@jcode.labs/ragmir 2.7.0 → 2.8.0

package/dist/types.d.ts

@@ -2,6 +2,9 @@ import type { PathLike } from "node:fs";
 import type { PackageManager } from "./package-manager.js";
 export interface Config {
     projectRoot: string;
+    privacyProfile: PrivacyProfile;
+    retrievalProfile: RetrievalProfile;
+    acceptedRisks: string[];
     rawDir: string;
     storageDir: string;
     sourcesFile: string;
@@ -11,6 +14,7 @@ export interface Config {
     tableName: string;
     embeddingProvider: EmbeddingProvider;
     embeddingModel: string;
+    embeddingModelRevision: string;
     transformersAllowRemoteModels: boolean;
     redaction: RedactionConfig;
     accessLog: boolean;
@@ -30,6 +34,8 @@ export interface Config {
     legacyWordCommand: string[];
     legacyWordTimeoutMs: number;
 }
+export type PrivacyProfile = "strict" | "private" | "trusted" | "custom";
+export type RetrievalProfile = "fast" | "balanced" | "quality" | "custom";
 export type AccessLogAction = "ingest" | "search" | "ask" | "research" | "evaluate" | "destroy-index";
 export interface AccessLogUsageOptions {
     cwd?: PathLike;
@@ -44,8 +50,21 @@ export interface AccessLogUsageReport {
     eventsByAction: Record<AccessLogAction, number>;
     uniqueQueryHashes: number;
     averageResultCount: number | null;
+    averageResultCountByAction: Record<AccessLogAction, number | null>;
     lastEventAt: string | null;
 }
+export interface IngestionLimitsReport {
+    maxFileBytes: number;
+    maxFiles: null;
+    maxCorpusBytes: null;
+    maxPdfPages: number;
+    maxPdfTextCharacters: number;
+    maxOfficeTextEntries: number;
+    maxOfficeEntryBytes: number;
+    maxOfficeTotalTextBytes: number;
+    maxExternalTextOutputBytes: number;
+    notes: string[];
+}
 export type EmbeddingProvider = "local-hash" | "transformers";
 /**
  * Manifest written next to the LanceDB table at each ingest. It captures the
@@ -59,12 +78,21 @@ export interface IndexManifest {
     ragmirVersion: string;
     embeddingProvider: EmbeddingProvider;
     embeddingModel: string;
+    indexPolicyFingerprint?: string;
     vectorDimension?: number;
     vectorDistanceMetric?: string;
     chunkSize: number;
     chunkOverlap: number;
     fileCount: number;
     chunkCount: number;
+    indexedFiles?: IndexManifestFile[];
+}
+export interface IndexManifestFile {
+    relativePath: string;
+    checksum: string;
+    chunkCount: number;
+    bytes?: number;
+    mtimeMs?: number;
 }
 export interface RedactionConfig {
     enabled: boolean;
@@ -109,6 +137,12 @@ export interface SourceInventory {
 export interface ParsedDocument {
     file: SourceFile;
     text: string;
+    pages?: ParsedPage[];
+}
+export interface ParsedPage {
+    pageNumber: number;
+    charStart: number;
+    charEnd: number;
 }
 export interface TextChunk {
     id: string;
@@ -120,6 +154,8 @@ export interface TextChunk {
     charEnd: number;
     lineStart: number;
     lineEnd: number;
+    pageStart?: number;
+    pageEnd?: number;
     checksum: string;
     bytes: number;
     mtimeMs: number;
@@ -136,9 +172,12 @@ export interface IngestOptions {
 export interface IngestResult {
     discoveredFiles: number;
     supportedFiles: number;
+    supportedBytes: number;
+    largestFileBytes: number;
     indexedFiles: number;
     rebuiltFiles: number;
     reusedFiles: number;
+    policyRebuild: boolean;
     chunks: number;
     skippedFiles: number;
     unsupportedFiles: number;
@@ -161,6 +200,8 @@ export interface SearchOptions {
     cwd?: PathLike;
     topK?: number;
     contextRadius?: number;
+    includePaths?: string[];
+    excludePaths?: string[];
 }
 export interface SearchContextChunk {
     chunkIndex: number;
@@ -169,6 +210,8 @@ export interface SearchContextChunk {
     charEnd: number | null;
     lineStart: number | null;
     lineEnd: number | null;
+    pageStart: number | null;
+    pageEnd: number | null;
     citation: string;
 }
 export interface SearchResult {
@@ -182,6 +225,8 @@ export interface SearchResult {
     charEnd: number | null;
     lineStart: number | null;
     lineEnd: number | null;
+    pageStart: number | null;
+    pageEnd: number | null;
     context: SearchContextChunk[];
 }
 export interface CompactSearchResult {
@@ -193,6 +238,8 @@ export interface CompactSearchResult {
     distance: number | null;
     lineStart: number | null;
     lineEnd: number | null;
+    pageStart: number | null;
+    pageEnd: number | null;
 }
 export interface SourceDuplicateCandidate {
     key: string;
@@ -211,6 +258,8 @@ export interface ResearchOptions {
     cwd?: PathLike;
     topK?: number;
     includeCode?: boolean;
+    includePaths?: string[];
+    excludePaths?: string[];
 }
 export interface ResearchEvidence {
     source: string;
@@ -221,6 +270,8 @@ export interface ResearchEvidence {
     distance: number | null;
     lineStart: number | null;
     lineEnd: number | null;
+    pageStart: number | null;
+    pageEnd: number | null;
     queries: string[];
 }
 export interface CodeEvidence {
@@ -235,8 +286,11 @@ export interface ResearchReport {
     ready: boolean;
     audit: {
         supportedFiles: number;
+        supportedBytes: number;
+        largestFileBytes: number;
         skippedFiles: number;
         unsupportedFiles: number;
+        oversizedFiles: number;
         indexedFiles: number;
         totalChunks: number;
         missingFromIndex: number;
@@ -255,6 +309,8 @@ export interface GoldenQuery {
     query: string;
     expectedPaths: string[];
     expectedCitations?: string[];
+    includePaths?: string[];
+    excludePaths?: string[];
     topK?: number;
 }
 export interface EvaluationOptions {
@@ -267,6 +323,8 @@ export interface EvaluationCaseResult {
     id?: string;
     query: string;
     expectedPaths: string[];
+    includePaths?: string[];
+    excludePaths?: string[];
     topK: number;
     returnedPaths: string[];
     returnedCitations: string[];
@@ -276,7 +334,10 @@ export interface EvaluationCaseResult {
     hit: boolean;
     bestRank: number | null;
     reciprocalRank: number;
+    recall: number;
+    precision: number;
     ndcg: number;
+    latencyMs: number;
 }
 export interface EvaluationResult {
     goldenPath: string;
@@ -286,9 +347,13 @@ export interface EvaluationResult {
     total: number;
     hits: number;
     misses: number;
+    hitRate: number;
     recall: number;
+    precision: number;
     meanReciprocalRank: number;
     ndcg: number;
+    p50LatencyMs: number;
+    p95LatencyMs: number;
     cases: EvaluationCaseResult[];
 }
 export interface AskResult {
@@ -297,6 +362,9 @@ export interface AskResult {
     staleWarning: string | null;
 }
 export interface AuditReport {
+    discoveredFiles: number;
+    supportedBytes: number;
+    largestFileBytes: number;
     indexedFiles: Array<{
         source: string;
         chunks: number;
@@ -330,9 +398,17 @@ export interface DoctorReport {
     transformersAllowRemoteModels: boolean;
     redactionEnabled: boolean;
     accessLog: boolean;
+    privacyProfile: PrivacyProfile;
+    retrievalProfile: RetrievalProfile;
     supportedFiles: number;
+    supportedBytes: number;
+    largestFileBytes: number;
+    maxFileBytes: number;
     skippedFiles: number;
     unsupportedFiles: number;
+    oversizedFiles: number;
+    sensitiveFiles: number;
+    emptyTextFiles: number;
     indexedFiles: number;
     chunksIndexed: number;
     missingFromIndex: number;
@@ -343,14 +419,25 @@ export interface DoctorReport {
         warning: string | null;
     };
     ready: boolean;
+    readiness: {
+        operationalReady: boolean;
+        coverageComplete: boolean;
+        indexPolicyCurrent: boolean;
+        privacyCompliant: boolean;
+        retrievalQualityVerified: boolean;
+        acceptedRisks: string[];
+    };
     nextSteps: string[];
 }
 export interface SecurityAuditReport {
     projectRoot: string;
     zeroTelemetry: true;
+    privacyProfile: PrivacyProfile;
+    retrievalProfile: RetrievalProfile;
     providers: {
         embedding: EmbeddingProvider;
         embeddingModel: string;
+        embeddingModelRevision: string;
         embeddingModelPath: string;
         transformersAllowRemoteModels: boolean;
         llmGeneration: false;
@@ -370,6 +457,13 @@ export interface SecurityAuditReport {
         gitIgnored: boolean;
         encryptedAtRest: "external-required";
     };
+    permissions: {
+        checked: boolean;
+        configPrivate: boolean | null;
+        rawDirPrivate: boolean | null;
+        storageDirPrivate: boolean | null;
+        accessLogPrivate: boolean | null;
+    };
     mcp: {
         maxTopK: number;
         destructiveToolsExposed: false;

package/dist/types.d.ts.map

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package/dist/version.d.ts

@@ -1,2 +1,2 @@
-export declare const VERSION = "2.7.0";
+export declare const VERSION = "2.8.0";
 //# sourceMappingURL=version.d.ts.map

package/dist/version.js

@@ -1,2 +1,2 @@
-export const VERSION = "2.7.0";
+export const VERSION = "2.8.0";
 //# sourceMappingURL=version.js.map

package/examples/document-evidence-benchmark/.ragmir/config.json

@@ -6,7 +6,8 @@
   "embeddingModelPath": ".ragmir/models",
   "tableName": "chunks",
   "embeddingProvider": "local-hash",
-  "embeddingModel": "mixedbread-ai/mxbai-embed-xsmall-v1",
+  "embeddingModel": "intfloat/multilingual-e5-small",
+  "embeddingModelRevision": "main",
   "transformersAllowRemoteModels": false,
   "redaction": {
     "enabled": true,

package/examples/document-evidence-benchmark/README.md

@@ -3,10 +3,12 @@
 Synthetic document benchmark for Ragmir retrieval. It is intentionally safe to commit: the contract,
 RFP, runbook, spec, and legal/tax notes are fictional and contain no customer data.
 
-This benchmark checks two things:
+This benchmark checks three things:
 
-- `recall@k`: each query retrieves the expected source file.
+- `Recall@K`: each query retrieves the expected source file or passage.
 - exact citations: each query retrieves the expected `relative/path:Lx-Ly#chunkIndex` citation.
+- embedded PDF text: the synthetic PDF is extracted and retrieved with an exact
+  `relative/path:p1:Lx-Ly#chunkIndex` page citation.
 
 The corpus is small on purpose so every source file fits in a single chunk. That keeps the expected
 citations deterministic while exercising the same CLI path used for private dogfooding.
@@ -23,6 +25,7 @@ Then run the benchmark from this folder:
 
 ```bash
 cd packages/ragmir-core/examples/document-evidence-benchmark
+node ../../dist/cli.js init
 node ../../dist/cli.js ingest
 node ../../dist/cli.js evaluate --golden golden-queries.json --json
 node ../../dist/cli.js evaluate --golden golden-queries.json --fail-under 1

package/examples/document-evidence-benchmark/golden-queries.json

@@ -30,6 +30,12 @@
       "query": "legal tax residency review professional review filing positions",
       "expectedPaths": ["raw/legal-tax/residency-review-note.md"],
       "expectedCitations": ["raw/legal-tax/residency-review-note.md:L1-L10#0"]
+    },
+    {
+      "id": "pdf-embedded-text-page-citation",
+      "query": "Synthetic confidential PDF",
+      "expectedPaths": ["raw/contracts/pdf-control-evidence.pdf"],
+      "expectedCitations": ["raw/contracts/pdf-control-evidence.pdf:p1:L1-L1#0"]
     }
   ]
 }

package/examples/document-evidence-benchmark/raw/contracts/pdf-control-evidence.pdf

@@ -0,0 +1,32 @@
+%PDF-1.4
+1 0 obj
+<< /Type /Catalog /Pages 2 0 R >>
+endobj
+2 0 obj
+<< /Type /Pages /Kids [3 0 R] /Count 1 >>
+endobj
+3 0 obj
+<< /Type /Page /Parent 2 0 R /MediaBox [0 0 612 792] /Resources << /Font << /F1 4 0 R >> >> /Contents 5 0 R >>
+endobj
+4 0 obj
+<< /Type /Font /Subtype /Type1 /BaseFont /Helvetica >>
+endobj
+5 0 obj
+<< /Length 56 >>
+stream
+BT /F1 18 Tf 72 720 Td (Synthetic confidential PDF) Tj ET
+endstream
+endobj
+xref
+0 6
+0000000000 65535 f
+0000000009 00000 n
+0000000058 00000 n
+0000000115 00000 n
+0000000241 00000 n
+0000000311 00000 n
+trailer
+<< /Size 6 /Root 1 0 R >>
+startxref
+418
+%%EOF

package/examples/sovereign-rag-demo/.ragmir/config.json

@@ -6,7 +6,8 @@
   "embeddingModelPath": ".ragmir/models",
   "tableName": "chunks",
   "embeddingProvider": "local-hash",
-  "embeddingModel": "mixedbread-ai/mxbai-embed-xsmall-v1",
+  "embeddingModel": "intfloat/multilingual-e5-small",
+  "embeddingModelRevision": "main",
   "transformersAllowRemoteModels": false,
   "redaction": {
     "enabled": true,

package/examples/sovereign-rag-demo/README.md

@@ -27,6 +27,9 @@ Then run the CLI from this folder:
 
 ```bash
 cd packages/ragmir-core/examples/sovereign-rag-demo
+node ../../dist/cli.js init
+# POSIX only: this example deliberately uses a custom tracked rawDir.
+chmod 700 raw
 node ../../dist/cli.js security-audit
 node ../../dist/cli.js ingest
 node ../../dist/cli.js search "offline retrieval approval"
@@ -39,6 +42,10 @@ node ../../dist/cli.js audit --unsupported
 node ../../dist/cli.js status
 ```
 
+`init` is idempotent here and applies owner-only permissions to the copied `.ragmir` config. The
+example deliberately keeps documents under the custom tracked `raw/` path, so secure that directory
+explicitly on POSIX before a strict audit. Git and package archives cannot encode its `0700` mode.
+
 This example uses `embeddingProvider: "local-hash"`, so it does not require a model runtime.
 Retrieval is lexical/hash-based rather than model-semantic.
 
@@ -68,7 +75,8 @@ To compare no-model retrieval with semantic local retrieval, change `.ragmir/con
 ```json
 {
   "embeddingProvider": "transformers",
-  "embeddingModel": "mixedbread-ai/mxbai-embed-xsmall-v1",
+  "embeddingModel": "intfloat/multilingual-e5-small",
+  "embeddingModelRevision": "main",
   "embeddingModelPath": ".ragmir/models",
   "transformersAllowRemoteModels": false
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jcode.labs/ragmir",
-  "version": "2.7.0",
+  "version": "2.8.0",
   "description": "Ragmir Core: open-source sovereign local RAG for confidential datasets and AI agents.",
   "type": "module",
   "license": "MIT",
@@ -69,8 +69,8 @@
     "unpdf": "^1.4.0",
     "yaml": "^2.9.0",
     "zod": "^4.1.13",
-    "@jcode.labs/ragmir-chat": "2.7.0",
-    "@jcode.labs/ragmir-tts": "2.7.0"
+    "@jcode.labs/ragmir-tts": "2.8.0",
+    "@jcode.labs/ragmir-chat": "2.8.0"
   },
   "devDependencies": {
     "@types/html-to-text": "^9.0.4",

package/skills/ragmir/SKILL.md

@@ -111,7 +111,8 @@ Optional semantic embedding mode:
 ```json
 {
   "embeddingProvider": "transformers",
-  "embeddingModel": "mixedbread-ai/mxbai-embed-xsmall-v1",
+  "embeddingModel": "intfloat/multilingual-e5-small",
+  "embeddingModelRevision": "main",
   "embeddingModelPath": ".ragmir/models",
   "transformersAllowRemoteModels": false
 }
@@ -149,8 +150,11 @@ pnpm exec rgr status
 has no warnings. Normal `rgr ingest` reuses unchanged rows; use `rgr ingest --rebuild` after changing
 embedding provider/model or chunking settings. `rgr ingest --json` reports `emptyTextFiles` when
 supported files, typically scanned PDFs, produce no indexable text. `rgr doctor` should show
-`ready=true` before relying on the index. The audit must show no missing or stale supported files, and
-the security audit should not show warnings before relying on Ragmir for sensitive work.
+`ready=true` before relying on the index. Empty-text, oversized, missing, or stale coverage keeps it
+false. Run `rgr limits` to inspect the active per-file and parser bounds. There is no fixed file-count
+or total-corpus-byte ceiling, so benchmark large corpora on their target machine. The audit must show
+no missing or stale supported files, and the security audit should not show warnings before relying
+on Ragmir for sensitive work.
 
 Default retrieval is tuned for broader recall (`topK: 8`, `chunkOverlap: 200`). Keep MCP retrieval
 bounded by `mcpMaxTopK`, and raise `--top-k` only when the first results are too narrow.
@@ -181,6 +185,10 @@ Use search when you need exact source passages:
 pnpm exec rgr search "your query"
 ```
 
+Use repeatable `--include-path` and `--exclude-path` filters when primary evidence, research notes,
+or mirror/archive directories must be evaluated separately. The same `includePaths` and
+`excludePaths` arrays are available through MCP and per query in golden evaluation files.
+
 Use research when the user asks for broad context, implementation planning, review preparation, or a
 cross-document audit: