@lzehrung/codegraph 2.1.0

package/dist/cli/install.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"install.js","sourceRoot":"","sources":["../../src/cli/install.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,oBAAoB,EACpB,uBAAuB,EACvB,kBAAkB,EAClB,oBAAoB,EACpB,qBAAqB,EACrB,kBAAkB,EAClB,yBAAyB,EACzB,uBAAuB,GAMxB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AA8B7C,SAAS,qBAAqB,CAAC,SAA4B,EAAE,UAA6B;IACxF,MAAM,KAAK,GAAG,CAAC,2BAA2B,CAAC,CAAC;IAC5C,KAAK,MAAM,CAAC,KAAK,EAAE,SAAS,CAAC,IAAI,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC;QACtD,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAC,IAAI,UAAU,KAAK,GAAG,CAAC,EAAE,CAAC;QAC3D,KAAK,CAAC,IAAI,CAAC,KAAK,QAAQ,KAAK,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,cAAc,KAAK,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC;IACzG,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAAC,OAAgC;IAC3E,MAAM,aAAa,GAAG,OAAO,CAAC,OAAO,KAAK,SAAS,IAAI,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;IAChF,IAAI,aAAa;QAAE,oBAAoB,CAAC,OAAO,CAAC,CAAC;IACjD,MAAM,iBAAiB,GAAG,OAAO,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC;IAC3D,IAAI,iBAAiB,KAAK,SAAS,EAAE,CAAC;QACpC,4BAA4B,CAAC,OAAO,CAAC,CAAC;QACtC,MAAM,QAAQ,GAAG,0BAA0B,CAAC,OAAO,EAAE,iBAAiB,CAAC,CAAC;QACxE,OAAO,CAAC,eAAe,CAAC,kBAAkB,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;QACpE,OAAO;IACT,CAAC;IAED,MAAM,OAAO,GAAG,kBAAkB,EAAE,CAAC;IACrC,MAAM,kBAAkB,GAAG,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,qBAAqB,CAAC,OAAO,CAAC,CAAC;IAC/G,MAAM,WAAW,GAAG,kBAAkB,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,kBAAkB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;IAChF,IAAI,OAAO,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE,CAAC;QAChC,MAAM,OAAO,GAAG,MAAM,oBAAoB,CAAC,WAAW,CAAC,CAAC;QACxD,IAAI,OAAO,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC9B,OAAO,CAAC,aAAa,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC;QACrC,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,eAAe,CACrB,qBAAqB,CACnB,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,EAClC,OAAO,CACR,CACF,CAAC;QACJ,CAAC;QACD,OAAO;IACT,CAAC;IAED,MAAM,UAAU,GAAG,aAAa,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,oBAAoB,EAAE,CAAC;IACrE,MAAM,QAAQ,GAAG,aAAa;QAC5B,CAAC,CAAC,EAAE;QACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;IACzF,MAAM,SAAS,GAAG,kBAAkB,IAAI,QAAQ,CAAC;IACjD,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,CAAC;QACtB,MAAM,YAAY,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC,SAAS,EAAE,EAAE,CACpD,CAAC,SAAS,CAAC,UAAU,EAAE,SAAS,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,CAAC,KAAK,EAAmB,EAAE,CAAC,KAAK,KAAK,SAAS,CAAC,CACzG,CAAC;QACF,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;QAC5C,MAAM,MAAM,GACV,OAAO,CAAC,OAAO,KAAK,SAAS;YAC3B,CAAC,CAAC,EAAE,SAAS,EAAE,KAAK,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE;YACzE,CAAC,CAAC,EAAE,WAAW,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QAC/D,MAAM,MAAM,GAAoB;YAC9B,GAAG,MAAM;YACT,QAAQ,EAAE,EAAE;YACZ,MAAM,EAAE,qBAAqB;YAC7B,YAAY;YACZ,gBAAgB,EAAE,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC;YACpD,QAAQ,EACN,OAAO,CAAC,OAAO,KAAK,SAAS;gBAC3B,CAAC,CAAC,CAAC,mCAAmC,EAAE,+BAA+B,CAAC;gBACxE,CAAC,CAAC,CAAC,+CAA+C,EAAE,2CAA2C,CAAC;SACrG,CAAC;QACF,cAAc,CAAC,OAAO,EAAE,MAAM,EAAE,qBAAqB,CAAC,CAAC;QACvD,OAAO;IACT,CAAC;IAED,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;IAC5C,MAAM,GAAG,GAAG,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;IACrC,IAAI,CAAC,MAAM,IAAI,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC;QAC9C,MAAM,SAAS,GAAG,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,YAAY,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QAC9E,MAAM,OAAO,GAAG,mBAAmB,OAAO,CAAC,OAAO,kBAAkB,CAAC;QACrE,MAAM,QAAQ,GAAG;YACf,aAAa,OAAO,CAAC,OAAO,IAAI,SAAS,YAAY;YACrD,aAAa,OAAO,CAAC,OAAO,IAAI,SAAS,QAAQ;SAClD,CAAC;QACF,IAAI,OAAO,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC9B,OAAO,CAAC,aAAa,CAAC;gBACpB,EAAE,EAAE,KAAK;gBACT,OAAO,EAAE,OAAO,CAAC,OAAO;gBACxB,KAAK,EAAE,EAAE,IAAI,EAAE,uBAAuB,EAAE,OAAO,EAAE;gBACjD,QAAQ;aACT,CAAC,CAAC;QACL,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,eAAe,CAAC,OAAO,CAAC,CAAC;YACjC,OAAO,CAAC,eAAe,CAAC,YAAY,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YACnD,OAAO,CAAC,eAAe,CAAC,UAAU,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACnD,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,IAAI,CAAC,MAAM,IAAI,CAAC,GAAG,EAAE,CAAC;QACpB,MAAM,OAAO,GAAG,MAAM,qBAAqB,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;QAClF,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;QACvC,IAAI,MAAM,GAAG,EAAE,CAAC;QAChB,IAAI,CAAC;YACH,MAAM,GAAG,MAAM,OAAO,CAAC,UAAU,CAC/B,GAAG,OAAO,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,QAAQ,kBAAkB,SAAS,CAAC,MAAM,oBAAoB,CAChH,CAAC;QACJ,CAAC;QAAC,MAAM,CAAC;YACP,MAAM,GAAG,EAAE,CAAC;QACd,CAAC;QACD,MAAM,SAAS,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;QAC9C,IAAI,SAAS,KAAK,GAAG,IAAI,SAAS,KAAK,KAAK,EAAE,CAAC;YAC7C,MAAM,MAAM,GAAoB;gBAC9B,GAAG,OAAO;gBACV,GAAG,CAAC,OAAO,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,KAAK,EAAE,CAAC;gBAClF,MAAM,EAAE,KAAK;gBACb,QAAQ;gBACR,MAAM,EAAE,UAAU;aACnB,CAAC;YACF,cAAc,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,qBAAqB,CAAC,CAAC;YAC7D,OAAO;QACT,CAAC;IACH,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,qBAAqB,CAAC,OAAO,EAAE,EAAE,SAA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package/dist/cli/invocationContext.d.ts

@@ -0,0 +1,77 @@
+import type { GraphBuildOptions } from "../graphs/types.js";
+import type { CodegraphConfig } from "../config.js";
+import { createCurrentProjectIndexLoader } from "../indexer/load-current-index.js";
+import type { BuildOptions } from "../indexer/types.js";
+import type { NativeRuntimeMode } from "../native/treeSitterNative.js";
+import type { ProjectFileDiscoveryOptions } from "../util/projectFiles.js";
+import { type ParsedCliArgs } from "./options.js";
+export type CliGraphFlags = {
+    fast: boolean;
+    resolveNodeModules: boolean;
+    dynamicImportHeuristics: boolean;
+    resolutionHints: string[];
+};
+/**
+ * Everything derivable from the parsed argv before the project config and
+ * discovery plan are loaded. Early command table entries (version, doctor,
+ * skill, install, sql, chunk) run against this context only.
+ */
+export type CliBaseContext = {
+    command: string;
+    parsed: ParsedCliArgs;
+    getOpt: (name: string) => string | undefined;
+    hasFlag: (name: string) => boolean;
+    reportFile: string | undefined;
+    reportEnabled: boolean;
+    nativeMode: NativeRuntimeMode;
+    useNativeWorkers: boolean;
+    workerOpts: {
+        useNativeWorkers: true;
+    } | Record<string, never>;
+    progressHandler: BuildOptions["onProgress"];
+    showBuildDiagnostics: boolean;
+    graphFlags: CliGraphFlags;
+    hasGraphOverrides: boolean;
+    buildGraphOptions: () => GraphBuildOptions;
+    gitBase: string | undefined;
+    gitHead: string | undefined;
+    changedSince: string | undefined;
+    projectRootFs: string;
+    projectRootAbs: string;
+    cliGlobDiscoveryOptions: ProjectFileDiscoveryOptions;
+    activeCliRootGlobDiscoveryOptions: ProjectFileDiscoveryOptions;
+    cliGitignoreDiscoveryOptions: ProjectFileDiscoveryOptions;
+    hasCliDiscoveryGlobs: boolean;
+};
+/** Full invocation context: base options plus config, discovery, include roots, and file resolution. */
+export type CliProjectContext = CliBaseContext & {
+    config: CodegraphConfig;
+    discoveryOptions: ProjectFileDiscoveryOptions;
+    diagnosticDiscoveryOptions: ProjectFileDiscoveryOptions;
+    includeRootDiscoveryOptions: ProjectFileDiscoveryOptions;
+    includeRoots: string[];
+    includeRootsAbs: string[];
+    buildAgentOptions: () => BuildOptions;
+    createGraphQueryIndexLoader: (graphOptions: GraphBuildOptions | undefined) => ReturnType<typeof createCurrentProjectIndexLoader>;
+    resolveFiles: () => Promise<string[]>;
+    resolveFilesFromRoots: () => Promise<string[]>;
+    listProjectFilesForScan: (scanRoot: string) => Promise<string[]>;
+    resolveChangedFilesWithDeletes: () => Promise<{
+        existingFiles: string[];
+        deletedFiles: string[];
+    } | null>;
+};
+export type CliOptionAccessors = {
+    getOpt: (name: string) => string | undefined;
+    hasFlag: (name: string) => boolean;
+};
+export declare function createCliOptionAccessors(parsed: ParsedCliArgs): CliOptionAccessors;
+/**
+ * Build the base context: shared option policy plus root/discovery-glob policy.
+ * Root-policy violations write to stderr and exit 2, matching the historical
+ * dispatcher.
+ */
+export declare function createCliBaseContext(command: string, parsed: ParsedCliArgs): CliBaseContext;
+/** Load config, merge discovery options, resolve include roots, and wire file resolution. */
+export declare function loadCliProjectContext(base: CliBaseContext): Promise<CliProjectContext>;
+//# sourceMappingURL=invocationContext.d.ts.map

package/dist/cli/invocationContext.d.ts.map

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package/dist/cli/invocationContext.js

@@ -0,0 +1,357 @@
+import fs from "node:fs";
+import path from "node:path";
+import { createCurrentProjectIndexLoader } from "../indexer/load-current-index.js";
+import { normalizePath, normalizeResolutionHints, resolveFilePathFromRoot, toProjectDisplayPath, } from "../util/paths.js";
+import { createCliProgressHandler, exitCli, getCwd, writeStderrLine } from "./context.js";
+import { parseCacheModeOption, parseOptionalNonNegativeIntegerOption } from "./options.js";
+import { assertValidIncludeRoots, parseNativeRuntimeMode, resolveCliDiscoveryGlobPolicy, resolveCliIncludeRoots, resolveCliRootPolicy, } from "./rootPolicy.js";
+let discoveryGlobHelpersPromise;
+let configHelpersPromise;
+let projectFilesHelpersPromise;
+let gitHelpersPromise;
+let includeRootsHelpersPromise;
+function loadDiscoveryGlobHelpers() {
+    discoveryGlobHelpersPromise ??= import("./discoveryGlobs.js");
+    return discoveryGlobHelpersPromise;
+}
+function loadConfigHelpers() {
+    configHelpersPromise ??= import("../config.js");
+    return configHelpersPromise;
+}
+function loadProjectFilesHelpers() {
+    projectFilesHelpersPromise ??= import("../util/projectFiles.js");
+    return projectFilesHelpersPromise;
+}
+function loadGitHelpers() {
+    gitHelpersPromise ??= import("../util/git.js");
+    return gitHelpersPromise;
+}
+function loadIncludeRootsHelpers() {
+    includeRootsHelpersPromise ??= import("../util/includeRoots.js");
+    return includeRootsHelpersPromise;
+}
+async function getDuplicateProjectPatterns() {
+    const { DEFAULT_PROJECT_PATTERNS } = await loadProjectFilesHelpers();
+    return [...DEFAULT_PROJECT_PATTERNS, "**/*.{json,jsonc,toml,txt,yaml,yml}"];
+}
+export function createCliOptionAccessors(parsed) {
+    const hasFlag = (name) => parsed.flags.has(name);
+    const getOpt = (name) => {
+        const v = parsed.options.get(name);
+        return v?.length ? v[v.length - 1] : undefined;
+    };
+    return { getOpt, hasFlag };
+}
+/**
+ * Build the base context: shared option policy plus root/discovery-glob policy.
+ * Root-policy violations write to stderr and exit 2, matching the historical
+ * dispatcher.
+ */
+export function createCliBaseContext(command, parsed) {
+    const { getOpt, hasFlag } = createCliOptionAccessors(parsed);
+    const reportFile = getOpt("--report-file");
+    const reportEnabled = hasFlag("--report") || reportFile !== undefined;
+    const nativeMode = parseNativeRuntimeMode(getOpt("--native"));
+    const useNativeWorkers = hasFlag("--workers");
+    const workerOpts = useNativeWorkers ? { useNativeWorkers: true } : {};
+    let progressPolicy = "auto";
+    if (hasFlag("--no-progress")) {
+        progressPolicy = "never";
+    }
+    else if (hasFlag("--progress")) {
+        progressPolicy = "always";
+    }
+    const showBuildDiagnostics = hasFlag("--progress");
+    const progressHandler = createCliProgressHandler(progressPolicy);
+    const graphFlags = {
+        fast: hasFlag("--fast-graph"),
+        resolveNodeModules: hasFlag("--resolve-node-modules"),
+        dynamicImportHeuristics: hasFlag("--dynamic-import-heuristics"),
+        resolutionHints: parsed.options.get("--resolution-hint") ?? [],
+    };
+    const computeHasGraphOverrides = () => graphFlags.fast ||
+        graphFlags.resolveNodeModules ||
+        graphFlags.dynamicImportHeuristics ||
+        !!graphFlags.resolutionHints.length;
+    const hasGraphOverrides = computeHasGraphOverrides();
+    const buildGraphOptions = () => ({
+        fast: graphFlags.fast,
+        resolveNodeModules: graphFlags.resolveNodeModules,
+        dynamicImportHeuristics: graphFlags.dynamicImportHeuristics,
+        ...(nativeMode !== "auto" ? { native: nativeMode } : {}),
+        ...(graphFlags.resolutionHints.length ? { resolutionHints: graphFlags.resolutionHints } : {}),
+    });
+    const changedSince = getOpt("--changed-since");
+    const gitBase = getOpt("--git-base");
+    const gitHead = getOpt("--git-head");
+    const rootOpt = getOpt("--root");
+    const rootPolicy = resolveCliRootPolicy({ command, positionals: parsed.positionals, rootOpt, cwd: getCwd });
+    if (rootPolicy.status === "error") {
+        for (const message of rootPolicy.messages) {
+            writeStderrLine(message);
+        }
+        exitCli(2);
+    }
+    const projectRootFs = rootPolicy.projectRootFs;
+    const projectRootAbs = normalizePath(projectRootFs);
+    const globPolicy = resolveCliDiscoveryGlobPolicy(command, parsed);
+    return {
+        command,
+        parsed,
+        getOpt,
+        hasFlag,
+        reportFile,
+        reportEnabled,
+        nativeMode,
+        useNativeWorkers,
+        workerOpts,
+        progressHandler,
+        showBuildDiagnostics,
+        graphFlags,
+        hasGraphOverrides,
+        buildGraphOptions,
+        gitBase,
+        gitHead,
+        changedSince,
+        projectRootFs,
+        projectRootAbs,
+        ...globPolicy,
+    };
+}
+/** Load config, merge discovery options, resolve include roots, and wire file resolution. */
+export async function loadCliProjectContext(base) {
+    const { command, parsed, getOpt, hasFlag, projectRootFs } = base;
+    const { cliGlobDiscoveryOptions, activeCliRootGlobDiscoveryOptions, cliGitignoreDiscoveryOptions, gitBase, gitHead, changedSince, graphFlags, } = base;
+    const { hasDiscoveryOptions, loadCodegraphConfig, mergeDiscoveryOptions } = await loadConfigHelpers();
+    const explicitDiscoveryOptions = mergeDiscoveryOptions(cliGlobDiscoveryOptions, cliGitignoreDiscoveryOptions);
+    const config = await loadCodegraphConfig(projectRootFs);
+    graphFlags.resolutionHints = normalizeResolutionHints([
+        ...(config.graph?.resolutionHints ?? []),
+        ...graphFlags.resolutionHints,
+    ]);
+    const hasGraphOverrides = graphFlags.fast ||
+        graphFlags.resolveNodeModules ||
+        graphFlags.dynamicImportHeuristics ||
+        !!graphFlags.resolutionHints.length;
+    const baseDiscoveryOptions = mergeDiscoveryOptions(config.discovery, cliGitignoreDiscoveryOptions);
+    const mergedDiscoveryOptions = mergeDiscoveryOptions(config.discovery, explicitDiscoveryOptions);
+    const rootFilteredDiscoveryOptions = mergeDiscoveryOptions(baseDiscoveryOptions, activeCliRootGlobDiscoveryOptions);
+    const discoveryOptions = hasDiscoveryOptions(mergedDiscoveryOptions)
+        ? { ...mergedDiscoveryOptions, globRoot: projectRootFs }
+        : {};
+    const diagnosticDiscoveryOptions = hasDiscoveryOptions(baseDiscoveryOptions)
+        ? { ...baseDiscoveryOptions, globRoot: projectRootFs }
+        : {};
+    const includeRootDiscoveryOptions = hasDiscoveryOptions(rootFilteredDiscoveryOptions)
+        ? { ...rootFilteredDiscoveryOptions, globRoot: projectRootFs }
+        : {};
+    const cliGlobDiagnostics = [];
+    const includeRoots = resolveCliIncludeRoots({
+        command,
+        positionals: parsed.positionals,
+        rootOpt: getOpt("--root"),
+        cwd: getCwd,
+    });
+    assertValidIncludeRoots(command, projectRootFs, includeRoots);
+    const includeRootsAbs = includeRoots.map((r) => normalizePath(resolveFilePathFromRoot(projectRootFs, r)));
+    const { isPathUnderIncludeRoots } = await loadIncludeRootsHelpers();
+    const isUnderIncludeRoots = (filePath) => {
+        return isPathUnderIncludeRoots(normalizePath(filePath), includeRootsAbs);
+    };
+    const displayScanRoot = (scanRoot) => {
+        const relative = normalizePath(path.relative(projectRootFs, scanRoot));
+        if (!relative)
+            return ".";
+        return relative;
+    };
+    const { diagnoseCliDiscoveryGlobs, filterFilesByCliDiscoveryGlobs } = await loadDiscoveryGlobHelpers();
+    const recordCliGlobDiagnostics = (files, scanRoot) => {
+        for (const diagnostic of diagnoseCliDiscoveryGlobs(files, scanRoot, projectRootFs, cliGlobDiscoveryOptions)) {
+            const optionName = diagnostic.kind === "include" ? "--include-glob" : "--ignore-glob";
+            let message = `Warning: ${optionName} "${diagnostic.glob}" matched no files under scan root "${displayScanRoot(diagnostic.scanRoot)}". CLI globs are relative to each active scan root.`;
+            if (diagnostic.suggestion) {
+                message += ` Did you mean "${diagnostic.suggestion}"?`;
+            }
+            cliGlobDiagnostics.push(message);
+        }
+    };
+    const flushCliGlobDiagnostics = () => {
+        for (const diagnostic of Array.from(new Set(cliGlobDiagnostics))) {
+            writeStderrLine(diagnostic);
+        }
+        cliGlobDiagnostics.length = 0;
+    };
+    const applyCliDiscoveryFilters = (files) => {
+        const rootFilteredFiles = filterFilesByCliDiscoveryGlobs(files, projectRootFs, activeCliRootGlobDiscoveryOptions);
+        if (!includeRootsAbs.length) {
+            return filterFilesByCliDiscoveryGlobs(rootFilteredFiles, projectRootFs, cliGlobDiscoveryOptions);
+        }
+        const matchedFiles = new Set();
+        for (const scanRoot of includeRootsAbs) {
+            const scanRootFiles = rootFilteredFiles.filter((filePath) => {
+                const normalizedFile = normalizePath(filePath);
+                return normalizedFile === scanRoot || normalizedFile.startsWith(`${scanRoot}/`);
+            });
+            for (const filePath of filterFilesByCliDiscoveryGlobs(scanRootFiles, scanRoot, cliGlobDiscoveryOptions)) {
+                matchedFiles.add(filePath);
+            }
+        }
+        return rootFilteredFiles.filter((filePath) => matchedFiles.has(filePath));
+    };
+    const resolveFilesFromRoots = async () => {
+        const { listProjectFiles } = await loadProjectFilesHelpers();
+        const basePatterns = command === "duplicates" ? await getDuplicateProjectPatterns() : undefined;
+        const [{ languageExtensionPatterns }, { DEFAULT_PROJECT_PATTERNS }] = await Promise.all([
+            import("../languages.js"),
+            loadProjectFilesHelpers(),
+        ]);
+        const customPatterns = languageExtensionPatterns(config.languages?.extensions);
+        const patterns = customPatterns.length
+            ? [...(basePatterns ?? DEFAULT_PROJECT_PATTERNS), ...customPatterns]
+            : basePatterns;
+        if (!includeRootsAbs.length) {
+            const diagnosticFiles = await listProjectFiles(projectRootFs, patterns, {
+                ...diagnosticDiscoveryOptions,
+                gitignoreRoot: projectRootFs,
+            });
+            recordCliGlobDiagnostics(diagnosticFiles, projectRootFs);
+            flushCliGlobDiagnostics();
+            if (!hasDiscoveryOptions(activeCliRootGlobDiscoveryOptions)) {
+                return await listProjectFiles(projectRootFs, patterns, {
+                    ...discoveryOptions,
+                    gitignoreRoot: projectRootFs,
+                });
+            }
+            return applyCliDiscoveryFilters(diagnosticFiles);
+        }
+        const normalizedRoots = includeRootsAbs;
+        const all = await Promise.all(normalizedRoots.map(async (r) => {
+            const files = await listProjectFiles(r, patterns, {
+                ...diagnosticDiscoveryOptions,
+                gitignoreRoot: projectRootFs,
+            });
+            recordCliGlobDiagnostics(files, r);
+            return files;
+        }));
+        flushCliGlobDiagnostics();
+        return applyCliDiscoveryFilters(Array.from(new Set(all.flat())));
+    };
+    const listProjectFilesForScan = async (scanRoot) => {
+        const { listProjectFiles } = await loadProjectFilesHelpers();
+        if (scanRoot === projectRootFs) {
+            return await listProjectFiles(scanRoot, undefined, discoveryOptions);
+        }
+        const files = await listProjectFiles(scanRoot, undefined, {
+            ...includeRootDiscoveryOptions,
+            gitignoreRoot: projectRootFs,
+        });
+        return filterFilesByCliDiscoveryGlobs(files, scanRoot, cliGlobDiscoveryOptions);
+    };
+    const resolveChangedFiles = async () => {
+        const { listChangedFiles } = await loadGitHelpers();
+        if (gitBase) {
+            const diffOpts = { base: gitBase };
+            if (gitHead)
+                diffOpts.head = gitHead;
+            return (await listChangedFiles(projectRootFs, diffOpts)).filter(isUnderIncludeRoots);
+        }
+        if (changedSince) {
+            return (await listChangedFiles(projectRootFs, {
+                changedSince,
+            })).filter(isUnderIncludeRoots);
+        }
+        return null;
+    };
+    const emitCliGlobDiagnosticsForChangedFiles = async (files) => {
+        if (!cliGlobDiscoveryOptions.includeGlobs?.length && !cliGlobDiscoveryOptions.ignoreGlobs?.length)
+            return;
+        const patterns = command === "duplicates" ? await getDuplicateProjectPatterns() : undefined;
+        const deletedFiles = files.filter((filePath) => !fs.existsSync(filePath));
+        const scanRoots = includeRootsAbs.length ? includeRootsAbs : [projectRootFs];
+        await Promise.all(scanRoots.map(async (scanRoot) => {
+            const { listProjectFiles } = await loadProjectFilesHelpers();
+            const currentFiles = fs.existsSync(scanRoot)
+                ? await listProjectFiles(scanRoot, patterns, {
+                    ...diagnosticDiscoveryOptions,
+                    gitignoreRoot: projectRootFs,
+                })
+                : [];
+            const deletedScanRootFiles = deletedFiles.filter((filePath) => {
+                const normalizedFile = normalizePath(filePath);
+                return normalizedFile === scanRoot || normalizedFile.startsWith(`${scanRoot}/`);
+            });
+            recordCliGlobDiagnostics(Array.from(new Set([...currentFiles, ...deletedScanRootFiles])), scanRoot);
+        }));
+        flushCliGlobDiagnostics();
+    };
+    const resolveChangedFilesWithDeletes = async () => {
+        const gitFiles = await resolveChangedFiles();
+        if (!gitFiles)
+            return null;
+        await emitCliGlobDiagnosticsForChangedFiles(gitFiles);
+        const existence = gitFiles.map((file) => ({
+            file,
+            exists: fs.existsSync(file),
+        }));
+        const existingFiles = applyCliDiscoveryFilters(existence.filter((entry) => entry.exists).map((entry) => entry.file));
+        const deletedFiles = applyCliDiscoveryFilters(existence.filter((entry) => !entry.exists).map((entry) => entry.file));
+        return { existingFiles, deletedFiles };
+    };
+    const resolveFiles = async () => {
+        const changedSet = await resolveChangedFilesWithDeletes();
+        if (changedSet) {
+            const { existingFiles, deletedFiles } = changedSet;
+            if (deletedFiles.length) {
+                writeStderrLine(`Skipping ${deletedFiles.length} deleted file(s) from git diff: ${deletedFiles
+                    .map((file) => toProjectDisplayPath(projectRootFs, file) || file)
+                    .join(", ")}`);
+            }
+            if (!existingFiles.length) {
+                writeStderrLine("No changed files detected via git diff.");
+            }
+            return existingFiles;
+        }
+        return await resolveFilesFromRoots();
+    };
+    const buildAgentOptions = () => {
+        const cache = parseCacheModeOption(getOpt("--cache"));
+        const threads = parseOptionalNonNegativeIntegerOption(getOpt("--threads"), "--threads");
+        return {
+            ...(base.progressHandler ? { onProgress: base.progressHandler } : {}),
+            discovery: discoveryOptions,
+            ...(config.languages?.extensions ? { languageExtensions: config.languages.extensions } : {}),
+            ...(cache !== undefined ? { cache } : {}),
+            ...(hasFlag("--cache-strict") ? { cacheStrict: true } : {}),
+            ...(hasFlag("--cache-verify") ? { cacheVerify: true } : {}),
+            ...(hasGraphOverrides || base.nativeMode !== "auto" ? { graph: base.buildGraphOptions() } : {}),
+            ...(base.nativeMode !== "auto" ? { native: base.nativeMode } : {}),
+            ...(threads !== undefined ? { threads } : {}),
+            ...base.workerOpts,
+        };
+    };
+    // One place decides how current-state queries load the index: the shared loader
+    // supplies the disk-cache default and the project scope encoding.
+    const createGraphQueryIndexLoader = (graphOptions) => {
+        const options = buildAgentOptions();
+        if (graphOptions)
+            options.graph = graphOptions;
+        return createCurrentProjectIndexLoader(projectRootFs, options);
+    };
+    return {
+        ...base,
+        hasGraphOverrides,
+        config,
+        discoveryOptions,
+        diagnosticDiscoveryOptions,
+        includeRootDiscoveryOptions,
+        includeRoots,
+        includeRootsAbs,
+        buildAgentOptions,
+        createGraphQueryIndexLoader,
+        resolveFiles,
+        resolveFilesFromRoots,
+        listProjectFilesForScan,
+        resolveChangedFilesWithDeletes,
+    };
+}
+//# sourceMappingURL=invocationContext.js.map

package/dist/cli/invocationContext.js.map

@@ -0,0 +1 @@
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package/dist/cli/lifecycle.d.ts

@@ -0,0 +1,11 @@
+import type { BuildOptions } from "../indexer/types.js";
+export type LifecycleCommandContext = {
+    command: "init" | "status" | "sync" | "uninit";
+    root: string;
+    buildOptions?: BuildOptions;
+    hasFlag: (name: string) => boolean;
+    writeJSONLine: (value: unknown) => void;
+    writeStdoutLine: (message: string) => void;
+};
+export declare function handleLifecycleCommand(context: LifecycleCommandContext): Promise<void>;
+//# sourceMappingURL=lifecycle.d.ts.map

package/dist/cli/lifecycle.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lifecycle.d.ts","sourceRoot":"","sources":["../../src/cli/lifecycle.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAWxD,MAAM,MAAM,uBAAuB,GAAG;IACpC,OAAO,EAAE,MAAM,GAAG,QAAQ,GAAG,MAAM,GAAG,QAAQ,CAAC;IAC/C,IAAI,EAAE,MAAM,CAAC;IACb,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,OAAO,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC;IACnC,aAAa,EAAE,CAAC,KAAK,EAAE,OAAO,KAAK,IAAI,CAAC;IACxC,eAAe,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;CAC5C,CAAC;AAEF,wBAAsB,sBAAsB,CAAC,OAAO,EAAE,uBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,CA+B5F"}

package/dist/cli/lifecycle.js

@@ -0,0 +1,81 @@
+import path from "node:path";
+import { getCodegraphLifecycleStatus, initCodegraphLifecycle, syncCodegraphLifecycle, uninitCodegraphLifecycle, } from "../lifecycle/manifest.js";
+export async function handleLifecycleCommand(context) {
+    if (context.command === "init") {
+        const result = await initCodegraphLifecycle(context.root, {
+            ...(context.buildOptions ? { buildOptions: context.buildOptions } : {}),
+            force: context.hasFlag("--force"),
+            updateGitignore: !context.hasFlag("--no-update-gitignore"),
+        });
+        writeLifecycleResult(context, result, formatSyncResult("Initialized", result));
+        return;
+    }
+    if (context.command === "sync") {
+        const result = await syncCodegraphLifecycle(context.root, {
+            ...(context.buildOptions ? { buildOptions: context.buildOptions } : {}),
+            init: context.hasFlag("--init"),
+            updateGitignore: !context.hasFlag("--no-update-gitignore"),
+        });
+        writeLifecycleResult(context, result, formatSyncResult("Synced", result));
+        return;
+    }
+    if (context.command === "uninit") {
+        const result = await uninitCodegraphLifecycle(context.root, { force: context.hasFlag("--force") });
+        writeLifecycleResult(context, result, formatUninitResult(result));
+        return;
+    }
+    const result = await getCodegraphLifecycleStatus(context.root, {
+        ...(context.buildOptions ? { buildOptions: context.buildOptions } : {}),
+    });
+    writeLifecycleResult(context, result, formatStatus(result));
+}
+function writeLifecycleResult(context, value, pretty) {
+    if (context.hasFlag("--json")) {
+        context.writeJSONLine(value);
+    }
+    else {
+        context.writeStdoutLine(pretty);
+    }
+}
+function formatSyncResult(label, result) {
+    const { added, removed } = result.changedFiles;
+    // Report added/removed explicitly rather than the net delta alone: equal adds and removes
+    // cancel out to a delta of 0, which would otherwise hide real file churn.
+    const changeLabel = added || removed ? `, +${added}/-${removed}` : "";
+    const summary = `${label} Codegraph at ${result.root}: ${result.manifest.fileCount} files${changeLabel}. Manifest: ${result.manifestPath}`;
+    if (result.gitignore?.status === "added") {
+        const gitignorePath = path.join(result.root, result.gitignore.path);
+        const rules = result.gitignore.rules?.length ? result.gitignore.rules.join(", ") : ".codegraph/, .codegraph-cache/";
+        return `${summary}\nUpdated Git ignore policy at ${gitignorePath}: added ${rules}.`;
+    }
+    if (result.gitignore?.status === "tracked") {
+        return `${summary}\nWarning: .codegraph/manifest.json is tracked by Git; the ignore policy was not changed.`;
+    }
+    return summary;
+}
+function formatUninitResult(result) {
+    if (!result.removed)
+        return `Codegraph is not initialized at ${result.root}.`;
+    return `Removed Codegraph lifecycle state at ${result.root}.`;
+}
+function formatStatus(status) {
+    if (!status.initialized) {
+        return `Codegraph is not initialized at ${status.root}. Next: ${status.suggestedNextCommand}`;
+    }
+    const fileCount = status.fileCount ? `${status.fileCount.then} then, ${status.fileCount.current} current` : "unknown";
+    const filesChanged = status.filesChanged ? "yes" : "no";
+    const configChanged = status.configChanged ? "yes" : "no";
+    const buildOptionsChanged = status.buildOptionsChanged ? "yes" : "no";
+    const analysis = status.analysis?.label ?? "unknown";
+    return [
+        `Codegraph initialized at ${status.root}.`,
+        `Last sync: ${status.lastSyncAt ?? "unknown"}`,
+        `Files: ${fileCount}`,
+        `Files changed: ${filesChanged}`,
+        `Config changed: ${configChanged}`,
+        `Build options changed: ${buildOptionsChanged}`,
+        `Analysis: ${analysis}`,
+        `Next: ${status.suggestedNextCommand}`,
+    ].join("\n");
+}
+//# sourceMappingURL=lifecycle.js.map

package/dist/cli/lifecycle.js.map

@@ -0,0 +1 @@
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package/dist/cli/links.d.ts

@@ -0,0 +1,11 @@
+import type { MarkdownLinkCheckResult } from "../documentLinks/check.js";
+export type LinksCommandContext = {
+    projectRootFs: string;
+    hasFlag: (name: string) => boolean;
+    writeJSONLine: (value: MarkdownLinkCheckResult) => void;
+    writeStdoutLine: (message: string) => void;
+    exit: (code: number) => never;
+};
+export declare function formatMarkdownLinkCheckResult(result: MarkdownLinkCheckResult, verbose: boolean): string;
+export declare function handleLinksCommand(context: LinksCommandContext): Promise<void>;
+//# sourceMappingURL=links.d.ts.map

package/dist/cli/links.d.ts.map

@@ -0,0 +1 @@
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