@knowledgine/core 0.2.0 → 0.3.0

package/dist/storage/knowledge-repository.d.ts

@@ -9,6 +9,10 @@ export interface KnowledgeNote {
     created_at: string;
     updated_at: string | null;
     content_hash: string | null;
+    valid_from: string | null;
+    deprecated: 0 | 1 | null;
+    extracted_at: string | null;
+    code_location_json: string | null;
 }
 export interface ExtractedPatternRow {
     id: number;
@@ -69,6 +73,11 @@ export declare class KnowledgeRepository {
         totalPairs: number;
         patternsByType: Record<string, number>;
     };
+    /**
+     * コードファイルパスで code_location_json を持つノートを検索する
+     * path パラメータを含む code_location_json が NULL でないノートを返す
+     */
+    searchByCodeLocation(path: string): KnowledgeNote[];
     /**
      * ノートの埋め込みベクトルを保存する（upsert）
      */
@@ -84,7 +93,7 @@ export declare class KnowledgeRepository {
     /**
      * FTS5 rank付きでノートを検索する
      */
-    searchNotesWithRank(query: string, limit?: number): Array<{
+    searchNotesWithRank(query: string, limit?: number, includeDeprecated?: boolean): Array<{
         note: KnowledgeNote;
         rank: number;
     }>;
@@ -96,6 +105,62 @@ export declare class KnowledgeRepository {
      * content_hashが変更されて埋め込みが古くなったノートを取得する
      */
     getNotesWithStaleEmbeddings(): KnowledgeNote[];
+    /**
+     * 指定プレフィックスで始まる file_path を持つノートを取得する
+     */
+    getNotesWithPrefix(prefix: string, limit?: number): KnowledgeNote[];
+    /**
+     * 全ノートを取得する
+     */
+    getAllNotes(): KnowledgeNote[];
+    /**
+     * 特定のソースプラグインで作成されたノートを取得する
+     * frontmatter_json 内の source_plugin フィールドで絞り込む
+     */
+    getNotesBySourcePlugin(pluginId: string): KnowledgeNote[];
+    /**
+     * 指定IDリストのノートを一括削除する
+     */
+    deleteNotesByIds(ids: number[]): number;
+    /**
+     * ノートの extracted_at タイムスタンプを更新する
+     */
+    updateExtractedAt(noteId: number): void;
+    /**
+     * sourceUri プレフィックスでノートを取得する
+     * file_path が sourceUri として使われている（normalizer.ts の仕様）
+     */
+    getNotesBySourceUriPrefix(prefix: string): KnowledgeNote[];
+    /**
+     * 既存リンクチェック後に note_links へ INSERT する（冪等）
+     * 同じ source/target ペアが既に存在する場合は false を返す
+     */
+    saveNoteLinkIfNotExists(sourceNoteId: number, targetNoteId: number, linkType: string, similarity?: number): boolean;
+    /**
+     * 指定ノートに関するリンクをすべて取得する（source または target）
+     */
+    getLinksForNote(noteId: number): Array<{
+        id: number;
+        sourceNoteId: number;
+        targetNoteId: number;
+        linkType: string;
+        similarity: number | null;
+        createdAt: string;
+    }>;
+    /**
+     * サジェスト結果へのフィードバックを保存する
+     */
+    saveSuggestFeedback(noteId: number, query: string, isUseful: boolean, context?: string): number;
+    /**
+     * 特定ノートのサジェストフィードバック一覧を取得する（新しい順）
+     */
+    getSuggestFeedbackForNote(noteId: number): Array<{
+        id: number;
+        query: string;
+        isUseful: boolean;
+        context: string | null;
+        createdAt: string;
+    }>;
     close(): void;
 }
 //# sourceMappingURL=knowledge-repository.d.ts.map

package/dist/storage/knowledge-repository.d.ts.map

@@ -1 +1 @@
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package/dist/storage/knowledge-repository.js

@@ -1,4 +1,4 @@
-import { ValidationError, DatabaseError, KnowledgeNotFoundError, } from "../errors.js";
+import { ValidationError, DatabaseError, KnowledgeNotFoundError } from "../errors.js";
 import { createHash } from "crypto";
 export class KnowledgeRepository {
     db;
@@ -28,6 +28,7 @@ export class KnowledgeRepository {
             const frontmatterJson = data.frontmatter && Object.keys(data.frontmatter).length > 0
                 ? JSON.stringify(data.frontmatter)
                 : null;
+            const codeLocationJson = data.codeLocationJson ?? null;
             if (existing) {
                 // Skip update if content hasn't changed
                 if (existing.content_hash === contentHash) {
@@ -36,20 +37,20 @@ export class KnowledgeRepository {
                 const stmt = this.db.prepare(`
           UPDATE knowledge_notes
           SET title = ?, content = ?, frontmatter_json = ?,
-              updated_at = ?, content_hash = ?
+              updated_at = ?, content_hash = ?, code_location_json = ?
           WHERE id = ?
         `);
-                stmt.run(data.title, data.content, frontmatterJson, now, contentHash, existing.id);
+                stmt.run(data.title, data.content, frontmatterJson, now, contentHash, codeLocationJson, existing.id);
                 return existing.id;
             }
             else {
                 const stmt = this.db.prepare(`
           INSERT INTO knowledge_notes (
             file_path, title, content, frontmatter_json,
-            created_at, updated_at, content_hash
-          ) VALUES (?, ?, ?, ?, ?, ?, ?)
+            created_at, updated_at, content_hash, code_location_json
+          ) VALUES (?, ?, ?, ?, ?, ?, ?, ?)
         `);
-                const info = stmt.run(data.filePath, data.title, data.content, frontmatterJson, data.createdAt || now, now, contentHash);
+                const info = stmt.run(data.filePath, data.title, data.content, frontmatterJson, data.createdAt || now, now, contentHash, codeLocationJson);
                 return Number(info.lastInsertRowid);
             }
         }
@@ -239,6 +240,19 @@ export class KnowledgeRepository {
         }
         return { totalNotes, totalPatterns, totalLinks, totalPairs, patternsByType };
     }
+    /**
+     * コードファイルパスで code_location_json を持つノートを検索する
+     * path パラメータを含む code_location_json が NULL でないノートを返す
+     */
+    searchByCodeLocation(path) {
+        const stmt = this.db.prepare(`
+      SELECT * FROM knowledge_notes
+      WHERE code_location_json IS NOT NULL
+        AND code_location_json LIKE ?
+      ORDER BY created_at DESC
+    `);
+        return stmt.all(`%${path}%`);
+    }
     /**
      * ノートの埋め込みベクトルを保存する（upsert）
      */
@@ -260,9 +274,11 @@ export class KnowledgeRepository {
             // note_embeddings_vec (vec0) が存在する場合は手動で同期
             // vec0 は ON CONFLICT をサポートしないため DELETE + INSERT を使う
             try {
-                this.db.prepare("DELETE FROM note_embeddings_vec WHERE note_id = ?").run(noteId);
                 this.db
-                    .prepare("INSERT INTO note_embeddings_vec(note_id, embedding) VALUES (?, ?)")
+                    .prepare("DELETE FROM note_embeddings_vec WHERE note_id = CAST(? AS INTEGER)")
+                    .run(noteId);
+                this.db
+                    .prepare("INSERT INTO note_embeddings_vec(note_id, embedding) VALUES (CAST(? AS INTEGER), ?)")
                     .run(noteId, embBuf);
             }
             catch {
@@ -299,13 +315,15 @@ export class KnowledgeRepository {
     /**
      * FTS5 rank付きでノートを検索する
      */
-    searchNotesWithRank(query, limit = 50) {
+    searchNotesWithRank(query, limit = 50, includeDeprecated = false) {
+        const deprecatedFilter = includeDeprecated ? "" : "AND n.deprecated = 0";
         try {
             const stmt = this.db.prepare(`
         SELECT n.*, fts.rank
         FROM knowledge_notes n
         JOIN knowledge_notes_fts fts ON n.id = fts.rowid
         WHERE knowledge_notes_fts MATCH ?
+        ${deprecatedFilter}
         ORDER BY rank
         LIMIT ?
       `);
@@ -314,7 +332,8 @@ export class KnowledgeRepository {
         }
         catch {
             // FTS5失敗時はLIKEフォールバック（不正なクエリ構文への耐性）
-            const fallbackStmt = this.db.prepare(`SELECT n.* FROM knowledge_notes n WHERE n.title LIKE ? OR n.content LIKE ? LIMIT ?`);
+            const deprecatedClause = includeDeprecated ? "" : "AND n.deprecated = 0";
+            const fallbackStmt = this.db.prepare(`SELECT n.* FROM knowledge_notes n WHERE (n.title LIKE ? OR n.content LIKE ?) ${deprecatedClause} LIMIT ?`);
             const fallbackRows = fallbackStmt.all(`%${query}%`, `%${query}%`, limit);
             return fallbackRows.map((row) => ({ note: row, rank: 0 }));
         }
@@ -341,6 +360,108 @@ export class KnowledgeRepository {
     `);
         return stmt.all();
     }
+    /**
+     * 指定プレフィックスで始まる file_path を持つノートを取得する
+     */
+    getNotesWithPrefix(prefix, limit = 100) {
+        const stmt = this.db.prepare("SELECT * FROM knowledge_notes WHERE file_path LIKE ? ORDER BY created_at DESC LIMIT ?");
+        return stmt.all(`${prefix}%`, limit);
+    }
+    /**
+     * 全ノートを取得する
+     */
+    getAllNotes() {
+        const stmt = this.db.prepare("SELECT * FROM knowledge_notes");
+        return stmt.all();
+    }
+    /**
+     * 特定のソースプラグインで作成されたノートを取得する
+     * frontmatter_json 内の source_plugin フィールドで絞り込む
+     */
+    getNotesBySourcePlugin(pluginId) {
+        const stmt = this.db.prepare(`SELECT * FROM knowledge_notes WHERE frontmatter_json LIKE ?`);
+        return stmt.all(`%"source_plugin":"${pluginId}"%`);
+    }
+    /**
+     * 指定IDリストのノートを一括削除する
+     */
+    deleteNotesByIds(ids) {
+        if (ids.length === 0)
+            return 0;
+        const placeholders = ids.map(() => "?").join(",");
+        const stmt = this.db.prepare(`DELETE FROM knowledge_notes WHERE id IN (${placeholders})`);
+        const info = stmt.run(...ids);
+        return info.changes;
+    }
+    /**
+     * ノートの extracted_at タイムスタンプを更新する
+     */
+    updateExtractedAt(noteId) {
+        const now = new Date().toISOString();
+        this.db.prepare("UPDATE knowledge_notes SET extracted_at = ? WHERE id = ?").run(now, noteId);
+    }
+    /**
+     * sourceUri プレフィックスでノートを取得する
+     * file_path が sourceUri として使われている（normalizer.ts の仕様）
+     */
+    getNotesBySourceUriPrefix(prefix) {
+        const stmt = this.db.prepare("SELECT * FROM knowledge_notes WHERE file_path LIKE ? ORDER BY created_at ASC");
+        return stmt.all(`${prefix}%`);
+    }
+    /**
+     * 既存リンクチェック後に note_links へ INSERT する（冪等）
+     * 同じ source/target ペアが既に存在する場合は false を返す
+     */
+    saveNoteLinkIfNotExists(sourceNoteId, targetNoteId, linkType, similarity) {
+        const existing = this.db
+            .prepare("SELECT id FROM note_links WHERE source_note_id = ? AND target_note_id = ?")
+            .get(sourceNoteId, targetNoteId);
+        if (existing)
+            return false;
+        const now = new Date().toISOString();
+        this.db
+            .prepare("INSERT INTO note_links (source_note_id, target_note_id, link_type, similarity, created_at) VALUES (?, ?, ?, ?, ?)")
+            .run(sourceNoteId, targetNoteId, linkType, similarity ?? null, now);
+        return true;
+    }
+    /**
+     * 指定ノートに関するリンクをすべて取得する（source または target）
+     */
+    getLinksForNote(noteId) {
+        const stmt = this.db.prepare(`
+      SELECT id, source_note_id as sourceNoteId, target_note_id as targetNoteId,
+             link_type as linkType, similarity, created_at as createdAt
+      FROM note_links
+      WHERE source_note_id = ? OR target_note_id = ?
+      ORDER BY created_at DESC
+    `);
+        return stmt.all(noteId, noteId);
+    }
+    /**
+     * サジェスト結果へのフィードバックを保存する
+     */
+    saveSuggestFeedback(noteId, query, isUseful, context) {
+        const now = new Date().toISOString();
+        const stmt = this.db.prepare(`
+      INSERT INTO suggest_feedback (note_id, query, is_useful, context, created_at)
+      VALUES (?, ?, ?, ?, ?)
+    `);
+        const info = stmt.run(noteId, query, isUseful ? 1 : 0, context ?? null, now);
+        return Number(info.lastInsertRowid);
+    }
+    /**
+     * 特定ノートのサジェストフィードバック一覧を取得する（新しい順）
+     */
+    getSuggestFeedbackForNote(noteId) {
+        const stmt = this.db.prepare(`
+      SELECT id, query, is_useful as isUseful, context, created_at as createdAt
+      FROM suggest_feedback
+      WHERE note_id = ?
+      ORDER BY id DESC
+    `);
+        const rows = stmt.all(noteId);
+        return rows.map((row) => ({ ...row, isUseful: row.isUseful === 1 }));
+    }
     close() {
         this.db.close();
     }

package/dist/storage/knowledge-repository.js.map

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package/dist/storage/migrations/007_spec_alignment.d.ts

@@ -0,0 +1,3 @@
+import type { Migration } from "../migrator.js";
+export declare const migration007: Migration;
+//# sourceMappingURL=007_spec_alignment.d.ts.map

package/dist/storage/migrations/007_spec_alignment.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"007_spec_alignment.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/007_spec_alignment.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AA6GhD,eAAO,MAAM,YAAY,EAAE,SAS1B,CAAC"}

package/dist/storage/migrations/007_spec_alignment.js

@@ -0,0 +1,116 @@
+const SPEC_ALIGNMENT_SQL = `
+-- ① bi-temporal カラム改名 (relations)
+ALTER TABLE relations RENAME COLUMN valid_from TO valid_at;
+ALTER TABLE relations RENAME COLUMN valid_to TO invalid_at;
+ALTER TABLE relations RENAME COLUMN superseded_at TO superseded_by;
+ALTER TABLE relations ADD COLUMN expired_at TEXT;
+ALTER TABLE relations ADD COLUMN source_event_id TEXT;
+
+-- bi-temporal カラム改名 (observations)
+ALTER TABLE observations RENAME COLUMN valid_from TO valid_at;
+ALTER TABLE observations RENAME COLUMN valid_to TO invalid_at;
+ALTER TABLE observations RENAME COLUMN superseded_at TO superseded_by;
+ALTER TABLE observations ADD COLUMN expired_at TEXT;
+ALTER TABLE observations ADD COLUMN source_event_id TEXT;
+
+-- VIEW 再作成
+DROP VIEW IF EXISTS active_relations;
+DROP VIEW IF EXISTS active_observations;
+CREATE VIEW active_relations AS
+  SELECT * FROM relations WHERE (invalid_at IS NULL) AND (expired_at IS NULL);
+CREATE VIEW active_observations AS
+  SELECT * FROM observations WHERE (invalid_at IS NULL) AND (expired_at IS NULL);
+
+-- インデックス再作成
+DROP INDEX IF EXISTS idx_relations_valid_to;
+DROP INDEX IF EXISTS idx_relations_superseded;
+DROP INDEX IF EXISTS idx_observations_valid_to;
+DROP INDEX IF EXISTS idx_observations_superseded;
+CREATE INDEX idx_relations_invalid_at ON relations(invalid_at);
+CREATE INDEX idx_relations_superseded_by ON relations(superseded_by);
+CREATE INDEX idx_observations_invalid_at ON observations(invalid_at);
+CREATE INDEX idx_observations_superseded_by ON observations(superseded_by);
+
+-- ② memory_entries scope
+ALTER TABLE memory_entries ADD COLUMN scope TEXT DEFAULT 'project';
+
+-- ③ provenance_links (新規)
+CREATE TABLE provenance_links (
+  id TEXT PRIMARY KEY,
+  from_entity_uri TEXT NOT NULL,
+  to_entity_uri TEXT NOT NULL,
+  relation TEXT NOT NULL,
+  created_at TEXT NOT NULL
+);
+
+-- ④ provenance テーブル再構築
+CREATE TABLE provenance_new (
+  id TEXT PRIMARY KEY,
+  entity_uri TEXT NOT NULL,
+  activity_type TEXT NOT NULL,
+  agent TEXT,
+  source_uri TEXT,
+  generated_at TEXT NOT NULL,
+  metadata TEXT
+);
+INSERT INTO provenance_new (id, entity_uri, activity_type, agent, source_uri, generated_at, metadata)
+  SELECT CAST(id AS TEXT), entity_uri, activity_type, agent,
+         COALESCE(input_uris, ''), started_at, metadata_json
+  FROM provenance;
+DROP TABLE provenance;
+ALTER TABLE provenance_new RENAME TO provenance;
+CREATE INDEX idx_provenance_entity ON provenance(entity_uri);
+CREATE INDEX idx_provenance_activity ON provenance(activity_type);
+
+-- ⑤ file_timeline 再構築
+CREATE TABLE file_timeline_new (
+  file_path TEXT NOT NULL,
+  event_id TEXT NOT NULL,
+  changed_at TEXT NOT NULL,
+  change_type TEXT NOT NULL
+);
+INSERT INTO file_timeline_new (file_path, event_id, changed_at, change_type)
+  SELECT file_path, CAST(COALESCE(event_id, '') AS TEXT), occurred_at, event_type
+  FROM file_timeline;
+DROP TABLE file_timeline;
+ALTER TABLE file_timeline_new RENAME TO file_timeline;
+CREATE INDEX idx_file_timeline_path ON file_timeline(file_path);
+CREATE INDEX idx_file_timeline_changed ON file_timeline(changed_at);
+
+-- ⑥ snapshots 再構築
+CREATE TABLE snapshots_new (
+  id TEXT PRIMARY KEY,
+  snapshot_at TEXT NOT NULL,
+  entity_count INTEGER,
+  event_count INTEGER,
+  metadata TEXT
+);
+INSERT INTO snapshots_new (id, snapshot_at, entity_count, event_count, metadata)
+  SELECT CAST(id AS TEXT), snapshot_at, entity_count, event_count, metadata_json
+  FROM snapshots;
+DROP TABLE snapshots;
+ALTER TABLE snapshots_new RENAME TO snapshots;
+`;
+const SPEC_ALIGNMENT_DOWN_SQL = `
+-- provenance_links 削除
+DROP TABLE IF EXISTS provenance_links;
+
+-- VIEWの再作成（元の条件）
+DROP VIEW IF EXISTS active_relations;
+DROP VIEW IF EXISTS active_observations;
+CREATE VIEW active_relations AS
+  SELECT * FROM relations WHERE invalid_at IS NULL AND superseded_by IS NULL;
+CREATE VIEW active_observations AS
+  SELECT * FROM observations WHERE invalid_at IS NULL AND superseded_by IS NULL;
+`;
+export const migration007 = {
+    version: 9,
+    name: "spec_alignment",
+    up: (db) => {
+        db.exec(SPEC_ALIGNMENT_SQL);
+    },
+    down: (db) => {
+        db.exec(SPEC_ALIGNMENT_DOWN_SQL);
+    },
+};
+//# sourceMappingURL=007_spec_alignment.js.map

package/dist/storage/migrations/007_spec_alignment.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"007_spec_alignment.js","sourceRoot":"","sources":["../../../src/storage/migrations/007_spec_alignment.ts"],"names":[],"mappings":"AAEA,MAAM,kBAAkB,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4F1B,CAAC;AAEF,MAAM,uBAAuB,GAAG;;;;;;;;;;;CAW/B,CAAC;AAEF,MAAM,CAAC,MAAM,YAAY,GAAc;IACrC,OAAO,EAAE,CAAC;IACV,IAAI,EAAE,gBAAgB;IACtB,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE;QACT,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;IAC9B,CAAC;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE;QACX,EAAE,CAAC,IAAI,CAAC,uBAAuB,CAAC,CAAC;IACnC,CAAC;CACF,CAAC"}

package/dist/storage/migrations/008_knowledge_versioning.d.ts

@@ -0,0 +1,15 @@
+import type { Migration } from "../migrator.js";
+/**
+ * Migration 008: Knowledge Versioning
+ *
+ * Adds versioning and deprecation support to knowledge tables:
+ * - knowledge_notes: version tracking, supersedes (FK), valid_from, deprecated flag
+ * - extracted_patterns: deprecated flag
+ * - problem_solution_pairs: version tracking, supersedes, deprecated flag
+ *
+ * Naming note:
+ * - knowledge_notes uses `valid_from` (start point) vs graph's `valid_at` (point in time)
+ * - knowledge_notes uses `supersedes` (INTEGER FK) vs graph's `superseded_by` (TEXT, legacy)
+ */
+export declare const migration008: Migration;
+//# sourceMappingURL=008_knowledge_versioning.d.ts.map

package/dist/storage/migrations/008_knowledge_versioning.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"008_knowledge_versioning.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/008_knowledge_versioning.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAEhD;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,YAAY,EAAE,SA8D1B,CAAC"}

package/dist/storage/migrations/008_knowledge_versioning.js

@@ -0,0 +1,69 @@
+/**
+ * Migration 008: Knowledge Versioning
+ *
+ * Adds versioning and deprecation support to knowledge tables:
+ * - knowledge_notes: version tracking, supersedes (FK), valid_from, deprecated flag
+ * - extracted_patterns: deprecated flag
+ * - problem_solution_pairs: version tracking, supersedes, deprecated flag
+ *
+ * Naming note:
+ * - knowledge_notes uses `valid_from` (start point) vs graph's `valid_at` (point in time)
+ * - knowledge_notes uses `supersedes` (INTEGER FK) vs graph's `superseded_by` (TEXT, legacy)
+ */
+export const migration008 = {
+    version: 10,
+    name: "knowledge_versioning",
+    up: (db) => {
+        // ① knowledge_notes: versioning and deprecation columns
+        db.exec(`
+      ALTER TABLE knowledge_notes ADD COLUMN version INTEGER DEFAULT 1;
+      ALTER TABLE knowledge_notes ADD COLUMN supersedes INTEGER REFERENCES knowledge_notes(id) ON DELETE SET NULL;
+      ALTER TABLE knowledge_notes ADD COLUMN valid_from TEXT;
+      ALTER TABLE knowledge_notes ADD COLUMN deprecated INTEGER DEFAULT 0 CHECK(deprecated IN (0, 1));
+      ALTER TABLE knowledge_notes ADD COLUMN deprecation_reason TEXT;
+    `);
+        // ② extracted_patterns: deprecation columns
+        db.exec(`
+      ALTER TABLE extracted_patterns ADD COLUMN deprecated INTEGER DEFAULT 0 CHECK(deprecated IN (0, 1));
+      ALTER TABLE extracted_patterns ADD COLUMN deprecation_reason TEXT;
+    `);
+        // ③ problem_solution_pairs: versioning and deprecation columns
+        // NOTE: supersedes is TEXT here — PSPs benefit from free-form references (not self-FK)
+        db.exec(`
+      ALTER TABLE problem_solution_pairs ADD COLUMN version INTEGER DEFAULT 1;
+      ALTER TABLE problem_solution_pairs ADD COLUMN supersedes TEXT;
+      ALTER TABLE problem_solution_pairs ADD COLUMN deprecated INTEGER DEFAULT 0 CHECK(deprecated IN (0, 1));
+      ALTER TABLE problem_solution_pairs ADD COLUMN deprecation_reason TEXT;
+    `);
+        // ④ Backfill valid_from with created_at for existing data (same pattern as 005b_bitemporal)
+        db.exec(`
+      UPDATE knowledge_notes SET valid_from = created_at WHERE valid_from IS NULL;
+    `);
+        // ⑤ Indexes for common query patterns
+        db.exec(`
+      CREATE INDEX idx_knowledge_notes_deprecated ON knowledge_notes(deprecated);
+      CREATE INDEX idx_knowledge_notes_valid_from ON knowledge_notes(valid_from);
+      CREATE INDEX idx_ps_pairs_deprecated ON problem_solution_pairs(deprecated);
+    `);
+        // ⑥ Views (same pattern as active_relations / active_observations)
+        db.exec(`
+      CREATE VIEW active_knowledge_notes AS
+        SELECT * FROM knowledge_notes WHERE deprecated = 0;
+
+      CREATE VIEW active_problem_solution_pairs AS
+        SELECT * FROM problem_solution_pairs WHERE deprecated = 0;
+    `);
+    },
+    down: (db) => {
+        // Drop views and indexes only. Columns are kept (same pattern as 005a_events_layer)
+        // to avoid FTS5 trigger and FK constraint complications with table recreation.
+        db.exec(`
+      DROP VIEW IF EXISTS active_knowledge_notes;
+      DROP VIEW IF EXISTS active_problem_solution_pairs;
+      DROP INDEX IF EXISTS idx_knowledge_notes_deprecated;
+      DROP INDEX IF EXISTS idx_knowledge_notes_valid_from;
+      DROP INDEX IF EXISTS idx_ps_pairs_deprecated;
+    `);
+    },
+};
+//# sourceMappingURL=008_knowledge_versioning.js.map

package/dist/storage/migrations/008_knowledge_versioning.js.map

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package/dist/storage/migrations/009_extraction_metadata.d.ts

@@ -0,0 +1,12 @@
+import type { Migration } from "../migrator.js";
+/**
+ * Migration 009: Extraction Metadata
+ *
+ * Adds extraction metadata columns to knowledge_notes:
+ * - code_location_json: JSON blob for code location info (file, line, etc.)
+ * - extracted_at: timestamp when the note was extracted
+ *
+ * Also adds suggest_feedback table for recording user feedback on suggestions.
+ */
+export declare const migration009: Migration;
+//# sourceMappingURL=009_extraction_metadata.d.ts.map

package/dist/storage/migrations/009_extraction_metadata.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"009_extraction_metadata.d.ts","sourceRoot":"","sources":["../../../src/storage/migrations/009_extraction_metadata.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAEhD;;;;;;;;GAQG;AACH,eAAO,MAAM,YAAY,EAAE,SA+B1B,CAAC"}

package/dist/storage/migrations/009_extraction_metadata.js

@@ -0,0 +1,39 @@
+/**
+ * Migration 009: Extraction Metadata
+ *
+ * Adds extraction metadata columns to knowledge_notes:
+ * - code_location_json: JSON blob for code location info (file, line, etc.)
+ * - extracted_at: timestamp when the note was extracted
+ *
+ * Also adds suggest_feedback table for recording user feedback on suggestions.
+ */
+export const migration009 = {
+    version: 11,
+    name: "extraction_metadata",
+    up: (db) => {
+        // ① knowledge_notes: extraction metadata columns
+        db.exec(`
+      ALTER TABLE knowledge_notes ADD COLUMN code_location_json TEXT;
+      ALTER TABLE knowledge_notes ADD COLUMN extracted_at TEXT;
+    `);
+        // ② suggest_feedback: user feedback on suggestions
+        db.exec(`
+      CREATE TABLE IF NOT EXISTS suggest_feedback (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        note_id INTEGER NOT NULL,
+        query TEXT NOT NULL,
+        is_useful INTEGER NOT NULL,
+        context TEXT,
+        created_at TEXT NOT NULL DEFAULT (datetime('now')),
+        FOREIGN KEY (note_id) REFERENCES knowledge_notes(id)
+      );
+    `);
+    },
+    down: (db) => {
+        // Drop suggest_feedback table
+        db.exec(`DROP TABLE IF EXISTS suggest_feedback;`);
+        // Columns cannot be dropped in SQLite without recreating the table.
+        // Same pattern as other migrations: keep columns to avoid FK/FTS complications.
+    },
+};
+//# sourceMappingURL=009_extraction_metadata.js.map