@macrostrat/column-views 2.3.0 → 2.3.2

package/dist/node/column-views.b6e86cf0.js.map

@@ -1 +0,0 @@
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a.default : a;\n}\n\nfunction $parcel$export(e, n, v, s) {\n  Object.defineProperty(e, n, {get: v, set: s, enumerable: true, configurable: true});\n}\n\n      var $parcel$global = globalThis;\n    \nvar $parcel$modules = {};\nvar $parcel$inits = {};\n\nvar parcelRequire = $parcel$global[\"parcelRequirea149\"];\n\nif (parcelRequire == null) {\n  parcelRequire = function(id) {\n    if (id in $parcel$modules) {\n      return $parcel$modules[id].exports;\n    }\n    if (id in $parcel$inits) {\n      var init = $parcel$inits[id];\n      delete $parcel$inits[id];\n      var module = {id: id, exports: {}};\n      $parcel$modules[id] = module;\n      init.call(module.exports, module, module.exports);\n      return module.exports;\n    }\n    var err = new Error(\"Cannot find module '\" + id + \"'\");\n    err.code = 'MODULE_NOT_FOUND';\n    throw err;\n  };\n\n  parcelRequire.register = function register(id, init) {\n    $parcel$inits[id] = init;\n  };\n\n  $parcel$global[\"parcelRequirea149\"] = parcelRequire;\n}\n\nvar parcelRegister = parcelRequire.register;\nvar $9cea14fa75e12a56$exports = {};\n\n$parcel$export($9cea14fa75e12a56$exports, \"PBDBOccurrencesMatrix\", () => $9cea14fa75e12a56$export$652730986cccff7a);\n$parcel$export($9cea14fa75e12a56$exports, \"FossilDataType\", () => (parcelRequire(\"dx7no\")).FossilDataType);\n\n\nvar $dx7no = parcelRequire(\"dx7no\");\n\n\n\n\nvar $wtIgl = parcelRequire(\"wtIgl\");\n\nvar $f7qDU = parcelRequire(\"f7qDU\");\n\nconst $9cea14fa75e12a56$var$h = (0, $1vN9E$macrostrathyper).styled((0, (/*@__PURE__*/$parcel$interopDefault($f7qDU))));\nfunction $9cea14fa75e12a56$export$652730986cccff7a({ columnID: columnID }) {\n    /* A column for a matrix of taxon occurrences displayed as a table beside the main column. This will\n  eventually be extended with first/last occurrence markers and range bars.\n   */ const data = (0, $dx7no.useFossilData)(columnID, (0, $dx7no.FossilDataType).Occurrences);\n    const col = (0, $wtIgl.useMacrostratColumnData)();\n    const scale = (0, $wtIgl.useCompositeScale)();\n    if (data == null) return null;\n    const data1 = (0, $1vN9E$group)(data, (d)=>d.unit_id);\n    // convert the data to a map\n    const occurrenceMap = new Map(data1);\n    const matrix = $9cea14fa75e12a56$var$createOccurrenceMatrix(col.units, occurrenceMap, col.axisType);\n    const { taxonRanges: taxonRanges } = matrix;\n    const padding = 16;\n    const spacing = 16;\n    const taxonEntries = Array.from(taxonRanges.entries());\n    //const taxon = taxonEntries.slice(0, 50); // limit to top 50 taxa\n    const width = padding * 2 + spacing * taxonEntries.length;\n    return $9cea14fa75e12a56$var$h((0, $1vN9E$Box), {\n        className: \"taxon-ranges\",\n        width: width,\n        height: col.totalHeight\n    }, [\n        $9cea14fa75e12a56$var$h($9cea14fa75e12a56$var$TaxonOccurrenceLabels, {\n            taxonEntries: taxonEntries,\n            padding: padding,\n            spacing: spacing,\n            scale: scale\n        }),\n        $9cea14fa75e12a56$var$h((0, $1vN9E$ColumnSVG), {\n            width: padding * 2 + spacing * taxonEntries.length\n        }, $9cea14fa75e12a56$var$h(\"g.taxa-occurrences-matrix\", taxonEntries.map(([taxonName, ranges], rowIndex)=>{\n            const xPosition = padding + rowIndex * spacing;\n            return $9cea14fa75e12a56$var$h(\"g\", {\n                transform: `translate(${xPosition})`\n            }, [\n                ranges.map(([top, bottom])=>{\n                    return $9cea14fa75e12a56$var$h(\"line\", {\n                        y1: scale(top),\n                        y2: scale(bottom)\n                    });\n                })\n            ]);\n        })))\n    ]);\n}\nfunction $9cea14fa75e12a56$var$TaxonOccurrenceLabels({ taxonEntries: taxonEntries, padding: padding, spacing: spacing, scale: scale }) {\n    return $9cea14fa75e12a56$var$h(\"div.taxon-labels\", [\n        taxonEntries.map(([taxonName, ranges], rowIndex)=>{\n            const top = ranges[0]?.[0] ?? 0;\n            let topPx = scale(top) - 20;\n            if (topPx < 200) topPx = 0;\n            return $9cea14fa75e12a56$var$h($9cea14fa75e12a56$var$TaxonLabel, {\n                top: topPx,\n                left: padding + rowIndex * spacing,\n                taxonName: taxonName\n            });\n        })\n    ]);\n}\nfunction $9cea14fa75e12a56$var$TaxonLabel({ top: top, left: left, taxonName: taxonName }) {\n    const ref = (0, $1vN9E$useRef)();\n    const textSize = (0, $1vN9E$useElementSize)(ref);\n    const labelWidth = textSize?.height ?? 200;\n    return $9cea14fa75e12a56$var$h(\"div.taxon-label\", {\n        style: {\n            top: `${top}px`,\n            marginLeft: `${left}px`,\n            \"--label-width\": `${labelWidth}px`\n        }\n    }, $9cea14fa75e12a56$var$h(\"div.taxon-label-inner\", $9cea14fa75e12a56$var$h(\"div.taxon-label-text\", {\n        ref: ref\n    }, taxonName)));\n}\nfunction $9cea14fa75e12a56$var$TaxonOccurrenceEntry({ xPosition: xPosition, ranges: ranges, scale: scale, name: name }) {\n    return $9cea14fa75e12a56$var$h(\"g\", {\n        transform: `translate(${xPosition})`\n    }, [\n        ranges.map(([top, bottom])=>{\n            return $9cea14fa75e12a56$var$h(\"line\", {\n                y1: scale(top),\n                y2: scale(bottom)\n            });\n        })\n    ]);\n}\nfunction $9cea14fa75e12a56$var$createOccurrenceMatrix(units, data, axisType = (0, $1vN9E$ColumnAxisType).AGE) {\n    const taxonUnitMap = new Map();\n    const taxonOccurrenceMap = new Map();\n    for (const [unit_id, occurrences] of data.entries())for (const occ of occurrences){\n        const taxonName = occ.best_name ?? occ.taxon_name;\n        if (!taxonUnitMap.has(taxonName)) {\n            taxonUnitMap.set(taxonName, new Set());\n            taxonOccurrenceMap.set(taxonName, []);\n        }\n        taxonUnitMap.get(taxonName).add(unit_id);\n        taxonOccurrenceMap.get(taxonName).push(occ);\n    }\n    // sort the taxon occurrence map by number of occurrences\n    const sortedTaxa = Array.from(taxonUnitMap.entries()).sort((a, b)=>{\n        // Sort alphabetically by taxon name\n        return b[0].localeCompare(a[0]);\n    });\n    const taxonRanges = new Map();\n    for (const [taxonName, unitSet] of taxonUnitMap.entries())taxonRanges.set(taxonName, $9cea14fa75e12a56$var$accumulatePresenceDomains(units, unitSet, axisType));\n    return {\n        occurrenceMap: data,\n        taxonUnitMap: new Map(sortedTaxa),\n        taxonOccurrenceMap: taxonOccurrenceMap,\n        taxonRanges: taxonRanges\n    };\n}\nfunction $9cea14fa75e12a56$var$accumulatePresenceDomains(unit, presenceUnits, axisType) {\n    const domains = [];\n    let currentDomain = null;\n    for (const u of unit){\n        if (presenceUnits.has(u.unit_id)) {\n            if (currentDomain == null) {\n                if (axisType == (0, $1vN9E$ColumnAxisType).DEPTH || axisType == (0, $1vN9E$ColumnAxisType).HEIGHT) currentDomain = [\n                    u.t_pos,\n                    u.b_pos\n                ];\n                else currentDomain = [\n                    u.t_age,\n                    u.b_age\n                ];\n            } else if (axisType == (0, $1vN9E$ColumnAxisType).DEPTH || axisType == (0, $1vN9E$ColumnAxisType).HEIGHT) currentDomain[1] = u.b_pos;\n            else currentDomain[1] = u.b_age;\n        } else if (currentDomain != null) {\n            domains.push(currentDomain);\n            currentDomain = null;\n        }\n    }\n    if (currentDomain != null) domains.push(currentDomain);\n    return domains;\n}\n\n\nexport {$9cea14fa75e12a56$export$652730986cccff7a as PBDBOccurrencesMatrix, $8e174c7ae24a4598$export$a990c76b38782f57 as FossilDataType};\n//# sourceMappingURL=column-views.b6e86cf0.js.map\n","import hyper from \"@macrostrat/hyper\";\nimport { FossilDataType, PBDBOccurrence, useFossilData } from \"./provider\";\nimport { Box, useElementSize } from \"@macrostrat/ui-components\";\nimport { group } from \"d3-array\";\nimport { ColumnAxisType, ColumnSVG } from \"@macrostrat/column-components\";\nimport {\n  useMacrostratColumnData,\n  useCompositeScale,\n} from \"../../data-provider\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport styles from \"./taxon-ranges.module.sass\";\nimport { useRef } from \"react\";\n\nconst h = hyper.styled(styles);\n\nexport { FossilDataType };\n\nexport function PBDBOccurrencesMatrix({ columnID }) {\n  /* A column for a matrix of taxon occurrences displayed as a table beside the main column. This will\n  eventually be extended with first/last occurrence markers and range bars.\n   */\n  const data = useFossilData(columnID, FossilDataType.Occurrences);\n  const col = useMacrostratColumnData();\n  const scale = useCompositeScale();\n\n  if (data == null) return null;\n\n  const data1 = group(data, (d) => d.unit_id);\n\n  // convert the data to a map\n  const occurrenceMap = new Map(data1);\n\n  const matrix = createOccurrenceMatrix(col.units, occurrenceMap, col.axisType);\n\n  const { taxonRanges } = matrix;\n\n  const padding = 16;\n  const spacing = 16;\n\n  const taxonEntries = Array.from(taxonRanges.entries());\n  //const taxon = taxonEntries.slice(0, 50); // limit to top 50 taxa\n\n  const width = padding * 2 + spacing * taxonEntries.length;\n\n  return h(Box, { className: \"taxon-ranges\", width, height: col.totalHeight }, [\n    h(TaxonOccurrenceLabels, {\n      taxonEntries,\n      padding,\n      spacing,\n      scale,\n    }),\n    h(\n      ColumnSVG,\n      {\n        width: padding * 2 + spacing * taxonEntries.length,\n      },\n      h(\n        \"g.taxa-occurrences-matrix\",\n        taxonEntries.map(([taxonName, ranges], rowIndex) => {\n          const xPosition = padding + rowIndex * spacing;\n          return h(\"g\", { transform: `translate(${xPosition})` }, [\n            ranges.map(([top, bottom]) => {\n              return h(\"line\", {\n                y1: scale(top),\n                y2: scale(bottom),\n              });\n            }),\n          ]);\n        }),\n      ),\n    ),\n  ]);\n}\n\nfunction TaxonOccurrenceLabels({ taxonEntries, padding, spacing, scale }) {\n  return h(\"div.taxon-labels\", [\n    taxonEntries.map(([taxonName, ranges], rowIndex) => {\n      const top = ranges[0]?.[0] ?? 0;\n      let topPx = scale(top) - 20;\n      if (topPx < 200) topPx = 0;\n\n      return h(TaxonLabel, {\n        top: topPx,\n        left: padding + rowIndex * spacing,\n        taxonName,\n      });\n    }),\n  ]);\n}\n\nfunction TaxonLabel({ top, left, taxonName }) {\n  const ref = useRef();\n  const textSize = useElementSize(ref);\n  const labelWidth = textSize?.height ?? 200;\n  return h(\n    \"div.taxon-label\",\n    {\n      style: {\n        top: `${top}px`,\n        marginLeft: `${left}px`,\n        \"--label-width\": `${labelWidth}px`,\n      },\n    },\n    h(\"div.taxon-label-inner\", h(\"div.taxon-label-text\", { ref }, taxonName)),\n  );\n}\n\ntype TaxonUnitMap = Map<string, Set<number>>;\n\ninterface OccurrenceMatrixData {\n  occurrenceMap: Map<number, PBDBOccurrence[]>; // Map of unit IDs to occurrences (original data)\n  taxonUnitMap: TaxonUnitMap; // Map of taxon names to sets of unit IDs\n  taxonOccurrenceMap: Map<string, PBDBOccurrence[]>; // Map of taxon names to occurrences\n  taxonRanges: Map<string, [number, number][]>; // Map of taxon names to [top, bottom] pixel ranges\n}\n\nfunction TaxonOccurrenceEntry({\n  xPosition,\n  ranges,\n  scale,\n  name,\n}: {\n  xPosition: number;\n  units: Set<number>;\n}) {\n  return h(\"g\", { transform: `translate(${xPosition})` }, [\n    ranges.map(([top, bottom]) => {\n      return h(\"line\", {\n        y1: scale(top),\n        y2: scale(bottom),\n      });\n    }),\n  ]);\n}\n\nfunction createOccurrenceMatrix(\n  units: UnitLong[],\n  data: Map<number, PBDBOccurrence[]>,\n  axisType: ColumnAxisType = ColumnAxisType.AGE,\n): OccurrenceMatrixData {\n  const taxonUnitMap = new Map<string, Set<number>>();\n  const taxonOccurrenceMap = new Map<string, PBDBOccurrence[]>();\n\n  for (const [unit_id, occurrences] of data.entries()) {\n    for (const occ of occurrences) {\n      const taxonName = occ.best_name ?? occ.taxon_name;\n      if (!taxonUnitMap.has(taxonName)) {\n        taxonUnitMap.set(taxonName, new Set());\n        taxonOccurrenceMap.set(taxonName, []);\n      }\n      taxonUnitMap.get(taxonName).add(unit_id);\n      taxonOccurrenceMap.get(taxonName).push(occ);\n    }\n  }\n\n  // sort the taxon occurrence map by number of occurrences\n  const sortedTaxa = Array.from(taxonUnitMap.entries()).sort((a, b) => {\n    // Sort alphabetically by taxon name\n    return b[0].localeCompare(a[0]);\n  });\n\n  const taxonRanges = new Map<string, [number, number][]>();\n  for (const [taxonName, unitSet] of taxonUnitMap.entries()) {\n    taxonRanges.set(\n      taxonName,\n      accumulatePresenceDomains(units, unitSet, axisType),\n    );\n  }\n\n  return {\n    occurrenceMap: data,\n    taxonUnitMap: new Map(sortedTaxa),\n    taxonOccurrenceMap: taxonOccurrenceMap,\n    taxonRanges,\n  };\n}\n\nfunction accumulatePresenceDomains(\n  unit: UnitLong[],\n  presenceUnits: Set<number>,\n  axisType: ColumnAxisType,\n): Array<[number, number]> {\n  const domains: Array<[number, number]> = [];\n  let currentDomain: [number, number] | null = null;\n\n  for (const u of unit) {\n    if (presenceUnits.has(u.unit_id)) {\n      if (currentDomain == null) {\n        if (\n          axisType == ColumnAxisType.DEPTH ||\n          axisType == ColumnAxisType.HEIGHT\n        ) {\n          currentDomain = [u.t_pos, u.b_pos];\n        } else {\n          currentDomain = [u.t_age, u.b_age];\n        }\n      } else {\n        if (\n          axisType == ColumnAxisType.DEPTH ||\n          axisType == ColumnAxisType.HEIGHT\n        ) {\n          currentDomain[1] = u.b_pos;\n        } else {\n          currentDomain[1] = u.b_age;\n        }\n      }\n    } else {\n      if (currentDomain != null) {\n        domains.push(currentDomain);\n        currentDomain = null;\n      }\n    }\n  }\n\n  if (currentDomain != null) {\n    domains.push(currentDomain);\n  }\n\n  return domains;\n}\n"],"names":["$1vN9E$macrostrathyper","Box","$1vN9E$Box","useElementSize","$1vN9E$useElementSize","group","$1vN9E$group","ColumnSVG","$1vN9E$ColumnSVG","ColumnAxisType","$1vN9E$ColumnAxisType","useRef","$1vN9E$useRef","$parcel$export","e","n","v","s","Object","defineProperty","get","set","enumerable","configurable","$parcel$global","globalThis","$parcel$modules","$parcel$inits","parcelRequire","id","exports","init","module","call","err","Error","code","register","$9cea14fa75e12a56$exports","$9cea14fa75e12a56$export$652730986cccff7a","FossilDataType","$dx7no","$wtIgl","$f7qDU","$9cea14fa75e12a56$var$h","styled","a","__esModule","default","columnID","data","useFossilData","Occurrences","col","useMacrostratColumnData","scale","useCompositeScale","occurrenceMap","Map","d","unit_id","taxonRanges","$9cea14fa75e12a56$var$createOccurrenceMatrix","units","axisType","AGE","taxonUnitMap","taxonOccurrenceMap","occurrences","entries","occ","taxonName","best_name","taxon_name","has","Set","add","push","sortedTaxa","Array","from","sort","b","localeCompare","unitSet","$9cea14fa75e12a56$var$accumulatePresenceDomains","unit","presenceUnits","domains","currentDomain","u","DEPTH","HEIGHT","t_pos","b_pos","t_age","b_age","taxonEntries","className","width","padding","spacing","length","height","totalHeight","$9cea14fa75e12a56$var$TaxonOccurrenceLabels","map","ranges","rowIndex","transform","top","bottom","y1","y2","topPx","$9cea14fa75e12a56$var$TaxonLabel","left","ref","textSize","labelWidth","style","marginLeft","PBDBOccurrencesMatrix","$8e174c7ae24a4598$export$a990c76b38782f57"],"version":3,"file":"column-views.b6e86cf0.js.map","sourceRoot":"../../../../"}

package/dist/node/column-views.ec7cc7cc.js

@@ -1,2 +0,0 @@
-import"./column-views.1d064426.js";import"./column-views.46efb749.js";import e from"@macrostrat/hyper";import{useAPIResult as t}from"@macrostrat/ui-components";var n=globalThis,r={},a={},o=n.parcelRequirea149;null==o&&((o=function(e){if(e in r)return r[e].exports;if(e in a){var t=a[e];delete a[e];var n={id:e,exports:{}};return r[e]=n,t.call(n.exports,n,n.exports),n.exports}var o=Error("Cannot find module '"+e+"'");throw o.code="MODULE_NOT_FOUND",o}).register=function(e,t){a[e]=t},n.parcelRequirea149=o),o.register,Object.defineProperty({},"SGPMeasurementsColumn",{get:()=>s,set:void 0,enumerable:!0,configurable:!0});var l=o("kIQUG"),u=o("wtIgl");function s({columnID:n,color:r="magenta"}){let a=function({col_id:e}){return t("https://dev.macrostrat.org/api/pg/sgp_unit_matches",{col_id:`eq.${e}`},e=>e)}({col_id:n}),{axisType:o,units:s}=(0,u.useMacrostratColumnData)(),c=(0,u.useCompositeScale)();if(null==a||null==s||null==c)return null;let m=function(e,t,n,r){let a=e.map(e=>{let t=e.sgp_samples;if(null==t||0===t.length)return null;let a=(0,l.standardizeMeasurementHeight)({unit_id:e.unit_id},n,r);return null==a?null:(t.sort((e,t)=>e.id-t.id),{...a,data:t,id:e.unit_id})}).filter(Boolean);return(0,l.groupNotesByPixelDistance)(a,t,r,5)}(a,c,s,o);return e(l.BaseMeasurementsColumn,{data:m,noteComponent:i,focusedNoteComponent:i})}function i(t){let{note:n,focused:r}=t,a=n?.data;return null==a||0===a.length?null:e(l.TruncatedList,{className:"sgp-samples",data:a,itemRenderer:t=>e("span",t.data.name),maxItems:r?1/0:5})}export{s as SGPMeasurementsColumn};
-//# sourceMappingURL=column-views.ec7cc7cc.js.map

package/dist/node/column-views.ec7cc7cc.js.map

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Infinity : 5\n    });\n}\nfunction $48680a4cd2abcbe4$var$prepareSGPData(data, scale, units, axisType) {\n    // Find matching units for samples\n    const d1 = data.map((sample)=>{\n        const data = sample.sgp_samples;\n        if (data == null || data.length === 0) return null;\n        const heightData = (0, $kIQUG.standardizeMeasurementHeight)({\n            unit_id: sample.unit_id\n        }, units, axisType);\n        if (heightData == null) return null;\n        data.sort((a, b)=>a.id - b.id);\n        return {\n            ...heightData,\n            data: data,\n            id: sample.unit_id\n        };\n    }).filter(Boolean);\n    return (0, $kIQUG.groupNotesByPixelDistance)(d1, scale, axisType, 5);\n}\n\n\nexport {$48680a4cd2abcbe4$export$c49cf57576706bab as SGPMeasurementsColumn};\n//# sourceMappingURL=column-views.ec7cc7cc.js.map\n","import h from \"@macrostrat/hyper\";\nimport { useAPIResult } from \"@macrostrat/ui-components\";\nimport {\n  BaseMeasurementsColumn,\n  groupNotesByPixelDistance,\n  standardizeMeasurementHeight,\n  TruncatedList,\n} from \"./base\";\nimport { UnitLong } from \"@macrostrat/api-types\";\nimport { ColumnAxisType } from \"@macrostrat/column-components\";\nimport {\n  useCompositeScale,\n  useMacrostratColumnData,\n} from \"../../data-provider\";\nimport { CompositeColumnScale } from \"../../prepare-units/composite-scale\";\n\nfunction useSGPData({ col_id }) {\n  const res = useAPIResult(\n    \"https://dev.macrostrat.org/api/pg/sgp_unit_matches\",\n    {\n      col_id: `eq.${col_id}`,\n    },\n    (d) => d,\n  );\n  return res;\n}\n\ninterface SGPSampleData {\n  col_id: number;\n  unit_id: number;\n  sgp_samples: { name: string; id: number }[];\n}\n\nexport function SGPMeasurementsColumn({ columnID, color = \"magenta\" }) {\n  const data: SGPSampleData[] | null = useSGPData({ col_id: columnID });\n  const { axisType, units } = useMacrostratColumnData();\n  const scale = useCompositeScale();\n\n  if (data == null || units == null || scale == null) return null;\n\n  const data1 = prepareSGPData(data, scale, units, axisType);\n\n  return h(BaseMeasurementsColumn, {\n    data: data1,\n    noteComponent: SGPSamplesNote,\n    focusedNoteComponent: SGPSamplesNote,\n  });\n}\n\nfunction SGPSamplesNote(props) {\n  const { note, focused } = props;\n  const sgp_samples = note?.data;\n\n  if (sgp_samples == null || sgp_samples.length === 0) return null;\n\n  return h(TruncatedList, {\n    className: \"sgp-samples\",\n    data: sgp_samples,\n    itemRenderer: (p) => h(\"span\", p.data.name),\n    maxItems: focused ? 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package/dist/node/column-views.fac4baff.js

@@ -1,2 +0,0 @@
-import{createAPIContext as t,useAsyncMemo as a}from"@macrostrat/ui-components";let e="https://paleobiodb.org/data1.2";t({baseURL:e,unwrapResponse:t=>t.records});var n,c=((n={}).Occurrences="occs",n.Collections="colls",n);function l(t,e="colls"){return a(async()=>null==t?null:await r(t,e),[t,e])}async function s(t,a){if("colls"!==a)return[];let e=await fetch(`https://macrostrat.org/api/fossils?col_id=${t}`);return(await e.json()).success.data}async function o(t,a){let n=await fetch(e+`/${a}/list.json?ms_column=${t}&show=mslink,stratext`);return(await n.json()).records.map("colls"==a?u:i)}async function r(t,a){let[e,n]=await Promise.all([s(t,a),o(t,a)]);return[...e,...n]}function i(t){if(null==t.msu||null==t.msc)return t;let a=parseInt(t.msu.replace(/^\w+:/,"")),e=parseInt(t.msc.replace(/^\w+:/,"")),n=parseInt(t.oid.replace(/^occ:/,"")),c=parseInt(t.cid.replace(/^col:/,""));return{...t,unit_id:a,col_id:e,taxon_name:t.tna,best_name:t.idn??t.tna,occ_id:n,cltn_id:c,cltn_name:t.nam}}function u(t){let a=null,e=null;null!=t.msu&&(a=parseInt(t.msu.replace(/^\w+:/,""))),null!=t.msc&&(e=parseInt(t.msc.replace(/^\w+:/,"")));let n=t.tna,c=null;null!=t.oid&&t.oid.startsWith("occ:")&&(c=parseInt(t.oid.replace(/^occ:/,""))),null!=t.idn&&(n=t.idn);let l=t.cltn_id;return null!=t.oid&&t.oid.startsWith("col:")?l=parseInt(t.oid.replace(/^col:/,"")):null!=t.cid&&t.cid.startsWith("col:")&&(l=parseInt(t.cid.replace(/^col:/,""))),{...t,unit_id:a,col_id:e,taxon_name:n,occ_id:c,cltn_id:l,cltn_name:t.nam,t_age:t.t_age,b_age:t.b_age}}export{c as FossilDataType,l as useFossilData};
-//# sourceMappingURL=column-views.fac4baff.js.map

package/dist/node/column-views.fac4baff.js.map

@@ -1 +0,0 @@
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Here\n    // we create a unified view of data over both sources.\n    return (0, $lb6L3$useAsyncMemo)(async ()=>{\n        if (col_id == null) return null;\n        return await $8e174c7ae24a4598$var$fetchFossilData(col_id, type);\n    }, [\n        col_id,\n        type\n    ]);\n}\nasync function $8e174c7ae24a4598$var$fetchMacrostratFossilData(col_id, type) {\n    if (type !== \"colls\") // Macrostrat API only supports collections\n    return [];\n    // Fetch fossil collections linked to columns from the Macrostrat API\n    const resp = await fetch(`https://macrostrat.org/api/fossils?col_id=${col_id}`);\n    const res = await resp.json();\n    // Create collections from Macrostrat data\n    return res.success.data;\n}\nasync function $8e174c7ae24a4598$var$fetchPDBDFossilData(col_id, type) {\n    // Note: show=rank does not work on training PBDB server\n    const resp = await fetch($8e174c7ae24a4598$var$pbdbAPIBase + `/${type}/list.json?ms_column=${col_id}&show=mslink,stratext`);\n    const res = await resp.json();\n    return res.records.map(type == \"colls\" ? $8e174c7ae24a4598$var$createMacrostratCollection : $8e174c7ae24a4598$var$preprocessOccurrence);\n}\nasync function $8e174c7ae24a4598$var$fetchFossilData(colID, type) {\n    const [macrostratData, pbdbData] = await Promise.all([\n        $8e174c7ae24a4598$var$fetchMacrostratFossilData(colID, type),\n        $8e174c7ae24a4598$var$fetchPDBDFossilData(colID, type)\n    ]);\n    return [\n        ...macrostratData,\n        ...pbdbData\n    ];\n}\nfunction $8e174c7ae24a4598$var$preprocessOccurrence(d) {\n    if (d.msu == null || d.msc == null) return d;\n    /* Preprocess data for an occurrence into a Macrostrat-like format */ // Standardize names of Macrostrat units and columns\n    const unit_id = parseInt(d.msu.replace(/^\\w+:/, \"\"));\n    const col_id = parseInt(d.msc.replace(/^\\w+:/, \"\"));\n    // taxon names may be stored in different fields\n    const occ_id = parseInt(d.oid.replace(/^occ:/, \"\"));\n    const cltn_id = parseInt(d.cid.replace(/^col:/, \"\"));\n    return {\n        ...d,\n        unit_id: unit_id,\n        col_id: col_id,\n        taxon_name: d.tna,\n        best_name: d.idn ?? d.tna,\n        occ_id: occ_id,\n        cltn_id: cltn_id,\n        cltn_name: d.nam\n    };\n}\nfunction $8e174c7ae24a4598$var$createMacrostratCollection(d) {\n    /* Preprocess data for a collection into a Macrostrat-like format */ let unit_id = null;\n    let col_id = null;\n    // Standardize names of Macrostrat units and columns\n    if (d.msu != null) unit_id = parseInt(d.msu.replace(/^\\w+:/, \"\"));\n    if (d.msc != null) col_id = parseInt(d.msc.replace(/^\\w+:/, \"\"));\n    // taxon names may be stored in different fields\n    let taxon_name = d.tna;\n    let occ_id = null;\n    if (d.oid != null && d.oid.startsWith(\"occ:\")) occ_id = parseInt(d.oid.replace(/^occ:/, \"\"));\n    if (d.idn != null) taxon_name = d.idn;\n    let cltn_id = d.cltn_id;\n    if (d.oid != null && d.oid.startsWith(\"col:\")) cltn_id = parseInt(d.oid.replace(/^col:/, \"\"));\n    else if (d.cid != null && d.cid.startsWith(\"col:\")) cltn_id = parseInt(d.cid.replace(/^col:/, \"\"));\n    return {\n        ...d,\n        unit_id: unit_id,\n        col_id: col_id,\n        taxon_name: taxon_name,\n        occ_id: occ_id,\n        cltn_id: cltn_id,\n        cltn_name: d.nam,\n        t_age: d.t_age,\n        b_age: d.b_age\n    };\n}\n\n\nexport {$8e174c7ae24a4598$export$a990c76b38782f57 as FossilDataType, $8e174c7ae24a4598$export$e6af757fa9780077 as useFossilData};\n//# sourceMappingURL=column-views.fac4baff.js.map\n","import {\n  createAPIContext,\n  useAPIResult,\n  useAsyncMemo,\n} from \"@macrostrat/ui-components\";\n\nconst responseUnwrapper = (d) => d.records;\n\nconst pbdbAPIBase = \"https://paleobiodb.org/data1.2\";\n\nconst pbdbAPIContext = createAPIContext({\n  baseURL: pbdbAPIBase,\n  unwrapResponse: responseUnwrapper,\n});\n\nexport enum FossilDataType {\n  Occurrences = \"occs\",\n  Collections = \"colls\",\n}\n\nexport interface PBDBEntity {\n  unit_id: number;\n  col_id: number;\n  cltn_id: number;\n  // For eODP, slb/slu are used to store the heights of fossil locations found in measured sections.\n  // They may have a more general set of uses as well but these are not currently explored.\n  slb?: string; // The local bed in which the fossil was found\n  slu?: string; // The unit of measurement used to designate the local bed\n}\n\nexport interface PBDBCollection extends PBDBEntity {\n  cltn_name: string;\n  pbdb_occs: number;\n  t_age: number;\n  b_age: number;\n  [key: string]: any; // Allow for additional properties\n}\n\nexport interface PBDBOccurrence extends PBDBEntity {\n  occ_id: number;\n  cltn_id: number;\n  taxon_name: string;\n  best_name: string;\n  [key: string]: any; // Allow for additional properties\n}\n\nexport function useFossilData(\n  col_id: number,\n  type = FossilDataType.Collections,\n) {\n  // Fossil links are stored in both Macrostrat and PBDB, depending on how the link was assembled. Here\n  // we create a unified view of data over both sources.\n  return useAsyncMemo(async () => {\n    if (col_id == null) return null;\n    return await fetchFossilData(col_id, type);\n  }, [col_id, type]);\n}\n\nasync function fetchMacrostratFossilData(\n  col_id: number,\n  type: FossilDataType,\n): Promise<PBDBCollection[]> {\n  if (type !== FossilDataType.Collections) {\n    // Macrostrat API only supports collections\n    return [];\n  }\n\n  // Fetch fossil collections linked to columns from the Macrostrat API\n  const resp = await fetch(\n    `https://macrostrat.org/api/fossils?col_id=${col_id}`,\n  );\n  const res = await resp.json();\n  // Create collections from Macrostrat data\n  return res.success.data;\n}\n\nasync function fetchPDBDFossilData(\n  col_id: number,\n  type: FossilDataType,\n): Promise<PBDBCollection[]> {\n  // Note: show=rank does not work on training PBDB server\n  const resp = await fetch(\n    pbdbAPIBase + `/${type}/list.json?ms_column=${col_id}&show=mslink,stratext`,\n  );\n  const res = await resp.json();\n  return res.records.map(\n    type == FossilDataType.Collections\n      ? createMacrostratCollection\n      : preprocessOccurrence,\n  );\n}\n\nasync function fetchFossilData<T extends PBDBEntity>(\n  colID: number,\n  type: FossilDataType,\n): Promise<T[]> {\n  const [macrostratData, pbdbData] = await Promise.all([\n    fetchMacrostratFossilData(colID, type),\n    fetchPDBDFossilData(colID, type),\n  ]);\n  return [...macrostratData, ...pbdbData];\n}\n\nfunction preprocessOccurrence(d): PBDBOccurrence {\n  if (d.msu == null || d.msc == null) {\n    return d;\n  }\n  /* Preprocess data for an occurrence into a Macrostrat-like format */\n  // Standardize names of Macrostrat units and columns\n  const unit_id = parseInt(d.msu.replace(/^\\w+:/, \"\"));\n  const col_id = parseInt(d.msc.replace(/^\\w+:/, \"\"));\n\n  // taxon names may be stored in different fields\n  const occ_id = parseInt(d.oid.replace(/^occ:/, \"\"));\n  const cltn_id = parseInt(d.cid.replace(/^col:/, \"\"));\n\n  return {\n    ...d,\n    unit_id,\n    col_id,\n    taxon_name: d.tna,\n    best_name: d.idn ?? d.tna,\n    occ_id,\n    cltn_id,\n    cltn_name: d.nam,\n  };\n}\n\nfunction createMacrostratCollection(d): PBDBCollection {\n  /* Preprocess data for a collection into a Macrostrat-like format */\n  let unit_id = null;\n  let col_id = null;\n  // Standardize names of Macrostrat units and columns\n  if (d.msu != null) {\n    unit_id = parseInt(d.msu.replace(/^\\w+:/, \"\"));\n  }\n  if (d.msc != null) {\n    col_id = parseInt(d.msc.replace(/^\\w+:/, \"\"));\n  }\n\n  // taxon names may be stored in different fields\n  let taxon_name = d.tna;\n  let occ_id = null;\n  if (d.oid != null && d.oid.startsWith(\"occ:\")) {\n    occ_id = parseInt(d.oid.replace(/^occ:/, \"\"));\n  }\n  if (d.idn != null) {\n    taxon_name = d.idn;\n  }\n\n  let cltn_id = d.cltn_id;\n  if (d.oid != null && d.oid.startsWith(\"col:\")) {\n    cltn_id = parseInt(d.oid.replace(/^col:/, \"\"));\n  } else if (d.cid != null && d.cid.startsWith(\"col:\")) {\n    cltn_id = parseInt(d.cid.replace(/^col:/, \"\"));\n  }\n\n  return {\n    ...d,\n    unit_id,\n    col_id,\n    taxon_name,\n    occ_id,\n    cltn_id,\n    cltn_name: d.nam,\n    t_age: d.t_age,\n    b_age: d.b_age,\n  };\n}\n"],"names":["createAPIContext","$lb6L3$createAPIContext","useAsyncMemo","$lb6L3$useAsyncMemo","$8e174c7ae24a4598$var$pbdbAPIBase","baseURL","unwrapResponse","d","records","FossilDataType","$8e174c7ae24a4598$export$a990c76b38782f57","$8e174c7ae24a4598$export$e6af757fa9780077","col_id","type","$8e174c7ae24a4598$var$fetchFossilData","$8e174c7ae24a4598$var$fetchMacrostratFossilData","resp","fetch","res","json","success","data","$8e174c7ae24a4598$var$fetchPDBDFossilData","map","$8e174c7ae24a4598$var$createMacrostratCollection","$8e174c7ae24a4598$var$preprocessOccurrence","colID","macrostratData","pbdbData","Promise","all","msu","msc","unit_id","parseInt","replace","occ_id","oid","cltn_id","cid","taxon_name","tna","best_name","idn","cltn_name","nam","startsWith","t_age","b_age","useFossilData"],"version":3,"file":"column-views.fac4baff.js.map","sourceRoot":"../../../../"}