@lzehrung/codegraph 2.1.0

package/dist/agent/query-index/store.js

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+import { SqliteDatabase } from "../../sqlite-driver.js";
+import { brotliDecompressSync } from "node:zlib";
+import { ensureQueryIndexSchema, expectedQueryIndexVersionMetadata, readQueryIndexMetadata, } from "./schema.js";
+export const QUERY_INDEX_BUSY_TIMEOUT_MS = 250;
+/** Final cap on hydrated query-index candidates passed into scoring. */
+export const QUERY_INDEX_CANDIDATE_ROW_LIMIT = 2000;
+/** Overfetch before applying the final cap so later, higher-quality matches can survive
+ * path-ordered SQL reads and be kept once we do cheap in-memory ranking. */
+const QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT = QUERY_INDEX_CANDIDATE_ROW_LIMIT * 4;
+export function codePointLength(value) {
+    return Array.from(value).length;
+}
+export function escapeFtsTrigramTerm(term) {
+    return `"${term.replaceAll('"', '""')}"`;
+}
+function normalizedCandidateLimit(limit, fallback = QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT) {
+    if (!Number.isFinite(limit))
+        return fallback;
+    return Math.max(0, Math.min(Math.trunc(limit), QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT));
+}
+export class QueryIndexStaleError extends Error {
+    constructor() {
+        super("Query index identity does not match the loaded project snapshot.");
+        this.name = "QueryIndexStaleError";
+    }
+}
+function errorCode(error) {
+    if (!error || typeof error !== "object" || !("code" in error))
+        return undefined;
+    const code = error.code;
+    return typeof code === "string" ? code : undefined;
+}
+export function isSqliteBusyError(error) {
+    const code = errorCode(error);
+    if (code === "SQLITE_BUSY" || code === "SQLITE_LOCKED")
+        return true;
+    return error instanceof Error && /database is (?:busy|locked)/iu.test(error.message);
+}
+export function isSqliteCorruptionError(error) {
+    const code = errorCode(error);
+    if (code === "SQLITE_CORRUPT" || code === "SQLITE_NOTADB")
+        return true;
+    return (error instanceof Error && /(?:malformed|not a database|database disk image is malformed)/iu.test(error.message));
+}
+function numericId(value) {
+    const numeric = typeof value === "bigint" ? Number(value) : value;
+    if (!Number.isSafeInteger(numeric) || numeric <= 0)
+        throw new Error(`Invalid SQLite row id: ${String(value)}`);
+    return numeric;
+}
+function chunkFromRow(row) {
+    const ordinal = row.ordinal;
+    const kind = row.kind;
+    const name = row.name;
+    const text = row.text;
+    const normalizedText = row.normalized_text;
+    const startLine = row.start_line;
+    const endLine = row.end_line;
+    if (typeof ordinal !== "number" ||
+        typeof kind !== "string" ||
+        (name !== null && typeof name !== "string") ||
+        typeof text !== "string" ||
+        typeof normalizedText !== "string" ||
+        typeof startLine !== "number" ||
+        typeof endLine !== "number") {
+        return null;
+    }
+    return {
+        ordinal,
+        kind,
+        ...(typeof name === "string" ? { name } : {}),
+        text,
+        normalizedText,
+        startLine,
+        endLine,
+    };
+}
+function storedCandidateChunkFromRow(row) {
+    if (typeof row.path !== "string" || !(row.text instanceof Uint8Array))
+        return null;
+    try {
+        const text = brotliDecompressSync(row.text).toString("utf8");
+        const chunk = chunkFromRow({ ...row, text });
+        return chunk ? { ...chunk, path: row.path } : null;
+    }
+    catch {
+        return null;
+    }
+}
+export class QueryIndexStore {
+    filePath;
+    db;
+    closed = false;
+    normalizedFiles;
+    constructor(filePath) {
+        this.filePath = filePath;
+        const db = new SqliteDatabase(filePath, { timeout: QUERY_INDEX_BUSY_TIMEOUT_MS });
+        this.db = db;
+        try {
+            ensureQueryIndexSchema(db);
+            db.pragma("journal_mode = WAL");
+            db.pragma("foreign_keys = ON");
+        }
+        catch (error) {
+            db.close();
+            throw error;
+        }
+    }
+    metadata() {
+        return readQueryIndexMetadata(this.db);
+    }
+    assertReadable() {
+        this.db.prepare("SELECT count(*) AS count FROM chunk_search").get();
+    }
+    sourceIdentities() {
+        const rows = this.db.prepare("SELECT path, source_identity FROM files ORDER BY path").all();
+        const identities = new Map();
+        for (const row of rows) {
+            if (typeof row.path === "string" && typeof row.source_identity === "string") {
+                identities.set(row.path, row.source_identity);
+            }
+        }
+        return identities;
+    }
+    /**
+     * Files whose normalized text plausibly contains at least one of the given terms.
+     * Terms of 3+ codepoints are resolved through the trigram FTS index (same substring
+     * semantics as `ftsChunkCandidates`, but indexed instead of scanning every file); only
+     * terms too short for the trigram tokenizer fall back to decompressing and scanning
+     * file text directly, and only for those short terms.
+     */
+    eligibleFilePaths(normalizedTerms) {
+        if (!normalizedTerms.length)
+            return [];
+        const paths = new Set();
+        const shortTerms = [];
+        for (const term of normalizedTerms) {
+            if (codePointLength(term) < 3) {
+                shortTerms.push(term);
+                continue;
+            }
+            const rows = this.db
+                .prepare(`
+          SELECT DISTINCT files.path AS path
+          FROM chunk_search
+          JOIN chunks ON chunks.chunk_id = chunk_search.rowid
+          JOIN files ON files.file_id = chunks.file_id
+          WHERE chunk_search MATCH ?
+        `)
+                .all(escapeFtsTrigramTerm(term));
+            for (const row of rows) {
+                if (typeof row.path === "string")
+                    paths.add(row.path);
+            }
+        }
+        if (shortTerms.length) {
+            if (!this.normalizedFiles) {
+                const rows = this.db.prepare("SELECT path, normalized_text FROM files ORDER BY path").all();
+                const normalizedFiles = new Map();
+                for (const row of rows) {
+                    if (typeof row.path !== "string" || !(row.normalized_text instanceof Uint8Array)) {
+                        throw new Error("Invalid query index file normalization.");
+                    }
+                    normalizedFiles.set(row.path, brotliDecompressSync(row.normalized_text).toString("utf8"));
+                }
+                this.normalizedFiles = normalizedFiles;
+            }
+            for (const [file, normalizedText] of this.normalizedFiles) {
+                if (shortTerms.some((term) => normalizedText.includes(term)))
+                    paths.add(file);
+            }
+        }
+        return [...paths].sort((left, right) => left.localeCompare(right));
+    }
+    replaceFiles(files, deletedPaths, metadata) {
+        this.db.exec("BEGIN IMMEDIATE;");
+        try {
+            const current = readQueryIndexMetadata(this.db);
+            const expectedVersions = expectedQueryIndexVersionMetadata();
+            if (current.projectSnapshotIdentity === metadata.projectSnapshotIdentity &&
+                current.projectRootIdentity === metadata.projectRootIdentity &&
+                current.schemaVersion === expectedVersions.schemaVersion &&
+                current.normalizerVersion === expectedVersions.normalizerVersion &&
+                current.chunkerVersion === expectedVersions.chunkerVersion) {
+                this.db.exec("ROLLBACK;");
+                return "already-current";
+            }
+            const deleteFile = this.db.prepare("DELETE FROM files WHERE path = ?");
+            for (const relativePath of deletedPaths)
+                deleteFile.run(relativePath);
+            for (const file of files)
+                deleteFile.run(file.path);
+            const insertFile = this.db.prepare(`
+        INSERT INTO files(path, source_identity, surface, language, normalized_text, byte_length, line_count)
+        VALUES (?, ?, ?, ?, ?, ?, ?)
+      `);
+            const insertChunk = this.db.prepare(`
+        INSERT INTO chunks(file_id, ordinal, kind, name, start_line, end_line, text, normalized_text)
+        VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+      `);
+            for (const file of files) {
+                const inserted = insertFile.run(file.path, file.sourceIdentity, file.surface, file.language ?? null, file.normalizedText, file.byteLength, file.lineCount);
+                const fileId = numericId(inserted.lastInsertRowid);
+                for (const chunk of file.chunks) {
+                    insertChunk.run(fileId, chunk.ordinal, chunk.kind, chunk.name ?? null, chunk.startLine, chunk.endLine, chunk.text, chunk.normalizedText);
+                }
+            }
+            const upsertMetadata = this.db.prepare(`
+        INSERT INTO metadata(key, value) VALUES (?, ?)
+        ON CONFLICT(key) DO UPDATE SET value = excluded.value
+      `);
+            for (const [key, value] of Object.entries(metadata))
+                upsertMetadata.run(key, value);
+            this.db.exec("COMMIT;");
+            this.normalizedFiles = undefined;
+            this.reclaimFreeSpace();
+            return "committed";
+        }
+        catch (error) {
+            try {
+                this.db.exec("ROLLBACK;");
+            }
+            catch {
+                // Preserve the original write failure.
+            }
+            throw error;
+        }
+    }
+    /**
+     * Reclaims pages freed by deletes/rewrites so the sidecar does not grow unbounded.
+     * Incremental auto-vacuum (set in the constructor) makes this a cheap per-write
+     * PRAGMA once enabled; sidecars created before that switch to it here the first time
+     * accumulated free space crosses a threshold worth a one-time full VACUUM.
+     */
+    reclaimFreeSpace() {
+        try {
+            const mode = this.db.prepare("PRAGMA auto_vacuum").get()?.auto_vacuum;
+            if (mode === 2) {
+                this.db.exec("PRAGMA incremental_vacuum;");
+                return;
+            }
+            const freelist = this.db.prepare("PRAGMA freelist_count").get()?.freelist_count ??
+                0;
+            const pages = this.db.prepare("PRAGMA page_count").get()?.page_count ?? 0;
+            if (pages > 0 && freelist / pages > 0.15) {
+                this.db.pragma("auto_vacuum = INCREMENTAL");
+                this.db.exec("VACUUM;");
+            }
+        }
+        catch {
+            // Best-effort maintenance; never block a write on it.
+        }
+    }
+    withReadSnapshot(projectSnapshotIdentity, read) {
+        this.db.exec("BEGIN;");
+        try {
+            if (this.metadata().projectSnapshotIdentity !== projectSnapshotIdentity)
+                throw new QueryIndexStaleError();
+            const result = read();
+            if (this.metadata().projectSnapshotIdentity !== projectSnapshotIdentity)
+                throw new QueryIndexStaleError();
+            this.db.exec("COMMIT;");
+            return result;
+        }
+        catch (error) {
+            try {
+                this.db.exec("ROLLBACK;");
+            }
+            catch {
+                // Preserve the original read failure.
+            }
+            throw error;
+        }
+    }
+    ftsChunkCandidates(query, limit = QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT) {
+        const normalizedLimit = normalizedCandidateLimit(limit);
+        const rows = this.db
+            .prepare(`
+        SELECT files.path AS path, chunks.ordinal, chunks.kind, chunks.name,
+               chunks.start_line, chunks.end_line, chunks.text, chunks.normalized_text
+        FROM chunk_search
+        JOIN chunks ON chunks.chunk_id = chunk_search.rowid
+        JOIN files ON files.file_id = chunks.file_id
+        WHERE chunk_search MATCH ?
+        ORDER BY files.path, chunks.ordinal
+        LIMIT ?
+      `)
+            .all(query, normalizedLimit);
+        return rows.flatMap((row) => {
+            const chunk = storedCandidateChunkFromRow(row);
+            return chunk ? [chunk] : [];
+        });
+    }
+    substringChunkCandidates(query, paths, limit = QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT) {
+        const normalizedLimit = normalizedCandidateLimit(limit);
+        const candidates = [];
+        const batchSize = 500;
+        for (let offset = 0; offset < paths.length; offset += batchSize) {
+            const batch = paths.slice(offset, offset + batchSize);
+            const placeholders = batch.map(() => "?").join(", ");
+            const remaining = normalizedLimit - candidates.length;
+            if (remaining <= 0)
+                break;
+            const rows = this.db
+                .prepare(`
+          SELECT files.path AS path, chunks.ordinal, chunks.kind, chunks.name,
+                 chunks.start_line, chunks.end_line, chunks.text, chunks.normalized_text
+          FROM chunks
+          JOIN files ON files.file_id = chunks.file_id
+          WHERE files.path IN (${placeholders})
+            AND instr(chunks.normalized_text, ?) > 0
+          ORDER BY files.path, chunks.ordinal
+          LIMIT ?
+        `)
+                .all(...batch, query, remaining);
+            for (const row of rows) {
+                const chunk = storedCandidateChunkFromRow(row);
+                if (chunk)
+                    candidates.push(chunk);
+                if (candidates.length >= normalizedLimit)
+                    break;
+            }
+            if (candidates.length >= normalizedLimit)
+                break;
+        }
+        return candidates;
+    }
+    compactChunkCandidates(query, paths, limit = QUERY_INDEX_CANDIDATE_PREFETCH_LIMIT) {
+        const normalizedLimit = normalizedCandidateLimit(limit);
+        const candidates = [];
+        const batchSize = 500;
+        for (let offset = 0; offset < paths.length; offset += batchSize) {
+            const batch = paths.slice(offset, offset + batchSize);
+            const placeholders = batch.map(() => "?").join(", ");
+            const remaining = normalizedLimit - candidates.length;
+            if (remaining <= 0)
+                break;
+            const rows = this.db
+                .prepare(`
+          SELECT files.path AS path, chunks.ordinal, chunks.kind, chunks.name,
+                 chunks.start_line, chunks.end_line, chunks.text, chunks.normalized_text
+          FROM chunks
+          JOIN files ON files.file_id = chunks.file_id
+          WHERE files.path IN (${placeholders})
+            AND instr(replace(chunks.normalized_text, ' ', ''), ?) > 0
+          ORDER BY files.path, chunks.ordinal
+          LIMIT ?
+        `)
+                .all(...batch, query, remaining);
+            for (const row of rows) {
+                const chunk = storedCandidateChunkFromRow(row);
+                if (chunk)
+                    candidates.push(chunk);
+                if (candidates.length >= normalizedLimit)
+                    break;
+            }
+            if (candidates.length >= normalizedLimit)
+                break;
+        }
+        return candidates;
+    }
+    checkpoint() {
+        this.db.pragma("wal_checkpoint(TRUNCATE)");
+    }
+    close() {
+        if (this.closed)
+            return;
+        this.closed = true;
+        this.db.close();
+    }
+}
+//# sourceMappingURL=store.js.map

package/dist/agent/query-index/store.js.map

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package/dist/agent/query-index/update.d.ts

@@ -0,0 +1,9 @@
+import type { AgentProjectSnapshot } from "../session.js";
+import type { QueryIndexDiagnostics } from "../../indexer/types.js";
+import { QueryIndexStore } from "./store.js";
+export type QueryIndexHandle = {
+    store: QueryIndexStore | null;
+    diagnostics: QueryIndexDiagnostics;
+};
+export declare function ensureQueryIndex(snapshot: AgentProjectSnapshot): Promise<QueryIndexHandle>;
+//# sourceMappingURL=update.d.ts.map

package/dist/agent/query-index/update.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/agent/query-index/update.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,eAAe,CAAC;AAC1D,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAoBpE,OAAO,EAA8C,eAAe,EAAE,MAAM,YAAY,CAAC;AAKzF,MAAM,MAAM,gBAAgB,GAAG;IAC7B,KAAK,EAAE,eAAe,GAAG,IAAI,CAAC;IAC9B,WAAW,EAAE,qBAAqB,CAAC;CACpC,CAAC;AAoNF,wBAAsB,gBAAgB,CAAC,QAAQ,EAAE,oBAAoB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAgHhG"}