@knowledgine/core 0.0.1 → 0.2.0

package/dist/graph/graph-repository.js

@@ -0,0 +1,442 @@
+import { DatabaseError, ValidationError } from "../errors.js";
+function rowToEntity(row) {
+    return {
+        id: row.id,
+        name: row.name,
+        entityType: row.entity_type,
+        description: row.description ?? undefined,
+        createdAt: row.created_at,
+        updatedAt: row.updated_at ?? undefined,
+        metadata: row.metadata_json
+            ? JSON.parse(row.metadata_json)
+            : undefined,
+    };
+}
+function rowToRelation(row) {
+    return {
+        id: row.id,
+        fromEntityId: row.from_entity_id,
+        toEntityId: row.to_entity_id,
+        relationType: row.relation_type,
+        strength: row.strength,
+        description: row.description ?? undefined,
+        createdAt: row.created_at,
+    };
+}
+function rowToObservation(row) {
+    return {
+        id: row.id,
+        entityId: row.entity_id,
+        content: row.content,
+        observationType: row.observation_type,
+        confidence: row.confidence ?? undefined,
+        sourceNoteId: row.source_note_id ?? undefined,
+        sourcePatternId: row.source_pattern_id ?? undefined,
+        createdAt: row.created_at,
+        metadata: row.metadata_json
+            ? JSON.parse(row.metadata_json)
+            : undefined,
+    };
+}
+export class GraphRepository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    // ── Entity CRUD ──────────────────────────────────────────────
+    createEntity(entity) {
+        if (!entity.name || entity.name.trim() === "") {
+            throw new ValidationError("name", entity.name, "Entity name is required");
+        }
+        try {
+            const now = new Date().toISOString();
+            const stmt = this.db.prepare(`
+        INSERT INTO entities (name, entity_type, description, created_at, updated_at, metadata_json)
+        VALUES (?, ?, ?, ?, ?, ?)
+      `);
+            const info = stmt.run(entity.name.toLowerCase(), entity.entityType, entity.description ?? null, entity.createdAt || now, entity.updatedAt ?? null, entity.metadata ? JSON.stringify(entity.metadata) : null);
+            return Number(info.lastInsertRowid);
+        }
+        catch (error) {
+            if (error instanceof ValidationError)
+                throw error;
+            throw new DatabaseError("createEntity", error, { name: entity.name });
+        }
+    }
+    /**
+     * 名前を小文字正規化してupsert。同名・同タイプのエンティティは更新する。
+     */
+    upsertEntity(entity) {
+        if (!entity.name || entity.name.trim() === "") {
+            throw new ValidationError("name", entity.name, "Entity name is required");
+        }
+        try {
+            const normalizedName = entity.name.toLowerCase();
+            const now = new Date().toISOString();
+            const stmt = this.db.prepare(`
+        INSERT INTO entities (name, entity_type, description, created_at, updated_at, metadata_json)
+        VALUES (?, ?, ?, ?, ?, ?)
+        ON CONFLICT(name, entity_type) DO UPDATE SET
+          description = COALESCE(excluded.description, description),
+          updated_at = excluded.updated_at,
+          metadata_json = COALESCE(excluded.metadata_json, metadata_json)
+      `);
+            stmt.run(normalizedName, entity.entityType, entity.description ?? null, entity.createdAt || now, now, entity.metadata ? JSON.stringify(entity.metadata) : null);
+            const existing = this.getEntityByName(normalizedName, entity.entityType);
+            return existing.id;
+        }
+        catch (error) {
+            if (error instanceof ValidationError)
+                throw error;
+            throw new DatabaseError("upsertEntity", error, { name: entity.name });
+        }
+    }
+    getEntityById(id) {
+        const row = this.db.prepare("SELECT * FROM entities WHERE id = ?").get(id);
+        return row ? rowToEntity(row) : undefined;
+    }
+    getEntityByName(name, entityType) {
+        const normalizedName = name.toLowerCase();
+        if (entityType) {
+            const row = this.db
+                .prepare("SELECT * FROM entities WHERE name = ? AND entity_type = ?")
+                .get(normalizedName, entityType);
+            return row ? rowToEntity(row) : undefined;
+        }
+        const row = this.db
+            .prepare("SELECT * FROM entities WHERE name = ? LIMIT 1")
+            .get(normalizedName);
+        return row ? rowToEntity(row) : undefined;
+    }
+    /**
+     * FTS5 trigram検索。3文字未満はLIKEフォールバック。
+     */
+    searchEntities(query, limit = 20) {
+        if (query.length < 3) {
+            // LIKE fallback for short queries
+            const rows = this.db
+                .prepare(`SELECT * FROM entities WHERE name LIKE ? OR description LIKE ? LIMIT ?`)
+                .all(`%${query}%`, `%${query}%`, limit);
+            return rows.map(rowToEntity);
+        }
+        try {
+            const rows = this.db
+                .prepare(`
+          SELECT e.* FROM entities e
+          JOIN entities_fts fts ON e.id = fts.rowid
+          WHERE entities_fts MATCH ?
+          ORDER BY rank
+          LIMIT ?
+        `)
+                .all(query, limit);
+            return rows.map(rowToEntity);
+        }
+        catch {
+            // FTS失敗時はLIKEフォールバック
+            const rows = this.db
+                .prepare(`SELECT * FROM entities WHERE name LIKE ? OR description LIKE ? LIMIT ?`)
+                .all(`%${query}%`, `%${query}%`, limit);
+            return rows.map(rowToEntity);
+        }
+    }
+    deleteEntity(id) {
+        try {
+            const info = this.db.prepare("DELETE FROM entities WHERE id = ?").run(id);
+            return info.changes > 0;
+        }
+        catch (error) {
+            throw new DatabaseError("deleteEntity", error, { id });
+        }
+    }
+    // ── Relation CRUD ─────────────────────────────────────────────
+    createRelation(relation) {
+        try {
+            const now = new Date().toISOString();
+            const stmt = this.db.prepare(`
+        INSERT INTO relations (from_entity_id, to_entity_id, relation_type, strength, description, created_at, valid_from, recorded_at)
+        VALUES (?, ?, ?, ?, ?, ?, datetime('now'), datetime('now'))
+      `);
+            const info = stmt.run(relation.fromEntityId, relation.toEntityId, relation.relationType, relation.strength ?? 1.0, relation.description ?? null, relation.createdAt || now);
+            return Number(info.lastInsertRowid);
+        }
+        catch (error) {
+            throw new DatabaseError("createRelation", error, {
+                fromEntityId: relation.fromEntityId,
+                toEntityId: relation.toEntityId,
+            });
+        }
+    }
+    /**
+     * 同一 (from, to, type) のrelationが存在する場合はstrengthをMAXで更新。
+     */
+    upsertRelation(relation) {
+        try {
+            const now = new Date().toISOString();
+            const strength = relation.strength ?? 1.0;
+            const insertStmt = this.db.prepare(`
+        INSERT OR IGNORE INTO relations
+          (from_entity_id, to_entity_id, relation_type, strength, description, created_at, valid_from, recorded_at)
+        VALUES (?, ?, ?, ?, ?, ?, datetime('now'), datetime('now'))
+      `);
+            insertStmt.run(relation.fromEntityId, relation.toEntityId, relation.relationType, strength, relation.description ?? null, relation.createdAt || now);
+            const updateStmt = this.db.prepare(`
+        UPDATE relations
+        SET strength = MAX(strength, ?)
+        WHERE from_entity_id = ? AND to_entity_id = ? AND relation_type = ?
+      `);
+            updateStmt.run(strength, relation.fromEntityId, relation.toEntityId, relation.relationType);
+            const existing = this.db
+                .prepare("SELECT id FROM relations WHERE from_entity_id = ? AND to_entity_id = ? AND relation_type = ?")
+                .get(relation.fromEntityId, relation.toEntityId, relation.relationType);
+            return existing?.id ?? 0;
+        }
+        catch (error) {
+            throw new DatabaseError("upsertRelation", error, {
+                fromEntityId: relation.fromEntityId,
+                toEntityId: relation.toEntityId,
+            });
+        }
+    }
+    getRelationsByEntityId(entityId) {
+        const rows = this.db
+            .prepare("SELECT * FROM active_relations WHERE from_entity_id = ? OR to_entity_id = ? ORDER BY strength DESC")
+            .all(entityId, entityId);
+        return rows.map(rowToRelation);
+    }
+    deleteRelation(id) {
+        try {
+            const info = this.db.prepare("DELETE FROM relations WHERE id = ?").run(id);
+            return info.changes > 0;
+        }
+        catch (error) {
+            throw new DatabaseError("deleteRelation", error, { id });
+        }
+    }
+    // ── Observation CRUD ──────────────────────────────────────────
+    createObservation(observation) {
+        try {
+            const now = new Date().toISOString();
+            const stmt = this.db.prepare(`
+        INSERT INTO observations
+          (entity_id, content, observation_type, confidence, source_note_id, source_pattern_id, created_at, metadata_json, valid_from, recorded_at)
+        VALUES (?, ?, ?, ?, ?, ?, ?, ?, datetime('now'), datetime('now'))
+      `);
+            const info = stmt.run(observation.entityId, observation.content, observation.observationType, observation.confidence ?? null, observation.sourceNoteId ?? null, observation.sourcePatternId ?? null, observation.createdAt || now, observation.metadata ? JSON.stringify(observation.metadata) : null);
+            return Number(info.lastInsertRowid);
+        }
+        catch (error) {
+            throw new DatabaseError("createObservation", error, { entityId: observation.entityId });
+        }
+    }
+    getObservationsByEntityId(entityId) {
+        const rows = this.db
+            .prepare("SELECT * FROM active_observations WHERE entity_id = ? ORDER BY created_at DESC")
+            .all(entityId);
+        return rows.map(rowToObservation);
+    }
+    deleteObservation(id) {
+        try {
+            const info = this.db.prepare("DELETE FROM observations WHERE id = ?").run(id);
+            return info.changes > 0;
+        }
+        catch (error) {
+            throw new DatabaseError("deleteObservation", error, { id });
+        }
+    }
+    // ── Entity-Note Links ─────────────────────────────────────────
+    linkEntityToNote(entityId, noteId) {
+        try {
+            this.db
+                .prepare("INSERT OR IGNORE INTO entity_note_links (entity_id, note_id) VALUES (?, ?)")
+                .run(entityId, noteId);
+        }
+        catch (error) {
+            throw new DatabaseError("linkEntityToNote", error, { entityId, noteId });
+        }
+    }
+    getLinkedNotes(entityId) {
+        const rows = this.db
+            .prepare("SELECT entity_id, note_id FROM entity_note_links WHERE entity_id = ?")
+            .all(entityId);
+        return rows.map((r) => ({ entityId: r.entity_id, noteId: r.note_id }));
+    }
+    getLinkedEntities(noteId) {
+        const rows = this.db
+            .prepare(`
+        SELECT e.* FROM entities e
+        JOIN entity_note_links l ON e.id = l.entity_id
+        WHERE l.note_id = ?
+      `)
+            .all(noteId);
+        return rows.map(rowToEntity);
+    }
+    // ── Graph Traversal ───────────────────────────────────────────
+    getEntityWithGraph(entityId) {
+        const entity = this.getEntityById(entityId);
+        if (!entity)
+            return undefined;
+        const observations = this.getObservationsByEntityId(entityId);
+        const outgoingRows = this.db
+            .prepare(`
+        SELECT r.*, e.id as te_id, e.name as te_name, e.entity_type as te_type,
+               e.description as te_desc, e.created_at as te_created, e.updated_at as te_updated, e.metadata_json as te_meta
+        FROM active_relations r
+        JOIN entities e ON e.id = r.to_entity_id
+        WHERE r.from_entity_id = ?
+        ORDER BY r.strength DESC
+      `)
+            .all(entityId);
+        const outgoingRelations = outgoingRows.map((row) => ({
+            ...rowToRelation(row),
+            targetEntity: rowToEntity({
+                id: row.te_id,
+                name: row.te_name,
+                entity_type: row.te_type,
+                description: row.te_desc,
+                created_at: row.te_created,
+                updated_at: row.te_updated,
+                metadata_json: row.te_meta,
+            }),
+        }));
+        const incomingRows = this.db
+            .prepare(`
+        SELECT r.*, e.id as se_id, e.name as se_name, e.entity_type as se_type,
+               e.description as se_desc, e.created_at as se_created, e.updated_at as se_updated, e.metadata_json as se_meta
+        FROM active_relations r
+        JOIN entities e ON e.id = r.from_entity_id
+        WHERE r.to_entity_id = ?
+        ORDER BY r.strength DESC
+      `)
+            .all(entityId);
+        const incomingRelations = incomingRows.map((row) => ({
+            ...rowToRelation(row),
+            sourceEntity: rowToEntity({
+                id: row.se_id,
+                name: row.se_name,
+                entity_type: row.se_type,
+                description: row.se_desc,
+                created_at: row.se_created,
+                updated_at: row.se_updated,
+                metadata_json: row.se_meta,
+            }),
+        }));
+        const linkedNoteRows = this.db
+            .prepare(`
+        SELECT l.entity_id, l.note_id, n.file_path, n.title, n.created_at
+        FROM entity_note_links l
+        JOIN knowledge_notes n ON n.id = l.note_id
+        WHERE l.entity_id = ?
+      `)
+            .all(entityId);
+        const linkedNotes = linkedNoteRows.map((row) => ({
+            entityId: row.entity_id,
+            noteId: row.note_id,
+            note: {
+                filePath: row.file_path,
+                title: row.title,
+                createdAt: row.created_at,
+            },
+        }));
+        return {
+            ...entity,
+            observations,
+            outgoingRelations,
+            incomingRelations,
+            linkedNotes,
+        };
+    }
+    /**
+     * 幅優先探索でhops内の関連エンティティを取得。
+     * 循環グラフ対策: visitedセットで重複訪問を防ぐ。maxHops上限は3。
+     */
+    findRelatedEntities(entityId, maxHops = 1) {
+        const safeMaxHops = Math.min(maxHops, 3);
+        const visited = new Set([entityId]);
+        const result = [];
+        let frontier = [entityId];
+        for (let hop = 1; hop <= safeMaxHops; hop++) {
+            if (frontier.length === 0)
+                break;
+            const placeholders = frontier.map(() => "?").join(",");
+            const nextIds = [];
+            const rows = this.db
+                .prepare(`
+          SELECT DISTINCT
+            CASE WHEN r.from_entity_id IN (${placeholders}) THEN r.to_entity_id
+                 ELSE r.from_entity_id END as neighbor_id
+          FROM active_relations r
+          WHERE r.from_entity_id IN (${placeholders}) OR r.to_entity_id IN (${placeholders})
+        `)
+                .all(...frontier, ...frontier, ...frontier);
+            for (const { neighbor_id } of rows) {
+                if (visited.has(neighbor_id))
+                    continue;
+                visited.add(neighbor_id);
+                nextIds.push(neighbor_id);
+                const entity = this.getEntityById(neighbor_id);
+                if (entity) {
+                    result.push({ ...entity, hops: hop });
+                }
+            }
+            frontier = nextIds;
+        }
+        return result;
+    }
+    // ── Stats ─────────────────────────────────────────────────────
+    getGraphStats() {
+        const totalEntities = this.db.prepare("SELECT COUNT(*) as count FROM entities").get().count;
+        const totalRelations = this.db.prepare("SELECT COUNT(*) as count FROM active_relations").get().count;
+        const totalObservations = this.db.prepare("SELECT COUNT(*) as count FROM active_observations").get().count;
+        const entityTypeRows = this.db
+            .prepare("SELECT entity_type, COUNT(*) as count FROM entities GROUP BY entity_type")
+            .all();
+        const entitiesByType = {};
+        for (const row of entityTypeRows) {
+            entitiesByType[row.entity_type] = row.count;
+        }
+        const relationTypeRows = this.db
+            .prepare("SELECT relation_type, COUNT(*) as count FROM active_relations GROUP BY relation_type")
+            .all();
+        const relationsByType = {};
+        for (const row of relationTypeRows) {
+            relationsByType[row.relation_type] = row.count;
+        }
+        return { totalEntities, totalRelations, totalObservations, entitiesByType, relationsByType };
+    }
+    // ── Bi-temporal Operations ────────────────────────────────────
+    invalidateRelation(id, validTo) {
+        try {
+            const info = this.db
+                .prepare(`UPDATE relations SET valid_to = COALESCE(?, datetime('now')) WHERE id = ? AND valid_to IS NULL`)
+                .run(validTo ?? null, id);
+            return info.changes > 0;
+        }
+        catch (error) {
+            throw new DatabaseError("invalidateRelation", error, { id });
+        }
+    }
+    invalidateObservation(id, validTo) {
+        try {
+            const info = this.db
+                .prepare(`UPDATE observations SET valid_to = COALESCE(?, datetime('now')) WHERE id = ? AND valid_to IS NULL`)
+                .run(validTo ?? null, id);
+            return info.changes > 0;
+        }
+        catch (error) {
+            throw new DatabaseError("invalidateObservation", error, { id });
+        }
+    }
+    getRelationHistory(fromEntityId, toEntityId) {
+        const rows = this.db
+            .prepare(`SELECT * FROM relations WHERE from_entity_id = ? AND to_entity_id = ? ORDER BY recorded_at DESC`)
+            .all(fromEntityId, toEntityId);
+        return rows.map((row) => ({
+            ...rowToRelation(row),
+            validFrom: row.valid_from,
+            validTo: row.valid_to,
+            recordedAt: row.recorded_at,
+            supersededAt: row.superseded_at,
+        }));
+    }
+}
+//# sourceMappingURL=graph-repository.js.map

package/dist/graph/graph-repository.js.map

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package/dist/graph/index.d.ts

@@ -0,0 +1,4 @@
+export { GraphRepository } from "./graph-repository.js";
+export { EntityExtractor } from "./entity-extractor.js";
+export { RelationInferrer } from "./relation-inferrer.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/graph/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/graph/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC"}

package/dist/graph/index.js

@@ -0,0 +1,4 @@
+export { GraphRepository } from "./graph-repository.js";
+export { EntityExtractor } from "./entity-extractor.js";
+export { RelationInferrer } from "./relation-inferrer.js";
+//# sourceMappingURL=index.js.map

package/dist/graph/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/graph/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC"}

package/dist/graph/relation-inferrer.d.ts

@@ -0,0 +1,23 @@
+import type { RelationType, EntityType } from "../types.js";
+export interface InferredRelation {
+    fromName: string;
+    fromType: EntityType;
+    toName: string;
+    toType: EntityType;
+    relationType: RelationType;
+    strength: number;
+}
+export declare class RelationInferrer {
+    /**
+     * 同一ノート内のエンティティ群から関係を推論する。
+     *
+     * @param entities - ノートから抽出されたエンティティ（name + entityType）
+     * @param frontmatter - フロントマターデータ
+     */
+    infer(entities: Array<{
+        name: string;
+        entityType: EntityType;
+    }>, frontmatter?: Record<string, unknown>): InferredRelation[];
+    private deduplicate;
+}
+//# sourceMappingURL=relation-inferrer.d.ts.map

package/dist/graph/relation-inferrer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"relation-inferrer.d.ts","sourceRoot":"","sources":["../../src/graph/relation-inferrer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAE5D,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,UAAU,CAAC;IACrB,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,UAAU,CAAC;IACnB,YAAY,EAAE,YAAY,CAAC;IAC3B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,qBAAa,gBAAgB;IAC3B;;;;;OAKG;IACH,KAAK,CACH,QAAQ,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,UAAU,CAAA;KAAE,CAAC,EACzD,WAAW,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,GACxC,gBAAgB,EAAE;IAgFrB,OAAO,CAAC,WAAW;CAWpB"}

package/dist/graph/relation-inferrer.js

@@ -0,0 +1,89 @@
+export class RelationInferrer {
+    /**
+     * 同一ノート内のエンティティ群から関係を推論する。
+     *
+     * @param entities - ノートから抽出されたエンティティ（name + entityType）
+     * @param frontmatter - フロントマターデータ
+     */
+    infer(entities, frontmatter = {}) {
+        const results = [];
+        const persons = entities.filter((e) => e.entityType === "person");
+        const projects = entities.filter((e) => e.entityType === "project");
+        const technologies = entities.filter((e) => e.entityType === "technology" || e.entityType === "tool");
+        // author → project: created_by
+        const author = frontmatter["author"];
+        const projectName = frontmatter["project"];
+        if (typeof author === "string" &&
+            author.trim() &&
+            typeof projectName === "string" &&
+            projectName.trim()) {
+            results.push({
+                fromName: author.trim().toLowerCase(),
+                fromType: "person",
+                toName: projectName.trim().toLowerCase(),
+                toType: "project",
+                relationType: "created_by",
+                strength: 0.9,
+            });
+        }
+        // person → project: works_on (from frontmatter project field)
+        if (typeof projectName === "string" && projectName.trim()) {
+            for (const person of persons) {
+                if (person.name !== author?.toString().toLowerCase()) {
+                    results.push({
+                        fromName: person.name,
+                        fromType: "person",
+                        toName: projectName.trim().toLowerCase(),
+                        toType: "project",
+                        relationType: "works_on",
+                        strength: 0.7,
+                    });
+                }
+            }
+        }
+        // import → depends_on: technology depends on other technology
+        // (This is simplified: if note has multiple imports, they co-occur in same context)
+        // technology → project: uses (project uses technology when co-occurring)
+        for (const project of projects) {
+            for (const tech of technologies) {
+                results.push({
+                    fromName: project.name,
+                    fromType: "project",
+                    toName: tech.name,
+                    toType: tech.entityType,
+                    relationType: "uses",
+                    strength: 0.5,
+                });
+            }
+        }
+        // technology depends_on: inferred from import patterns (same note)
+        // Only if there are multiple technologies
+        if (technologies.length >= 2) {
+            for (let i = 0; i < technologies.length; i++) {
+                for (let j = i + 1; j < technologies.length; j++) {
+                    results.push({
+                        fromName: technologies[i].name,
+                        fromType: technologies[i].entityType,
+                        toName: technologies[j].name,
+                        toType: technologies[j].entityType,
+                        relationType: "related_to",
+                        strength: 0.3,
+                    });
+                }
+            }
+        }
+        return this.deduplicate(results);
+    }
+    deduplicate(relations) {
+        const seen = new Map();
+        for (const r of relations) {
+            const key = `${r.fromName}:${r.fromType}→${r.toName}:${r.toType}:${r.relationType}`;
+            const existing = seen.get(key);
+            if (!existing || r.strength > existing.strength) {
+                seen.set(key, r);
+            }
+        }
+        return Array.from(seen.values());
+    }
+}
+//# sourceMappingURL=relation-inferrer.js.map

package/dist/graph/relation-inferrer.js.map

@@ -0,0 +1 @@
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