@manuscripts/transform 1.0.0 → 1.0.1-LEAN-2105

package/dist/cjs/transformer/decode.js

@@ -30,7 +30,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Decoder = exports.isManuscriptNode = exports.sortSectionsByPriority = exports.getModelsByType = exports.getModelData = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 const debug_1 = __importDefault(require("debug"));
 const prosemirror_model_1 = require("prosemirror-model");
 const errors_1 = require("../errors");
@@ -59,11 +59,11 @@ const getModelsByType = (modelMap, objectType) => {
 exports.getModelsByType = getModelsByType;
 const sortSectionsByPriority = (a, b) => a.priority === b.priority ? 0 : Number(a.priority) - Number(b.priority);
 exports.sortSectionsByPriority = sortSectionsByPriority;
-const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, manuscripts_json_schema_1.ObjectTypes.Section).sort(exports.sortSectionsByPriority);
+const getSections = (modelMap) => (0, exports.getModelsByType)(modelMap, json_schema_1.ObjectTypes.Section).sort(exports.sortSectionsByPriority);
 const isManuscriptNode = (model) => model !== null;
 exports.isManuscriptNode = isManuscriptNode;
-const isParagraphElement = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.ParagraphElement);
-const isFootnote = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Footnote);
+const isParagraphElement = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphElement);
+const isFootnote = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Footnote);
 const hasParentSection = (id) => (section) => section.path &&
     section.path.length > 1 &&
     section.path[section.path.length - 2] === id;
@@ -98,8 +98,9 @@ class Decoder {
         }
     }
     constructor(modelMap, allowMissingElements = false) {
+        this.comments = new Map();
         this.creators = {
-            [manuscripts_json_schema_1.ObjectTypes.BibliographyElement]: (data) => {
+            [json_schema_1.ObjectTypes.BibliographyElement]: (data) => {
                 var _a;
                 const model = data;
                 const referenceIDs = (_a = model.containedObjectIDs) === null || _a === void 0 ? void 0 : _a.filter((i) => i.startsWith('MPBibliographyItem'));
@@ -119,7 +120,7 @@ class Decoder {
                     paragraphStyle: model.paragraphStyle,
                 }, references);
             },
-            [manuscripts_json_schema_1.ObjectTypes.BibliographyItem]: (data) => {
+            [json_schema_1.ObjectTypes.BibliographyItem]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.bibliography_item.create({
                     id: model._id,
@@ -142,17 +143,19 @@ class Decoder {
                     id: model._id,
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.Figure]: (data) => {
+            [json_schema_1.ObjectTypes.Figure]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema_1.schema.nodes.figure.create({
                     id: model._id,
                     contentType: model.contentType,
                     src: model.src,
                     position: model.position,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.FigureElement]: (data) => {
+            [json_schema_1.ObjectTypes.FigureElement]: (data) => {
                 const model = data;
                 const paragraphIDs = model.containedObjectIDs.filter((i) => i.startsWith('MPParagraphElement'));
                 const figureIDs = model.containedObjectIDs.filter((i) => i.startsWith('MPFigure') || i.startsWith('MPMissingFigure'));
@@ -178,6 +181,8 @@ class Decoder {
                     figures.push(schema_1.schema.nodes.figure.createAndFill());
                 }
                 const figcaption = this.getFigcaption(model);
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 const content = [...paragraphs, ...figures, figcaption];
                 const listing = this.extractListing(model);
                 if (listing) {
@@ -198,10 +203,10 @@ class Decoder {
                     suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
                     attribution: model.attribution,
                     alternatives: model.alternatives,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 }, content);
             },
-            [manuscripts_json_schema_1.ObjectTypes.Equation]: (data) => {
+            [json_schema_1.ObjectTypes.Equation]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.equation.createChecked({
                     id: model._id,
@@ -210,7 +215,7 @@ class Decoder {
                     TeXRepresentation: model.TeXRepresentation,
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.EquationElement]: (data) => {
+            [json_schema_1.ObjectTypes.EquationElement]: (data) => {
                 const model = data;
                 const equationModel = this.getModel(model.containedObjectID);
                 let equation;
@@ -233,17 +238,19 @@ class Decoder {
                     suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
                 }, [equation, figcaption]);
             },
-            [manuscripts_json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
+            [json_schema_1.ObjectTypes.FootnotesElement]: (data) => {
                 const model = data;
                 const collateByKind = model.collateByKind || 'footnote';
                 const footnotesOfKind = [];
                 for (const model of this.modelMap.values()) {
                     if (isFootnote(model) && model.kind === collateByKind) {
+                        const commentNodes = this.createCommentsNode(model);
+                        commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                         const footnote = this.parseContents(model.contents || '<div></div>', undefined, this.getComments(model), {
                             topNode: schema_1.schema.nodes.footnote.create({
                                 id: model._id,
                                 kind: model.kind,
-                                comments: this.createCommentsNode(model),
+                                comments: commentNodes.map((c) => c.attrs.id),
                             }),
                         });
                         footnotesOfKind.push(footnote);
@@ -255,15 +262,17 @@ class Decoder {
                     paragraphStyle: model.paragraphStyle,
                 }, footnotesOfKind);
             },
-            [manuscripts_json_schema_1.ObjectTypes.Footnote]: (data) => {
+            [json_schema_1.ObjectTypes.Footnote]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema_1.schema.nodes.footnote.create({
                     id: model._id,
                     kind: model.kind,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.KeywordsElement]: (data) => {
+            [json_schema_1.ObjectTypes.KeywordsElement]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.keywords_element.create({
                     id: model._id,
@@ -273,15 +282,17 @@ class Decoder {
                     paragraphStyle: model.paragraphStyle,
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.ListElement]: (data) => {
+            [json_schema_1.ObjectTypes.ListElement]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 switch (model.elementType) {
                     case 'ol':
                         return this.parseContents(model.contents || '<ol></ol>', undefined, this.getComments(model), {
                             topNode: schema_1.schema.nodes.ordered_list.create({
                                 id: model._id,
                                 paragraphStyle: model.paragraphStyle,
-                                comments: this.createCommentsNode(model),
+                                comments: commentNodes.map((c) => c.attrs.id),
                             }),
                         });
                     case 'ul':
@@ -295,17 +306,19 @@ class Decoder {
                         throw new Error('Unknown list element type');
                 }
             },
-            [manuscripts_json_schema_1.ObjectTypes.Listing]: (data) => {
+            [json_schema_1.ObjectTypes.Listing]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema_1.schema.nodes.listing.createChecked({
                     id: model._id,
                     contents: model.contents,
                     language: model.language,
                     languageKey: model.languageKey,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.ListingElement]: (data) => {
+            [json_schema_1.ObjectTypes.ListingElement]: (data) => {
                 const model = data;
                 const listingModel = this.getModel(model.containedObjectID);
                 let listing;
@@ -322,32 +335,36 @@ class Decoder {
                     throw new errors_1.MissingElement(model.containedObjectID);
                 }
                 const figcaption = this.getFigcaption(model);
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return schema_1.schema.nodes.listing_element.createChecked({
                     id: model._id,
                     suppressCaption: model.suppressCaption,
                     suppressTitle: Boolean(model.suppressTitle === undefined ? true : model.suppressTitle),
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 }, [listing, figcaption]);
             },
-            [manuscripts_json_schema_1.ObjectTypes.MissingFigure]: (data) => {
+            [json_schema_1.ObjectTypes.MissingFigure]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.missing_figure.create({
                     id: model._id,
                     position: model.position,
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.ParagraphElement]: (data) => {
+            [json_schema_1.ObjectTypes.ParagraphElement]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return this.parseContents(model.contents || '<p></p>', undefined, this.getComments(model), {
                     topNode: schema_1.schema.nodes.paragraph.create({
                         id: model._id,
                         paragraphStyle: model.paragraphStyle,
                         placeholder: model.placeholderInnerHTML,
-                        comments: this.createCommentsNode(model),
+                        comments: commentNodes.map((c) => c.attrs.id),
                     }),
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.QuoteElement]: (data) => {
+            [json_schema_1.ObjectTypes.QuoteElement]: (data) => {
                 const model = data;
                 switch (model.quoteType) {
                     case 'block':
@@ -370,7 +387,7 @@ class Decoder {
                         throw new Error('Unknown block type');
                 }
             },
-            [manuscripts_json_schema_1.ObjectTypes.Section]: (data) => {
+            [json_schema_1.ObjectTypes.Section]: (data) => {
                 const model = data;
                 const isKeywordsSection = model.category === 'MPSectionCategory:keywords';
                 const elements = [];
@@ -415,9 +432,11 @@ class Decoder {
                 }
                 const nestedSections = getSections(this.modelMap)
                     .filter(hasParentSection(model._id))
-                    .map(this.creators[manuscripts_json_schema_1.ObjectTypes.Section]);
+                    .map(this.creators[json_schema_1.ObjectTypes.Section]);
                 const sectionCategory = model.category || (0, section_category_1.guessSectionCategory)(elements);
                 const sectionNodeType = (0, section_category_1.chooseSectionNodeType)(sectionCategory);
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 const content = (sectionLabelNode
                     ? [sectionLabelNode, sectionTitleNode]
                     : [sectionTitleNode])
@@ -429,7 +448,7 @@ class Decoder {
                     titleSuppressed: model.titleSuppressed,
                     pageBreakStyle: model.pageBreakStyle,
                     generatedLabel: model.generatedLabel,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 }, content);
                 if (!sectionNode) {
                     console.error(model);
@@ -437,16 +456,18 @@ class Decoder {
                 }
                 return sectionNode;
             },
-            [manuscripts_json_schema_1.ObjectTypes.Table]: (data) => {
+            [json_schema_1.ObjectTypes.Table]: (data) => {
                 const model = data;
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 return this.parseContents(model.contents, undefined, this.getComments(model), {
                     topNode: schema_1.schema.nodes.table.create({
                         id: model._id,
-                        comments: this.createCommentsNode(model),
+                        comments: commentNodes.map((c) => c.attrs.id),
                     }),
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.TableElement]: (data) => {
+            [json_schema_1.ObjectTypes.TableElement]: (data) => {
                 const model = data;
                 const tableModel = this.getModel(model.containedObjectID);
                 let table;
@@ -463,6 +484,8 @@ class Decoder {
                     throw new errors_1.MissingElement(model.containedObjectID);
                 }
                 const figcaption = this.getFigcaption(model);
+                const commentNodes = this.createCommentsNode(model);
+                commentNodes.forEach((c) => this.comments.set(c.attrs.id, c));
                 const content = [table, figcaption];
                 if (model.listingID) {
                     const listingModel = this.getModel(model.listingID);
@@ -494,10 +517,10 @@ class Decoder {
                     suppressHeader: model.suppressHeader,
                     tableStyle: model.tableStyle,
                     paragraphStyle: model.paragraphStyle,
-                    comments: this.createCommentsNode(model),
+                    comments: commentNodes.map((c) => c.attrs.id),
                 }, content);
             },
-            [manuscripts_json_schema_1.ObjectTypes.TOCElement]: (data) => {
+            [json_schema_1.ObjectTypes.TOCElement]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.toc_element.create({
                     id: model._id,
@@ -507,7 +530,7 @@ class Decoder {
                     paragraphStyle: model.paragraphStyle,
                 });
             },
-            [manuscripts_json_schema_1.ObjectTypes.CommentAnnotation]: (data) => {
+            [json_schema_1.ObjectTypes.CommentAnnotation]: (data) => {
                 const model = data;
                 return schema_1.schema.nodes.comment.create({
                     id: model._id,
@@ -536,9 +559,16 @@ class Decoder {
                     id: (0, id_1.generateNodeID)(schema_1.schema.nodes.section),
                 }));
             }
+            const contents = rootSectionNodes;
+            if (this.comments.size) {
+                const comments = schema_1.schema.nodes.comment_list.createAndFill({
+                    id: (0, id_1.generateNodeID)(schema_1.schema.nodes.comment_list),
+                }, [...this.comments.values()]);
+                contents.push(comments);
+            }
             return schema_1.schema.nodes.manuscript.create({
                 id: manuscriptID || this.getManuscriptID(),
-            }, rootSectionNodes);
+            }, contents);
         };
         this.addGeneratedLabels = (sections) => {
             const nextLableCount = { Appendix: 1 };

package/dist/cjs/transformer/document-object-types.js

@@ -16,16 +16,16 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.documentObjectTypes = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 exports.documentObjectTypes = [
-    manuscripts_json_schema_1.ObjectTypes.BibliographyElement,
-    manuscripts_json_schema_1.ObjectTypes.EquationElement,
-    manuscripts_json_schema_1.ObjectTypes.FigureElement,
-    manuscripts_json_schema_1.ObjectTypes.ListElement,
-    manuscripts_json_schema_1.ObjectTypes.ListingElement,
-    manuscripts_json_schema_1.ObjectTypes.Manuscript,
-    manuscripts_json_schema_1.ObjectTypes.ParagraphElement,
-    manuscripts_json_schema_1.ObjectTypes.Section,
-    manuscripts_json_schema_1.ObjectTypes.TableElement,
-    manuscripts_json_schema_1.ObjectTypes.TOCElement,
+    json_schema_1.ObjectTypes.BibliographyElement,
+    json_schema_1.ObjectTypes.EquationElement,
+    json_schema_1.ObjectTypes.FigureElement,
+    json_schema_1.ObjectTypes.ListElement,
+    json_schema_1.ObjectTypes.ListingElement,
+    json_schema_1.ObjectTypes.Manuscript,
+    json_schema_1.ObjectTypes.ParagraphElement,
+    json_schema_1.ObjectTypes.Section,
+    json_schema_1.ObjectTypes.TableElement,
+    json_schema_1.ObjectTypes.TOCElement,
 ];

package/dist/cjs/transformer/encode.js

@@ -501,16 +501,6 @@ const modelFromNode = (node, parent, path, priority) => {
     const model = data;
     if ((0, highlight_markers_1.isHighlightableModel)(model)) {
         (0, highlight_markers_1.extractHighlightMarkers)(model, commentAnnotationsMap);
-        if (node.attrs.comments) {
-            const commentNodes = node.attrs.comments;
-            commentNodes
-                .filter((commentNode) => !commentNode.attrs.selector)
-                .forEach((c) => {
-                const commentAnnotation = (0, builders_1.buildComment)(model._id, c.attrs.contents, c.attrs.selector);
-                commentAnnotation._id = c.attrs.id;
-                commentAnnotationsMap.set(commentAnnotation._id, commentAnnotation);
-            });
-        }
     }
     return { model, commentAnnotationsMap };
 };
@@ -528,6 +518,9 @@ const encode = (node) => {
         if ((0, schema_1.isHighlightMarkerNode)(child)) {
             return;
         }
+        if (child.type === schema_1.schema.nodes.comment_list) {
+            return;
+        }
         if (placeholders.includes(child.type.name)) {
             return;
         }
@@ -539,6 +532,14 @@ const encode = (node) => {
         commentAnnotationsMap.forEach((val, key) => models.set(key, val));
         child.forEach(addModel(path.concat(child.attrs.id), child));
     };
+    node.forEach((cNode) => {
+        if (cNode.type === schema_1.schema.nodes.comment_list) {
+            cNode.forEach((child) => {
+                const { model } = (0, exports.modelFromNode)(child, cNode, [], priority);
+                models.set(model._id, model);
+            });
+        }
+    });
     node.forEach(addModel([], node));
     return models;
 };

package/dist/cjs/transformer/html.js

@@ -19,7 +19,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.HTMLTransformer = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 const prosemirror_model_1 = require("prosemirror-model");
 const w3c_xmlserializer_1 = __importDefault(require("w3c-xmlserializer"));
 const jats_exporter_1 = require("../jats/jats-exporter");
@@ -334,7 +334,7 @@ class HTMLTransformer {
         };
     }
     buildContributors(articleMeta) {
-        const contributors = Array.from(this.modelMap.values()).filter((0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Contributor));
+        const contributors = Array.from(this.modelMap.values()).filter((0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Contributor));
         const affiliationIDs = [];
         if (contributors && contributors.length) {
             const contribGroup = this.document.createElement('div');

package/dist/cjs/transformer/index.js

@@ -49,6 +49,5 @@ __exportStar(require("./project-bundle"), exports);
 __exportStar(require("./section-category"), exports);
 __exportStar(require("./serializer"), exports);
 __exportStar(require("./shared-data"), exports);
-__exportStar(require("./tei-grobid-importer"), exports);
 __exportStar(require("./timestamp"), exports);
 __exportStar(require("./update-identifiers"), exports);

package/dist/cjs/transformer/labels.js

@@ -49,8 +49,7 @@ const buildTargets = (fragment, manuscript) => {
         };
     }
     const buildLabel = (type) => {
-        const viewLabel = type;
-        const counter = counters[viewLabel.name];
+        const counter = counters[type.name];
         counter.index++;
         return `${counter.label} ${counter.index}`;
     };

package/dist/cjs/transformer/manuscript-dependencies.js

@@ -12,11 +12,11 @@ var __rest = (this && this.__rest) || function (s, e) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.updatedPageLayout = exports.getByPrototype = exports.fromPrototype = exports.loadBundledDependencies = exports.loadContributorRoles = exports.loadKeywords = exports.loadStyles = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 const id_1 = require("./id");
 const object_types_1 = require("./object-types");
 const shared_data_1 = require("./shared-data");
-const isStatusLabel = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.StatusLabel);
+const isStatusLabel = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.StatusLabel);
 const isBundledModel = (model) => model.bundled === true;
 const loadBundledData = async (file) => {
     const models = await (0, shared_data_1.loadSharedData)(file);
@@ -49,7 +49,7 @@ const getByPrototype = (modelMap, prototype) => {
     }
 };
 exports.getByPrototype = getByPrototype;
-const isParagraphStyle = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.ParagraphStyle);
+const isParagraphStyle = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.ParagraphStyle);
 const chooseNewDefaultParagraphStyle = (styles) => {
     for (const style of styles.values()) {
         if (isParagraphStyle(style)) {

package/dist/cjs/transformer/node-types.js

@@ -16,41 +16,42 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exports.isExecutableNodeType = exports.nodeTypesMap = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 const schema_1 = require("../schema");
 exports.nodeTypesMap = new Map([
-    [schema_1.schema.nodes.comment, manuscripts_json_schema_1.ObjectTypes.CommentAnnotation],
-    [schema_1.schema.nodes.bibliography_item, manuscripts_json_schema_1.ObjectTypes.BibliographyItem],
-    [schema_1.schema.nodes.bibliography_element, manuscripts_json_schema_1.ObjectTypes.BibliographyElement],
-    [schema_1.schema.nodes.bibliography_section, manuscripts_json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.blockquote_element, manuscripts_json_schema_1.ObjectTypes.QuoteElement],
-    [schema_1.schema.nodes.bullet_list, manuscripts_json_schema_1.ObjectTypes.ListElement],
-    [schema_1.schema.nodes.citation, manuscripts_json_schema_1.ObjectTypes.Citation],
-    [schema_1.schema.nodes.cross_reference, manuscripts_json_schema_1.ObjectTypes.AuxiliaryObjectReference],
-    [schema_1.schema.nodes.equation, manuscripts_json_schema_1.ObjectTypes.Equation],
-    [schema_1.schema.nodes.equation_element, manuscripts_json_schema_1.ObjectTypes.EquationElement],
-    [schema_1.schema.nodes.figure, manuscripts_json_schema_1.ObjectTypes.Figure],
-    [schema_1.schema.nodes.missing_figure, manuscripts_json_schema_1.ObjectTypes.MissingFigure],
-    [schema_1.schema.nodes.figure_element, manuscripts_json_schema_1.ObjectTypes.FigureElement],
-    [schema_1.schema.nodes.footnote, manuscripts_json_schema_1.ObjectTypes.Footnote],
-    [schema_1.schema.nodes.footnotes_element, manuscripts_json_schema_1.ObjectTypes.FootnotesElement],
-    [schema_1.schema.nodes.footnotes_section, manuscripts_json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.graphical_abstract_section, manuscripts_json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.highlight_marker, manuscripts_json_schema_1.ObjectTypes.HighlightMarker],
-    [schema_1.schema.nodes.inline_equation, manuscripts_json_schema_1.ObjectTypes.InlineMathFragment],
-    [schema_1.schema.nodes.keywords_element, manuscripts_json_schema_1.ObjectTypes.KeywordsElement],
-    [schema_1.schema.nodes.keywords_section, manuscripts_json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.listing, manuscripts_json_schema_1.ObjectTypes.Listing],
-    [schema_1.schema.nodes.listing_element, manuscripts_json_schema_1.ObjectTypes.ListingElement],
-    [schema_1.schema.nodes.manuscript, manuscripts_json_schema_1.ObjectTypes.Manuscript],
-    [schema_1.schema.nodes.ordered_list, manuscripts_json_schema_1.ObjectTypes.ListElement],
-    [schema_1.schema.nodes.paragraph, manuscripts_json_schema_1.ObjectTypes.ParagraphElement],
-    [schema_1.schema.nodes.pullquote_element, manuscripts_json_schema_1.ObjectTypes.QuoteElement],
-    [schema_1.schema.nodes.section, manuscripts_json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.table, manuscripts_json_schema_1.ObjectTypes.Table],
-    [schema_1.schema.nodes.table_element, manuscripts_json_schema_1.ObjectTypes.TableElement],
-    [schema_1.schema.nodes.toc_element, manuscripts_json_schema_1.ObjectTypes.TOCElement],
-    [schema_1.schema.nodes.toc_section, manuscripts_json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.comment, json_schema_1.ObjectTypes.CommentAnnotation],
+    [schema_1.schema.nodes.bibliography_item, json_schema_1.ObjectTypes.BibliographyItem],
+    [schema_1.schema.nodes.bibliography_element, json_schema_1.ObjectTypes.BibliographyElement],
+    [schema_1.schema.nodes.bibliography_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.blockquote_element, json_schema_1.ObjectTypes.QuoteElement],
+    [schema_1.schema.nodes.bullet_list, json_schema_1.ObjectTypes.ListElement],
+    [schema_1.schema.nodes.citation, json_schema_1.ObjectTypes.Citation],
+    [schema_1.schema.nodes.cross_reference, json_schema_1.ObjectTypes.AuxiliaryObjectReference],
+    [schema_1.schema.nodes.equation, json_schema_1.ObjectTypes.Equation],
+    [schema_1.schema.nodes.equation_element, json_schema_1.ObjectTypes.EquationElement],
+    [schema_1.schema.nodes.figure, json_schema_1.ObjectTypes.Figure],
+    [schema_1.schema.nodes.missing_figure, json_schema_1.ObjectTypes.MissingFigure],
+    [schema_1.schema.nodes.figure_element, json_schema_1.ObjectTypes.FigureElement],
+    [schema_1.schema.nodes.footnote, json_schema_1.ObjectTypes.Footnote],
+    [schema_1.schema.nodes.footnotes_element, json_schema_1.ObjectTypes.FootnotesElement],
+    [schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
+    [schema_1.schema.nodes.inline_equation, json_schema_1.ObjectTypes.InlineMathFragment],
+    [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
+    [schema_1.schema.nodes.keywords_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.listing, json_schema_1.ObjectTypes.Listing],
+    [schema_1.schema.nodes.listing_element, json_schema_1.ObjectTypes.ListingElement],
+    [schema_1.schema.nodes.manuscript, json_schema_1.ObjectTypes.Manuscript],
+    [schema_1.schema.nodes.ordered_list, json_schema_1.ObjectTypes.ListElement],
+    [schema_1.schema.nodes.paragraph, json_schema_1.ObjectTypes.ParagraphElement],
+    [schema_1.schema.nodes.pullquote_element, json_schema_1.ObjectTypes.QuoteElement],
+    [schema_1.schema.nodes.section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.table, json_schema_1.ObjectTypes.Table],
+    [schema_1.schema.nodes.table_element, json_schema_1.ObjectTypes.TableElement],
+    [schema_1.schema.nodes.toc_element, json_schema_1.ObjectTypes.TOCElement],
+    [schema_1.schema.nodes.toc_section, json_schema_1.ObjectTypes.Section],
+    [schema_1.schema.nodes.comment_list, json_schema_1.ObjectTypes.MetaSection],
 ]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;

package/dist/cjs/transformer/object-types.js

@@ -16,42 +16,42 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isCommentAnnotation = exports.isUserProfile = exports.isTable = exports.isManuscript = exports.isFigure = exports.hasObjectType = exports.isManuscriptModel = exports.manuscriptObjects = exports.elementObjects = exports.ExtraObjectTypes = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 var ExtraObjectTypes;
 (function (ExtraObjectTypes) {
     ExtraObjectTypes["PlaceholderElement"] = "MPPlaceholderElement";
 })(ExtraObjectTypes = exports.ExtraObjectTypes || (exports.ExtraObjectTypes = {}));
 exports.elementObjects = [
-    manuscripts_json_schema_1.ObjectTypes.BibliographyElement,
-    manuscripts_json_schema_1.ObjectTypes.EquationElement,
-    manuscripts_json_schema_1.ObjectTypes.FigureElement,
-    manuscripts_json_schema_1.ObjectTypes.FootnotesElement,
-    manuscripts_json_schema_1.ObjectTypes.ListElement,
-    manuscripts_json_schema_1.ObjectTypes.ListingElement,
-    manuscripts_json_schema_1.ObjectTypes.ParagraphElement,
-    manuscripts_json_schema_1.ObjectTypes.TableElement,
-    manuscripts_json_schema_1.ObjectTypes.TOCElement,
+    json_schema_1.ObjectTypes.BibliographyElement,
+    json_schema_1.ObjectTypes.EquationElement,
+    json_schema_1.ObjectTypes.FigureElement,
+    json_schema_1.ObjectTypes.FootnotesElement,
+    json_schema_1.ObjectTypes.ListElement,
+    json_schema_1.ObjectTypes.ListingElement,
+    json_schema_1.ObjectTypes.ParagraphElement,
+    json_schema_1.ObjectTypes.TableElement,
+    json_schema_1.ObjectTypes.TOCElement,
 ];
 exports.manuscriptObjects = [
-    manuscripts_json_schema_1.ObjectTypes.Affiliation,
-    manuscripts_json_schema_1.ObjectTypes.Citation,
-    manuscripts_json_schema_1.ObjectTypes.CommentAnnotation,
-    manuscripts_json_schema_1.ObjectTypes.Contributor,
-    manuscripts_json_schema_1.ObjectTypes.Footnote,
-    manuscripts_json_schema_1.ObjectTypes.InlineMathFragment,
-    manuscripts_json_schema_1.ObjectTypes.Section,
+    json_schema_1.ObjectTypes.Affiliation,
+    json_schema_1.ObjectTypes.Citation,
+    json_schema_1.ObjectTypes.CommentAnnotation,
+    json_schema_1.ObjectTypes.Contributor,
+    json_schema_1.ObjectTypes.Footnote,
+    json_schema_1.ObjectTypes.InlineMathFragment,
+    json_schema_1.ObjectTypes.Section,
 ].concat(exports.elementObjects);
 const isManuscriptModel = (model) => {
     if (!model.objectType) {
         throw new Error('Model must have objectType');
     }
-    return manuscripts_json_schema_1.manuscriptIDTypes.has(model.objectType);
+    return json_schema_1.manuscriptIDTypes.has(model.objectType);
 };
 exports.isManuscriptModel = isManuscriptModel;
 const hasObjectType = (objectType) => (model) => model.objectType === objectType;
 exports.hasObjectType = hasObjectType;
-exports.isFigure = (0, exports.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Figure);
-exports.isManuscript = (0, exports.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Manuscript);
-exports.isTable = (0, exports.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Table);
-exports.isUserProfile = (0, exports.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.UserProfile);
-exports.isCommentAnnotation = (0, exports.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.CommentAnnotation);
+exports.isFigure = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Figure);
+exports.isManuscript = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Manuscript);
+exports.isTable = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.Table);
+exports.isUserProfile = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.UserProfile);
+exports.isCommentAnnotation = (0, exports.hasObjectType)(json_schema_1.ObjectTypes.CommentAnnotation);

package/dist/cjs/transformer/project-bundle.js

@@ -16,7 +16,7 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.findManuscriptById = exports.findLatestManuscriptSubmission = exports.findManuscriptModelByType = exports.findJournal = exports.findManuscript = exports.parseProjectBundle = void 0;
-const manuscripts_json_schema_1 = require("@manuscripts/manuscripts-json-schema");
+const json_schema_1 = require("@manuscripts/json-schema");
 const decode_1 = require("./decode");
 const object_types_1 = require("./object-types");
 const parseProjectBundle = (projectBundle, manuscriptID) => {
@@ -32,7 +32,7 @@ const parseProjectBundle = (projectBundle, manuscriptID) => {
     return { doc, modelMap };
 };
 exports.parseProjectBundle = parseProjectBundle;
-const isManuscript = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Manuscript);
+const isManuscript = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Manuscript);
 const findManuscript = (modelMap) => {
     for (const model of modelMap.values()) {
         if (isManuscript(model)) {
@@ -42,7 +42,7 @@ const findManuscript = (modelMap) => {
     throw new Error('No manuscript found');
 };
 exports.findManuscript = findManuscript;
-const isJournal = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Journal);
+const isJournal = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Journal);
 const findJournal = (modelMap) => {
     for (const model of modelMap.values()) {
         if (isJournal(model)) {
@@ -63,7 +63,7 @@ const findManuscriptModelByType = (modelMap, manuscript, objectType) => {
     }
 };
 exports.findManuscriptModelByType = findManuscriptModelByType;
-const isSubmission = (0, object_types_1.hasObjectType)(manuscripts_json_schema_1.ObjectTypes.Submission);
+const isSubmission = (0, object_types_1.hasObjectType)(json_schema_1.ObjectTypes.Submission);
 const newestFirst = (a, b) => b.createdAt - a.createdAt;
 const findLatestManuscriptSubmission = (modelMap, manuscript) => {
     const submissions = [];