33,7 +33,7 @@ exports.schema = void 0;
 const prosemirror_model_1 = require("prosemirror-model");
 const marks_1 = require("./marks");
 const affiliation_1 = require("./nodes/affiliation");
-const affiliations_section_1 = require("./nodes/affiliations_section");
+const affiliations_1 = require("./nodes/affiliations");
 const attribution_1 = require("./nodes/attribution");
 const bibliography_element_1 = require("./nodes/bibliography_element");
 const bibliography_item_1 = require("./nodes/bibliography_item");
@@ -45,7 +45,8 @@ const citation_1 = require("./nodes/citation");
 const comment_1 = require("./nodes/comment");
 const comment_list_1 = require("./nodes/comment_list");
 const contributor_1 = require("./nodes/contributor");
-const contributors_section_1 = require("./nodes/contributors_section");
+const contributors_1 = require("./nodes/contributors");
+const core_section_1 = require("./nodes/core_section");
 const cross_reference_1 = require("./nodes/cross_reference");
 const doc_1 = require("./nodes/doc");
 const equation_1 = require("./nodes/equation");
@@ -62,9 +63,9 @@ const highlight_marker_1 = require("./nodes/highlight_marker");
 const inline_equation_1 = require("./nodes/inline_equation");
 const inline_footnote_1 = require("./nodes/inline_footnote");
 const keyword_1 = require("./nodes/keyword");
+const keyword_group_1 = require("./nodes/keyword_group");
+const keywords_1 = require("./nodes/keywords");
 const keywords_element_1 = require("./nodes/keywords_element");
-const keywords_group_1 = require("./nodes/keywords_group");
-const keywords_section_1 = require("./nodes/keywords_section");
 const link_1 = require("./nodes/link");
 const list_1 = require("./nodes/list");
 const listing_1 = require("./nodes/listing");
@@ -117,7 +118,7 @@ __exportStar(require("./nodes/inline_equation"), exports);
 __exportStar(require("./nodes/inline_footnote"), exports);
 __exportStar(require("./nodes/keyword"), exports);
 __exportStar(require("./nodes/keywords_element"), exports);
-__exportStar(require("./nodes/keywords_section"), exports);
+__exportStar(require("./nodes/keywords"), exports);
 __exportStar(require("./nodes/link"), exports);
 __exportStar(require("./nodes/list"), exports);
 __exportStar(require("./nodes/listing"), exports);
@@ -142,8 +143,8 @@ __exportStar(require("./nodes/meta_section"), exports);
 __exportStar(require("./nodes/contributor"), exports);
 __exportStar(require("./nodes/table_element_footer"), exports);
 __exportStar(require("./nodes/title"), exports);
-__exportStar(require("./nodes/affiliations_section"), exports);
-__exportStar(require("./nodes/contributors_section"), exports);
+__exportStar(require("./nodes/affiliations"), exports);
+__exportStar(require("./nodes/contributors"), exports);
 exports.schema = new prosemirror_model_1.Schema({
     marks: {
         bold: marks_1.bold,
@@ -170,6 +171,9 @@ exports.schema = new prosemirror_model_1.Schema({
         caption: caption_1.caption,
         caption_title: caption_title_1.captionTitle,
         citation: citation_1.citation,
+        abstracts: core_section_1.coreSection,
+        body: core_section_1.coreSection,
+        backmatter: core_section_1.coreSection,
         cross_reference: cross_reference_1.crossReference,
         doc: doc_1.doc,
         equation: equation_1.equation,
@@ -187,8 +191,8 @@ exports.schema = new prosemirror_model_1.Schema({
         inline_footnote: inline_footnote_1.inlineFootnote,
         keyword: keyword_1.keyword,
         keywords_element: keywords_element_1.keywordsElement,
-        keywords_section: keywords_section_1.keywordsSection,
-        keywords_group: keywords_group_1.keywordsGroup,
+        keywords: keywords_1.keywords,
+        keyword_group: keyword_group_1.keywordGroup,
         link: link_1.link,
         list_item: list_1.listItem,
         listing: listing_1.listing,
@@ -219,7 +223,7 @@ exports.schema = new prosemirror_model_1.Schema({
         contributor: contributor_1.contributor,
         table_element_footer: table_element_footer_1.tableElementFooter,
         title: title_1.title,
-        affiliations_section: affiliations_section_1.affiliationsSection,
-        contributors_section: contributors_section_1.contributorsSection,
+        affiliations: affiliations_1.affiliations,
+        contributors: contributors_1.contributors,
     },
 });

package/dist/cjs/schema/nodes/{affiliations_section.js → affiliations.js}

@@ -1,13 +1,14 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isAffiliationsSectionNode = exports.affiliationsSection = void 0;
-exports.affiliationsSection = {
+exports.isAffiliationsNode = exports.affiliations = void 0;
+const index_1 = require("../index");
+exports.affiliations = {
     content: 'section_title? affiliation*',
     attrs: {
         id: { default: 'META_SECTION_AFFILLIATIONS' },
         dataTracked: { default: null },
     },
-    group: 'block sections',
+    group: 'block',
     selectable: false,
     parseDOM: [
         {
@@ -21,16 +22,16 @@ exports.affiliationsSection = {
         },
     ],
     toDOM: (node) => {
-        const affiliationsSectionNode = node;
+        const affiliations = node;
         return [
             'section',
             {
                 class: 'affiliations',
-                id: affiliationsSectionNode.attrs.id,
+                id: affiliations.attrs.id,
             },
-            0
+            0,
         ];
     },
 };
-const isAffiliationsSectionNode = (node) => node.type === node.type.schema.nodes.affiliations_section;
-exports.isAffiliationsSectionNode = isAffiliationsSectionNode;
+const isAffiliationsNode = (node) => node.type === index_1.schema.nodes.affiliations;
+exports.isAffiliationsNode = isAffiliationsNode;

package/dist/cjs/schema/nodes/{contributors_section.js → contributors.js}

@@ -1,14 +1,15 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isContributorsSectionNode = exports.contributorsSection = void 0;
-exports.contributorsSection = {
+exports.isContributorsNode = exports.contributors = void 0;
+const index_1 = require("../index");
+exports.contributors = {
     content: 'section_title? contributor*',
     attrs: {
         id: { default: 'META_SECTION_CONTRIBUTORS' },
         dataTracked: { default: null },
         contents: { default: '' },
     },
-    group: 'block sections',
+    group: 'block',
     selectable: false,
     parseDOM: [
         {
@@ -21,16 +22,16 @@ exports.contributorsSection = {
         },
     ],
     toDOM: (node) => {
-        const contributorsSectionNode = node;
+        const contributors = node;
         return [
             'section',
             {
                 class: 'contributors',
-                id: contributorsSectionNode.attrs.id,
+                id: contributors.attrs.id,
             },
             0,
         ];
     },
 };
-const isContributorsSectionNode = (node) => node.type === node.type.schema.nodes.contributors_section;
-exports.isContributorsSectionNode = isContributorsSectionNode;
+const isContributorsNode = (node) => node.type === index_1.schema.nodes.contributors;
+exports.isContributorsNode = isContributorsNode;

package/dist/cjs/schema/nodes/core_section.js

@@ -0,0 +1,27 @@
+"use strict";
+/*!
+ * © 2019 Atypon Systems LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.coreSection = void 0;
+exports.coreSection = {
+    content: 'sections*',
+    atom: true,
+    attrs: {
+        id: { default: '' },
+    },
+    group: 'block',
+    toDOM: () => ['section', 0],
+};

package/dist/cjs/schema/nodes/graphical_abstract_section.js

@@ -21,6 +21,7 @@ exports.graphicalAbstractSection = {
     attrs: {
         id: { default: '' },
         category: { default: '' },
+        dataTracked: { default: null },
     },
     group: 'block sections',
     selectable: false,

package/dist/cjs/schema/nodes/keyword.js

@@ -21,7 +21,6 @@ exports.keyword = {
     content: 'inline*',
     attrs: {
         id: { default: '' },
-        contents: { default: '' },
         dataTracked: { default: null },
         comments: { default: null },
     },

package/dist/cjs/schema/nodes/{keywords_group.js → keyword_group.js}

@@ -15,8 +15,8 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isKeywordsGroupNode = exports.keywordsGroup = void 0;
-exports.keywordsGroup = {
+exports.isKeywordGroupNode = exports.keywordGroup = void 0;
+exports.keywordGroup = {
     content: 'keyword*',
     attrs: {
         id: { default: '' },
@@ -31,11 +31,11 @@ exports.keywordsGroup = {
         },
     ],
     toDOM: (node) => {
-        const keywordsGroupNode = node;
+        const keywordGroupNode = node;
         return [
             'div',
             {
-                id: keywordsGroupNode.attrs.id,
+                id: keywordGroupNode.attrs.id,
                 class: 'keywords',
                 spellcheck: 'false',
                 contenteditable: false,
@@ -44,5 +44,5 @@ exports.keywordsGroup = {
         ];
     },
 };
-const isKeywordsGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
-exports.isKeywordsGroupNode = isKeywordsGroupNode;
+const isKeywordGroupNode = (node) => node.type === node.type.schema.nodes.keywords_group;
+exports.isKeywordGroupNode = isKeywordGroupNode;

package/dist/cjs/schema/nodes/{keywords_section.js → keywords.js}

@@ -15,14 +15,14 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isKeywordsSectionNode = exports.keywordsSection = void 0;
-exports.keywordsSection = {
+exports.isKeywordsNode = exports.keywords = void 0;
+exports.keywords = {
     content: 'section_title (keywords_element | placeholder_element)',
     attrs: {
         id: { default: '' },
         dataTracked: { default: null },
     },
-    group: 'block sections',
+    group: 'block',
     selectable: false,
     parseDOM: [
         {
@@ -30,11 +30,11 @@ exports.keywordsSection = {
         },
     ],
     toDOM: (node) => {
-        const keywordsSectionNode = node;
+        const keywords = node;
         return [
             'div',
             {
-                id: keywordsSectionNode.attrs.id,
+                id: keywords.attrs.id,
                 class: 'keywords',
                 spellcheck: 'false',
                 contenteditable: false,
@@ -43,5 +43,5 @@ exports.keywordsSection = {
         ];
     },
 };
-const isKeywordsSectionNode = (node) => node.type === node.type.schema.nodes.keywords_section;
-exports.isKeywordsSectionNode = isKeywordsSectionNode;
+const isKeywordsNode = (node) => node.type === node.type.schema.nodes.keywords;
+exports.isKeywordsNode = isKeywordsNode;

package/dist/cjs/schema/nodes/keywords_element.js

@@ -18,7 +18,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.keywordsElement = void 0;
 exports.keywordsElement = {
     atom: true,
-    content: 'keywords_group*',
+    content: 'keyword_group*',
     attrs: {
         id: { default: '' },
         contents: { default: '' },

package/dist/cjs/schema/nodes/manuscript.js

@@ -17,7 +17,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.manuscript = void 0;
 exports.manuscript = {
-    content: 'title* (section | sections)+ meta_section',
+    content: 'title? contributors? affiliations? keywords? abstracts body backmatter meta_section',
     attrs: {
         id: { default: '' },
     },