@jcode.labs/ragmir 2.7.0 → 2.8.0

package/dist/files.js.map

@@ -1 +1 @@
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package/dist/index-diagnostics.d.ts

@@ -5,7 +5,7 @@ import type { Config } from "./types.js";
  * required metadata). A stored manifest with a lower schemaVersion means the
  * index predates the current code and should be rebuilt.
  */
-export declare const INDEX_SCHEMA_VERSION = 2;
+export declare const INDEX_SCHEMA_VERSION = 6;
 /**
  * Detect a stale or incompatible index without re-scanning every source file.
  * Returns a human-readable warning when the stored manifest is missing, was

package/dist/index-diagnostics.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index-diagnostics.d.ts","sourceRoot":"","sources":["../src/index-diagnostics.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAExC;;;;;GAKG;AACH,eAAO,MAAM,oBAAoB,IAAI,CAAA;AAErC;;;;;;;;;GASG;AACH,wBAAsB,wBAAwB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CA+BrF;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAKvF"}
+{"version":3,"file":"index-diagnostics.d.ts","sourceRoot":"","sources":["../src/index-diagnostics.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAExC;;;;;GAKG;AACH,eAAO,MAAM,oBAAoB,IAAI,CAAA;AAErC;;;;;;;;;GASG;AACH,wBAAsB,wBAAwB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAoCrF;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAKvF"}

package/dist/index-diagnostics.js

@@ -1,4 +1,5 @@
 import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
+import { indexPolicyFingerprint } from "./index-policy.js";
 import { readIndexManifest } from "./store.js";
 /**
  * Bumped when the index layout or manifest meaning changes in a way that
@@ -6,7 +7,7 @@ import { readIndexManifest } from "./store.js";
  * required metadata). A stored manifest with a lower schemaVersion means the
  * index predates the current code and should be rebuilt.
  */
-export const INDEX_SCHEMA_VERSION = 2;
+export const INDEX_SCHEMA_VERSION = 6;
 /**
  * Detect a stale or incompatible index without re-scanning every source file.
  * Returns a human-readable warning when the stored manifest is missing, was
@@ -22,8 +23,8 @@ export async function getIndexFreshnessWarning(config) {
     if (!manifest) {
         return null;
     }
-    if (manifest.schemaVersion < INDEX_SCHEMA_VERSION) {
-        return `Index schema is outdated (stored v${manifest.schemaVersion}, current v${INDEX_SCHEMA_VERSION}). Rebuild with \`rgr ingest --rebuild\` to use the latest index format.`;
+    if (manifest.schemaVersion !== INDEX_SCHEMA_VERSION) {
+        return `Index schema is incompatible (stored v${manifest.schemaVersion}, current v${INDEX_SCHEMA_VERSION}). Rebuild with \`rgr ingest --rebuild\` to use the latest index format.`;
     }
     if (manifest.embeddingProvider !== config.embeddingProvider) {
         return `Index was built with embedding provider "${manifest.embeddingProvider}" but the active config uses "${config.embeddingProvider}". Rebuild with \`rgr ingest --rebuild\`.`;
@@ -38,6 +39,10 @@ export async function getIndexFreshnessWarning(config) {
     if (manifest.chunkSize !== config.chunkSize || manifest.chunkOverlap !== config.chunkOverlap) {
         return `Index was built with chunkSize=${manifest.chunkSize}/chunkOverlap=${manifest.chunkOverlap} but the active config uses chunkSize=${config.chunkSize}/chunkOverlap=${config.chunkOverlap}. Rebuild with \`rgr ingest --rebuild\`.`;
     }
+    const activeFingerprint = indexPolicyFingerprint(config);
+    if (manifest.indexPolicyFingerprint !== activeFingerprint) {
+        return "Index content policy differs from the active parsing, redaction, chunking, or embedding policy. Rebuild with `rgr ingest --rebuild`.";
+    }
     return null;
 }
 /**

package/dist/index-diagnostics.js.map

@@ -1 +1 @@
-{"version":3,"file":"index-diagnostics.js","sourceRoot":"","sources":["../src/index-diagnostics.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAA;AAG9C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC,CAAA;AAErC;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,wBAAwB,CAAC,MAAc;IAC3D,MAAM,QAAQ,GAAG,MAAM,iBAAiB,CAAC,MAAM,CAAC,CAAA;IAEhD,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IAED,IAAI,QAAQ,CAAC,aAAa,GAAG,oBAAoB,EAAE,CAAC;QAClD,OAAO,qCAAqC,QAAQ,CAAC,aAAa,cAAc,oBAAoB,0EAA0E,CAAA;IAChL,CAAC;IAED,IAAI,QAAQ,CAAC,iBAAiB,KAAK,MAAM,CAAC,iBAAiB,EAAE,CAAC;QAC5D,OAAO,4CAA4C,QAAQ,CAAC,iBAAiB,iCAAiC,MAAM,CAAC,iBAAiB,2CAA2C,CAAA;IACnL,CAAC;IAED,IAAI,QAAQ,CAAC,cAAc,KAAK,MAAM,CAAC,cAAc,EAAE,CAAC;QACtD,OAAO,yCAAyC,QAAQ,CAAC,cAAc,iCAAiC,MAAM,CAAC,cAAc,8DAA8D,CAAA;IAC7L,CAAC;IAED,IACE,QAAQ,CAAC,oBAAoB,KAAK,SAAS;QAC3C,QAAQ,CAAC,oBAAoB,KAAK,sBAAsB,EACxD,CAAC;QACD,OAAO,gDAAgD,QAAQ,CAAC,oBAAoB,+BAA+B,sBAAsB,2CAA2C,CAAA;IACtL,CAAC;IAED,IAAI,QAAQ,CAAC,SAAS,KAAK,MAAM,CAAC,SAAS,IAAI,QAAQ,CAAC,YAAY,KAAK,MAAM,CAAC,YAAY,EAAE,CAAC;QAC7F,OAAO,kCAAkC,QAAQ,CAAC,SAAS,iBAAiB,QAAQ,CAAC,YAAY,yCAAyC,MAAM,CAAC,SAAS,iBAAiB,MAAM,CAAC,YAAY,0CAA0C,CAAA;IAC1O,CAAC;IAED,OAAO,IAAI,CAAA;AACb,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,MAAc,EAAE,UAAkB;IACtE,IAAI,UAAU,IAAI,MAAM,CAAC,mBAAmB,EAAE,CAAC;QAC7C,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,kCAAkC,MAAM,CAAC,mBAAmB,OAAO,UAAU,qKAAqK,CAAA;AAC3P,CAAC"}
+{"version":3,"file":"index-diagnostics.js","sourceRoot":"","sources":["../src/index-diagnostics.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,mBAAmB,CAAA;AAC1D,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAA;AAG9C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC,CAAA;AAErC;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,wBAAwB,CAAC,MAAc;IAC3D,MAAM,QAAQ,GAAG,MAAM,iBAAiB,CAAC,MAAM,CAAC,CAAA;IAEhD,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IAED,IAAI,QAAQ,CAAC,aAAa,KAAK,oBAAoB,EAAE,CAAC;QACpD,OAAO,yCAAyC,QAAQ,CAAC,aAAa,cAAc,oBAAoB,0EAA0E,CAAA;IACpL,CAAC;IAED,IAAI,QAAQ,CAAC,iBAAiB,KAAK,MAAM,CAAC,iBAAiB,EAAE,CAAC;QAC5D,OAAO,4CAA4C,QAAQ,CAAC,iBAAiB,iCAAiC,MAAM,CAAC,iBAAiB,2CAA2C,CAAA;IACnL,CAAC;IAED,IAAI,QAAQ,CAAC,cAAc,KAAK,MAAM,CAAC,cAAc,EAAE,CAAC;QACtD,OAAO,yCAAyC,QAAQ,CAAC,cAAc,iCAAiC,MAAM,CAAC,cAAc,8DAA8D,CAAA;IAC7L,CAAC;IAED,IACE,QAAQ,CAAC,oBAAoB,KAAK,SAAS;QAC3C,QAAQ,CAAC,oBAAoB,KAAK,sBAAsB,EACxD,CAAC;QACD,OAAO,gDAAgD,QAAQ,CAAC,oBAAoB,+BAA+B,sBAAsB,2CAA2C,CAAA;IACtL,CAAC;IAED,IAAI,QAAQ,CAAC,SAAS,KAAK,MAAM,CAAC,SAAS,IAAI,QAAQ,CAAC,YAAY,KAAK,MAAM,CAAC,YAAY,EAAE,CAAC;QAC7F,OAAO,kCAAkC,QAAQ,CAAC,SAAS,iBAAiB,QAAQ,CAAC,YAAY,yCAAyC,MAAM,CAAC,SAAS,iBAAiB,MAAM,CAAC,YAAY,0CAA0C,CAAA;IAC1O,CAAC;IAED,MAAM,iBAAiB,GAAG,sBAAsB,CAAC,MAAM,CAAC,CAAA;IACxD,IAAI,QAAQ,CAAC,sBAAsB,KAAK,iBAAiB,EAAE,CAAC;QAC1D,OAAO,sIAAsI,CAAA;IAC/I,CAAC;IAED,OAAO,IAAI,CAAA;AACb,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,MAAc,EAAE,UAAkB;IACtE,IAAI,UAAU,IAAI,MAAM,CAAC,mBAAmB,EAAE,CAAC;QAC7C,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,kCAAkC,MAAM,CAAC,mBAAmB,OAAO,UAAU,qKAAqK,CAAA;AAC3P,CAAC"}

package/dist/index-policy.d.ts

@@ -0,0 +1,3 @@
+import type { Config } from "./types.js";
+export declare function indexPolicyFingerprint(config: Config): string;
+//# sourceMappingURL=index-policy.d.ts.map

package/dist/index-policy.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index-policy.d.ts","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAKxC,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAwB7D"}

package/dist/index-policy.js

@@ -0,0 +1,28 @@
+import { createHash } from "node:crypto";
+const INDEX_CONTENT_POLICY_VERSION = 1;
+const CHUNKING_ADAPTER_VERSION = 2;
+export function indexPolicyFingerprint(config) {
+    const policy = {
+        version: INDEX_CONTENT_POLICY_VERSION,
+        embedding: {
+            adapterVersion: 1,
+            provider: config.embeddingProvider,
+            model: config.embeddingModel,
+            revision: config.embeddingModelRevision,
+        },
+        chunking: {
+            adapterVersion: CHUNKING_ADAPTER_VERSION,
+            size: config.chunkSize,
+            overlap: config.chunkOverlap,
+        },
+        redaction: config.redaction,
+        extraction: {
+            parserVersion: 2,
+            pdfOcrCommand: config.pdfOcrCommand,
+            imageOcrCommand: config.imageOcrCommand,
+            legacyWordCommand: config.legacyWordCommand,
+        },
+    };
+    return createHash("sha256").update(JSON.stringify(policy)).digest("hex");
+}
+//# sourceMappingURL=index-policy.js.map

package/dist/index-policy.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index-policy.js","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AAGxC,MAAM,4BAA4B,GAAG,CAAC,CAAA;AACtC,MAAM,wBAAwB,GAAG,CAAC,CAAA;AAElC,MAAM,UAAU,sBAAsB,CAAC,MAAc;IACnD,MAAM,MAAM,GAAG;QACb,OAAO,EAAE,4BAA4B;QACrC,SAAS,EAAE;YACT,cAAc,EAAE,CAAC;YACjB,QAAQ,EAAE,MAAM,CAAC,iBAAiB;YAClC,KAAK,EAAE,MAAM,CAAC,cAAc;YAC5B,QAAQ,EAAE,MAAM,CAAC,sBAAsB;SACxC;QACD,QAAQ,EAAE;YACR,cAAc,EAAE,wBAAwB;YACxC,IAAI,EAAE,MAAM,CAAC,SAAS;YACtB,OAAO,EAAE,MAAM,CAAC,YAAY;SAC7B;QACD,SAAS,EAAE,MAAM,CAAC,SAAS;QAC3B,UAAU,EAAE;YACV,aAAa,EAAE,CAAC;YAChB,aAAa,EAAE,MAAM,CAAC,aAAa;YACnC,eAAe,EAAE,MAAM,CAAC,eAAe;YACvC,iBAAiB,EAAE,MAAM,CAAC,iBAAiB;SAC5C;KACF,CAAA;IAED,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;AAC1E,CAAC"}

package/dist/index.d.ts

@@ -7,6 +7,7 @@ export { evaluateGoldenQueries } from "./evaluate.js";
 export { getIndexFreshnessWarning, getLexicalScanWarning, INDEX_SCHEMA_VERSION, } from "./index-diagnostics.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
+export { ingestionLimits } from "./limits.js";
 export { serveMcp } from "./mcp.js";
 export type { PackageManager, RagmirCommand } from "./package-manager.js";
 export { detectPackageManager, kbCommand, ragmirCommand, rgrCommand } from "./package-manager.js";
@@ -23,6 +24,6 @@ export type { AgentHelperFile, AgentInstallMode, AgentInstallScope, AgentSkillIn
 export { bundledSkillPath, installAgentSkills, installSkill, parseAgentTargets, SUPPORTED_AGENT_TARGETS, } from "./skill.js";
 export type { AddSourceEntriesOptions, AddSourceEntriesResult, SourceEntriesResult, } from "./sources.js";
 export { addSourceEntries, listSourceEntries } from "./sources.js";
-export type { AccessLogAction, AccessLogUsageOptions, AccessLogUsageReport, AskResult, AuditReport, CodeEvidence, CompactSearchResult, Config, DestroyIndexResult, DoctorReport, EvaluationCaseResult, EvaluationOptions, EvaluationResult, GoldenQuery, IndexManifest, IngestResult, ResearchEvidence, ResearchOptions, ResearchReport, SearchContextChunk, SearchResult, SecurityAuditReport, SourceDiagnostics, SourceDuplicateCandidate, SourcePathCandidate, } from "./types.js";
+export type { AccessLogAction, AccessLogUsageOptions, AccessLogUsageReport, AskResult, AuditReport, CodeEvidence, CompactSearchResult, Config, DestroyIndexResult, DoctorReport, EvaluationCaseResult, EvaluationOptions, EvaluationResult, GoldenQuery, IndexManifest, IndexManifestFile, IngestionLimitsReport, IngestResult, ParsedPage, PrivacyProfile, ResearchEvidence, ResearchOptions, ResearchReport, RetrievalProfile, SearchContextChunk, SearchResult, SecurityAuditReport, SourceDiagnostics, SourceDuplicateCandidate, SourcePathCandidate, } from "./types.js";
 export { VERSION } from "./version.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AAC5E,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AACrD,OAAO,EACL,wBAAwB,EACxB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAA;AACzE,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAA;AACjG,YAAY,EAAE,mBAAmB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAA;AAC/E,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACrF,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AAC/D,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAChF,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AACzC,YAAY,EACV,eAAe,EACf,gBAAgB,EAChB,iBAAiB,EACjB,sBAAsB,EACtB,WAAW,EACX,yBAAyB,EACzB,wBAAwB,EACxB,mBAAmB,EACnB,kBAAkB,GACnB,MAAM,YAAY,CAAA;AACnB,OAAO,EACL,gBAAgB,EAChB,kBAAkB,EAClB,YAAY,EACZ,iBAAiB,EACjB,uBAAuB,GACxB,MAAM,YAAY,CAAA;AACnB,YAAY,EACV,uBAAuB,EACvB,sBAAsB,EACtB,mBAAmB,GACpB,MAAM,cAAc,CAAA;AACrB,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAClE,YAAY,EACV,eAAe,EACf,qBAAqB,EACrB,oBAAoB,EACpB,SAAS,EACT,WAAW,EACX,YAAY,EACZ,mBAAmB,EACnB,MAAM,EACN,kBAAkB,EAClB,YAAY,EACZ,oBAAoB,EACpB,iBAAiB,EACjB,gBAAgB,EAChB,WAAW,EACX,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,kBAAkB,EAClB,YAAY,EACZ,mBAAmB,EACnB,iBAAiB,EACjB,wBAAwB,EACxB,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AAC5E,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AACrD,OAAO,EACL,wBAAwB,EACxB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAA;AACzE,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAA;AACjG,YAAY,EAAE,mBAAmB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAA;AAC/E,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACrF,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AAC/D,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAChF,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AACzC,YAAY,EACV,eAAe,EACf,gBAAgB,EAChB,iBAAiB,EACjB,sBAAsB,EACtB,WAAW,EACX,yBAAyB,EACzB,wBAAwB,EACxB,mBAAmB,EACnB,kBAAkB,GACnB,MAAM,YAAY,CAAA;AACnB,OAAO,EACL,gBAAgB,EAChB,kBAAkB,EAClB,YAAY,EACZ,iBAAiB,EACjB,uBAAuB,GACxB,MAAM,YAAY,CAAA;AACnB,YAAY,EACV,uBAAuB,EACvB,sBAAsB,EACtB,mBAAmB,GACpB,MAAM,cAAc,CAAA;AACrB,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAClE,YAAY,EACV,eAAe,EACf,qBAAqB,EACrB,oBAAoB,EACpB,SAAS,EACT,WAAW,EACX,YAAY,EACZ,mBAAmB,EACnB,MAAM,EACN,kBAAkB,EAClB,YAAY,EACZ,oBAAoB,EACpB,iBAAiB,EACjB,gBAAgB,EAChB,WAAW,EACX,aAAa,EACb,iBAAiB,EACjB,qBAAqB,EACrB,YAAY,EACZ,UAAU,EACV,cAAc,EACd,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,gBAAgB,EAChB,kBAAkB,EAClB,YAAY,EACZ,mBAAmB,EACnB,iBAAiB,EACjB,wBAAwB,EACxB,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/index.js

@@ -7,6 +7,7 @@ export { evaluateGoldenQueries } from "./evaluate.js";
 export { getIndexFreshnessWarning, getLexicalScanWarning, INDEX_SCHEMA_VERSION, } from "./index-diagnostics.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
+export { ingestionLimits } from "./limits.js";
 export { serveMcp } from "./mcp.js";
 export { detectPackageManager, kbCommand, ragmirCommand, rgrCommand } from "./package-manager.js";
 export { routePrompt } from "./prompt-routing.js";

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AAC5E,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AACrD,OAAO,EACL,wBAAwB,EACxB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AAEnC,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAA;AAEjG,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACrF,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AAE/D,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAYzC,OAAO,EACL,gBAAgB,EAChB,kBAAkB,EAClB,YAAY,EACZ,iBAAiB,EACjB,uBAAuB,GACxB,MAAM,YAAY,CAAA;AAMnB,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAiClE,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/ingest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAuBA,OAAO,KAAK,EACV,WAAW,EACX,aAAa,EACb,YAAY,EAMb,MAAM,YAAY,CAAA;AAoBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CA+H/E;AAkCD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,WAAW,CAAC,CAiErE"}
+{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAuBA,OAAO,KAAK,EACV,WAAW,EAGX,aAAa,EACb,YAAY,EAMb,MAAM,YAAY,CAAA;AAmBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CA+L/E;AA0BD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,WAAW,CAAC,CAwErE"}

package/dist/ingest.js

@@ -1,4 +1,3 @@
-import path from "node:path";
 import { recordAccess } from "./access-log.js";
 import { chunkDocument } from "./chunking.js";
 import { loadConfig } from "./config.js";
@@ -6,12 +5,11 @@ import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
 import { embedTexts } from "./embeddings.js";
 import { countSkippedByReason, inventorySourceFiles, summarizeUnsupportedExtensions, } from "./files.js";
 import { INDEX_SCHEMA_VERSION } from "./index-diagnostics.js";
+import { indexPolicyFingerprint } from "./index-policy.js";
 import { parseFile } from "./parsing.js";
 import { redactText, totalRedactions } from "./redaction.js";
-import { openRowsTable, readEmptyTextFiles, readRows, writeEmptyTextFiles, writeIndexManifest, writeRows, } from "./store.js";
-import { normalizeForMatch } from "./text.js";
+import { openRowsTable, readEmptyTextFiles, readIndexManifest, updateRows, writeEmptyTextFiles, writeIndexManifest, writeRows, } from "./store.js";
 import { VERSION } from "./version.js";
-const MAX_AUDIT_ROWS = 100_000;
 const MAX_SOURCE_DIAGNOSTIC_ITEMS = 20;
 const ARCHIVE_PATH_PATTERNS = [
     /(^|[/_-])archive(s)?([/_-]|$)/iu,
@@ -29,15 +27,36 @@ const MIRROR_PATH_PATTERNS = [
 ];
 export async function ingest(options = {}) {
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
-    const inventory = await inventorySourceFiles(config);
+    const policyFingerprint = indexPolicyFingerprint(config);
+    const existingManifest = await readIndexManifest(config);
+    const manifestCompatible = !options.rebuild &&
+        existingManifest?.schemaVersion === INDEX_SCHEMA_VERSION &&
+        existingManifest.indexPolicyFingerprint === policyFingerprint &&
+        existingManifest.indexedFiles !== undefined;
+    const existingTable = manifestCompatible ? await openRowsTable(config) : null;
+    const storedEmptyFiles = manifestCompatible ? await readEmptyTextFiles(config) : [];
+    const knownFiles = new Map([...(existingManifest?.indexedFiles ?? []), ...storedEmptyFiles].map((file) => [
+        file.relativePath,
+        file,
+    ]));
+    const inventory = await inventorySourceFiles(config, { knownFiles });
     const files = inventory.supportedFiles;
+    const inventoryMetrics = sourceInventoryMetrics(files);
     const currentFiles = new Map(files.map((file) => [file.relativePath, file]));
-    const existingRows = options.rebuild ? [] : await readRows(config);
-    const reusableRows = options.rebuild ? [] : reusableIndexRows(existingRows, currentFiles, config);
-    const reusableFiles = new Set(reusableRows.map((row) => row.relativePath));
-    const filesToIndex = options.rebuild
-        ? files
-        : files.filter((file) => !reusableFiles.has(file.relativePath));
+    const policyRebuild = !options.rebuild &&
+        existingManifest !== null &&
+        (existingManifest.schemaVersion !== INDEX_SCHEMA_VERSION ||
+            existingManifest.indexPolicyFingerprint !== policyFingerprint);
+    const canReuse = manifestCompatible && existingTable !== null;
+    const previousIndexedFiles = canReuse ? (existingManifest.indexedFiles ?? []) : [];
+    const previousEmptyFiles = canReuse ? storedEmptyFiles : [];
+    const reusableIndexedFiles = previousIndexedFiles.filter((file) => currentFiles.get(file.relativePath)?.checksum === file.checksum);
+    const reusableEmptyFiles = previousEmptyFiles.filter((file) => currentFiles.get(file.relativePath)?.checksum === file.checksum);
+    const reusableFiles = new Set([
+        ...reusableIndexedFiles.map((file) => file.relativePath),
+        ...reusableEmptyFiles.map((file) => file.relativePath),
+    ]);
+    const filesToIndex = files.filter((file) => !reusableFiles.has(file.relativePath));
     const allChunks = [];
     const errors = [];
     const redactionCounts = [];
@@ -89,10 +108,22 @@ export async function ingest(options = {}) {
             });
         }
     }
-    const indexRows = [...reusableRows, ...rows];
-    const writeResult = await writeRows(indexRows, config);
-    if (indexRows.length > 0) {
-        const firstRow = indexRows[0];
+    const rebuiltIndexedFiles = indexedFileRecords(rows);
+    const indexedFiles = [...reusableIndexedFiles, ...rebuiltIndexedFiles].sort((a, b) => a.relativePath.localeCompare(b.relativePath));
+    const chunkCount = indexedFiles.reduce((sum, file) => sum + file.chunkCount, 0);
+    const previousPaths = new Set(previousIndexedFiles.map((file) => file.relativePath));
+    const currentPaths = new Set(files.map((file) => file.relativePath));
+    const replacePaths = [
+        ...filesToIndex.map((file) => file.relativePath),
+        ...[...previousPaths].filter((relativePath) => !currentPaths.has(relativePath)),
+    ];
+    const writeResult = !canReuse || chunkCount === 0
+        ? await writeRows(rows, config)
+        : replacePaths.length > 0
+            ? await updateRows(rows, replacePaths, config)
+            : { vectorIndexWarning: null, lexicalIndexWarning: null };
+    if (chunkCount > 0) {
+        const firstRow = rows[0] ?? (await firstStoredRow(config));
         if (!firstRow) {
             throw new Error("Cannot write an index manifest without indexed rows.");
         }
@@ -102,35 +133,55 @@ export async function ingest(options = {}) {
             ragmirVersion: VERSION,
             embeddingProvider: config.embeddingProvider,
             embeddingModel: config.embeddingModel,
+            indexPolicyFingerprint: policyFingerprint,
             vectorDimension: firstRow.vector.length,
             vectorDistanceMetric: VECTOR_DISTANCE_METRIC,
             chunkSize: config.chunkSize,
             chunkOverlap: config.chunkOverlap,
-            fileCount: new Set(indexRows.map((row) => row.relativePath)).size,
-            chunkCount: indexRows.length,
+            fileCount: indexedFiles.length,
+            chunkCount,
+            indexedFiles,
         }, config);
     }
-    await writeEmptyTextFiles(emptyTextFiles.flatMap((relativePath) => {
-        const file = currentFiles.get(relativePath);
-        return file ? [{ relativePath, checksum: file.checksum }] : [];
-    }), config);
+    await writeEmptyTextFiles([
+        ...reusableEmptyFiles,
+        ...emptyTextFiles.flatMap((relativePath) => {
+            const file = currentFiles.get(relativePath);
+            return file
+                ? [
+                    {
+                        relativePath,
+                        checksum: file.checksum,
+                        bytes: file.bytes,
+                        mtimeMs: file.mtimeMs,
+                    },
+                ]
+                : [];
+        }),
+    ], config);
     await recordAccess(config, {
         action: "ingest",
-        resultCount: indexRows.length,
+        resultCount: chunkCount,
         redactions: totalRedactions(redactionCounts),
     });
     return {
-        indexedFiles: new Set(indexRows.map((row) => row.relativePath)).size,
+        indexedFiles: indexedFiles.length,
         rebuiltFiles: new Set(rows.map((row) => row.relativePath)).size,
         reusedFiles: reusableFiles.size,
-        chunks: indexRows.length,
+        policyRebuild,
+        chunks: chunkCount,
         discoveredFiles: inventory.discoveredFiles,
         supportedFiles: files.length,
+        supportedBytes: inventoryMetrics.supportedBytes,
+        largestFileBytes: inventoryMetrics.largestFileBytes,
         skippedFiles: inventory.skippedFiles.length + emptyTextFiles.length,
         unsupportedFiles: countSkippedByReason(inventory.skippedFiles, "unsupported-extension"),
         oversizedFiles: countSkippedByReason(inventory.skippedFiles, "oversized"),
         sensitiveFiles: countSkippedByReason(inventory.skippedFiles, "sensitive-name"),
-        emptyTextFiles,
+        emptyTextFiles: [
+            ...reusableEmptyFiles.map((file) => file.relativePath),
+            ...emptyTextFiles,
+        ].sort(),
         unsupportedExtensions: summarizeUnsupportedExtensions(inventory.skippedFiles),
         redactions: totalRedactions(redactionCounts),
         vectorIndexWarning: writeResult.vectorIndexWarning,
@@ -138,36 +189,41 @@ export async function ingest(options = {}) {
         errors,
     };
 }
-function reusableIndexRows(rows, currentFiles, config) {
-    const rowsByFile = new Map();
+function indexedFileRecords(rows) {
+    const records = new Map();
     for (const row of rows) {
-        const fileRows = rowsByFile.get(row.relativePath) ?? [];
-        fileRows.push(row);
-        rowsByFile.set(row.relativePath, fileRows);
+        const current = records.get(row.relativePath);
+        records.set(row.relativePath, {
+            relativePath: row.relativePath,
+            checksum: row.checksum,
+            chunkCount: (current?.chunkCount ?? 0) + 1,
+            bytes: row.bytes,
+            mtimeMs: row.mtimeMs,
+        });
     }
-    const reusableRows = [];
-    for (const [relativePath, fileRows] of rowsByFile) {
-        const file = currentFiles.get(relativePath);
-        if (!file) {
-            continue;
-        }
-        if (fileRows.every((row) => row.checksum === file.checksum &&
-            row.embeddingProvider === config.embeddingProvider &&
-            row.embeddingModel === config.embeddingModel)) {
-            reusableRows.push(...fileRows);
-        }
+    return [...records.values()];
+}
+async function firstStoredRow(config) {
+    const table = await openRowsTable(config);
+    if (!table) {
+        return null;
     }
-    return reusableRows;
+    const [row] = (await table.query().limit(1).toArray());
+    return row ?? null;
 }
 export async function audit(cwd = process.cwd()) {
     const config = await loadConfig(cwd);
     const inventory = await inventorySourceFiles(config);
     const files = inventory.supportedFiles;
+    const inventoryMetrics = sourceInventoryMetrics(files);
     const supportedFiles = files.map((file) => file.relativePath);
     const table = await openRowsTable(config);
     const emptyTextFiles = await currentEmptyTextFiles(config, files);
     if (!table) {
         return {
+            discoveredFiles: inventory.discoveredFiles,
+            supportedBytes: inventoryMetrics.supportedBytes,
+            largestFileBytes: inventoryMetrics.largestFileBytes,
             indexedFiles: [],
             supportedFiles,
             skippedFiles: inventory.skippedFiles,
@@ -179,7 +235,7 @@ export async function audit(cwd = process.cwd()) {
             totalChunks: 0,
         };
     }
-    const rows = (await table.query().limit(MAX_AUDIT_ROWS).toArray());
+    const rows = (await table.query().select(["relativePath", "checksum"]).toArray());
     const counts = new Map();
     const checksums = new Map();
     for (const row of rows) {
@@ -194,6 +250,9 @@ export async function audit(cwd = process.cwd()) {
     const indexedSet = new Set(counts.keys());
     const currentChecksums = new Map(files.map((file) => [file.relativePath, file.checksum]));
     return {
+        discoveredFiles: inventory.discoveredFiles,
+        supportedBytes: inventoryMetrics.supportedBytes,
+        largestFileBytes: inventoryMetrics.largestFileBytes,
         indexedFiles: [...counts.entries()]
             .sort(([a], [b]) => a.localeCompare(b))
             .map(([source, chunks]) => ({ source, chunks })),
@@ -216,6 +275,15 @@ export async function audit(cwd = process.cwd()) {
         totalChunks: rows.length,
     };
 }
+function sourceInventoryMetrics(files) {
+    let supportedBytes = 0;
+    let largestFileBytes = 0;
+    for (const file of files) {
+        supportedBytes += file.bytes;
+        largestFileBytes = Math.max(largestFileBytes, file.bytes);
+    }
+    return { supportedBytes, largestFileBytes };
+}
 function sourceDiagnostics(supportedFiles, skippedFiles) {
     const relativePaths = [
         ...supportedFiles.map((file) => file.relativePath),
@@ -229,17 +297,10 @@ function sourceDiagnostics(supportedFiles, skippedFiles) {
 }
 function duplicateCandidates(files) {
     const byChecksum = new Map();
-    const byLogicalName = new Map();
     for (const file of files) {
         appendGrouped(byChecksum, `sha256:${file.checksum.slice(0, 12)}`, file.relativePath);
-        const logicalName = normalizedLogicalName(file.relativePath);
-        if (logicalName.length >= 6) {
-            appendGrouped(byLogicalName, `name:${logicalName}`, file.relativePath);
-        }
     }
-    const exact = groupedDuplicates(byChecksum);
-    const logical = groupedDuplicates(byLogicalName).filter((candidate) => !exact.some((exactCandidate) => candidate.files.every((file) => exactCandidate.files.includes(file))));
-    return [...exact, ...logical]
+    return groupedDuplicates(byChecksum)
         .sort((a, b) => b.files.length - a.files.length || a.key.localeCompare(b.key))
         .slice(0, MAX_SOURCE_DIAGNOSTIC_ITEMS);
 }
@@ -260,9 +321,6 @@ function groupedDuplicates(groups) {
         .filter(([, files]) => files.length > 1)
         .map(([key, files]) => ({ key, files: [...new Set(files)].sort() }));
 }
-function normalizedLogicalName(relativePath) {
-    return normalizeForMatch(path.basename(relativePath, path.extname(relativePath))).replace(/[^a-z0-9]+/gu, "");
-}
 async function currentEmptyTextFiles(config, files) {
     const currentChecksums = new Map(files.map((file) => [file.relativePath, file.checksum]));
     const emptyTextFiles = new Set();

package/dist/ingest.js.map

@@ -1 +1 @@
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package/dist/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAMA,wBAAsB,WAAW,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAmCxE"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAOA,wBAAsB,WAAW,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CA8CxE"}

package/dist/init.js

@@ -1,27 +1,39 @@
 import { existsSync } from "node:fs";
-import { mkdir, writeFile } from "node:fs/promises";
+import { writeFile } from "node:fs/promises";
 import path from "node:path";
 import { CONFIG_PATH, DEFAULT_CONFIG, LEGACY_CONFIG_PATH, RAGMIR_DIR } from "./defaults.js";
 import { ensureRagmirGitignore } from "./gitignore.js";
+import { ensurePrivateDirectory, hardenPrivateFile } from "./permissions.js";
 export async function initProject(cwd = process.cwd()) {
     const root = path.resolve(cwd);
     const ragmirDir = path.join(root, RAGMIR_DIR);
     const rawDir = path.join(root, DEFAULT_CONFIG.rawDir);
     const created = [];
-    await mkdir(ragmirDir, { recursive: true });
+    await ensurePrivateDirectory(ragmirDir);
+    if (existsSync(rawDir)) {
+        await ensurePrivateDirectory(rawDir);
+    }
     const configPath = path.join(root, CONFIG_PATH);
     const legacyConfigPath = path.join(root, LEGACY_CONFIG_PATH);
     const hasConfig = existsSync(configPath);
     const hasLegacyConfig = existsSync(legacyConfigPath);
+    if (hasConfig) {
+        await hardenPrivateFile(configPath);
+    }
+    if (hasLegacyConfig) {
+        await hardenPrivateFile(legacyConfigPath);
+    }
     if (!hasConfig && !hasLegacyConfig) {
-        await mkdir(rawDir, { recursive: true });
+        await ensurePrivateDirectory(rawDir);
         await writeFile(configPath, `${JSON.stringify(DEFAULT_CONFIG, null, 2)}\n`, "utf8");
+        await hardenPrivateFile(configPath);
         created.push(path.relative(root, configPath));
     }
     if (!hasConfig && !hasLegacyConfig) {
         const readmePath = path.join(rawDir, "README.md");
         if (!existsSync(readmePath)) {
             await writeFile(readmePath, "# Ragmir raw documents\n\nPut local documents to ingest here. Keep this folder ignored by Git.\n", "utf8");
+            await hardenPrivateFile(readmePath);
             created.push(path.relative(root, readmePath));
         }
     }

package/dist/init.js.map

@@ -1 +1 @@
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