@jcode.labs/ragmir 2.6.0 → 2.8.0

package/dist/query.js

@@ -1,11 +1,17 @@
 import { recordAccess } from "./access-log.js";
 import { loadConfig } from "./config.js";
+import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
 import { embedText } from "./embeddings.js";
 import { getIndexFreshnessWarning } from "./index-diagnostics.js";
-import { openRowsTable } from "./store.js";
+import { sanitizeRetrievalQuery } from "./query-sanitizer.js";
+import { openRowsTable, readIndexManifest } from "./store.js";
 import { tokenize } from "./text.js";
-const MIN_VECTOR_CANDIDATES = 80;
-const VECTOR_CANDIDATE_MULTIPLIER = 4;
+const VECTOR_CANDIDATE_POLICY = {
+    fast: { minimum: 40, multiplier: 3, maxChunksPerSource: 1 },
+    balanced: { minimum: 80, multiplier: 4, maxChunksPerSource: 2 },
+    quality: { minimum: 200, multiplier: 8, maxChunksPerSource: 4 },
+    custom: { minimum: 80, multiplier: 4, maxChunksPerSource: 2 },
+};
 /**
  * Reciprocal Rank Fusion (Cormack et al. 2009). Each candidate scores
  * `weight / (RRF_K + rank)` per retriever it appears in, summed across
@@ -13,48 +19,152 @@ const VECTOR_CANDIDATE_MULTIPLIER = 4;
  * weighted-sum fusion: the BM25 and vector score distributions never need to
  * be normalized against each other.
  *
- * The retriever weights follow the weighted-RRF variant (as in Azure AI
- * Search). The vector retriever is weighted higher because, with the default
- * `local-hash` embeddings, vector proximity is the more discriminant signal
- * on small corpora; the lexical weight still lets exact-keyword evidence pull
- * in candidates the vector retriever missed.
+ * Equal weights let exact lexical evidence rescue a relevant document that is
+ * absent from the bounded vector candidate pool.
  */
 const RRF_K = 60;
-const RRF_VECTOR_WEIGHT = 0.7;
-const RRF_LEXICAL_WEIGHT = 0.3;
+const RRF_VECTOR_WEIGHT = 1;
+const RRF_LEXICAL_WEIGHT = 1;
 const BM25_K1 = 1.2;
 const BM25_B = 0.75;
+const MAX_CONTEXT_RADIUS = 3;
+const SEARCH_COLUMNS = [
+    "source",
+    "relativePath",
+    "chunkIndex",
+    "text",
+    "charStart",
+    "charEnd",
+    "lineStart",
+    "lineEnd",
+    "pageStart",
+    "pageEnd",
+];
+const VECTOR_SEARCH_COLUMNS = [...SEARCH_COLUMNS, "_distance"];
+const FTS_SEARCH_COLUMNS = [...SEARCH_COLUMNS, "_score"];
 export async function search(query, options = {}) {
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
     const table = await openRowsTable(config);
     if (!table) {
         return [];
     }
+    const sanitized = sanitizeRetrievalQuery(query);
+    const queryTokens = tokenize(sanitized.query);
+    if (!sanitized.query || queryTokens.length === 0) {
+        return [];
+    }
     const topK = options.topK ?? config.topK;
-    const vector = await embedText(query, config);
-    const vectorRows = (await table
-        .vectorSearch(vector)
-        .limit(vectorCandidateLimit(topK))
+    const pathPredicate = sourcePathPredicate(options.includePaths, options.excludePaths);
+    const [vector, textRows] = await Promise.all([
+        embedText(sanitized.query, config),
+        lexicalCandidateRows(table, sanitized.query, config.hybridTextScanLimit, pathPredicate),
+    ]);
+    await assertVectorIndexCompatibility(config, vector.length);
+    const vectorQuery = table.vectorSearch(vector).select(VECTOR_SEARCH_COLUMNS);
+    const vectorRows = (await (pathPredicate ? vectorQuery.where(pathPredicate) : vectorQuery)
+        .limit(vectorCandidateLimit(topK, config.retrievalProfile))
         .toArray());
-    const textRows = (await table.query().limit(config.hybridTextScanLimit).toArray());
-    const rows = rankHybridRows(query, vectorRows, textRows).slice(0, topK);
+    const rankedRows = rankHybridRows(sanitized.query, vectorRows, textRows);
+    const relevantRows = config.embeddingProvider === "local-hash"
+        ? rankedRows.filter((ranked) => hasLexicalOverlap(queryTokens, ranked.row.text))
+        : rankedRows;
+    const rows = diversifyRows(relevantRows, topK, config.retrievalProfile);
+    const defaultContextRadius = config.retrievalProfile === "quality" ? 1 : 0;
+    const contextByRow = await contextChunksByRow(table, rows, options.contextRadius ?? defaultContextRadius);
     const results = rows.map((row) => ({
         source: row.row.source,
         relativePath: row.row.relativePath,
         chunkIndex: row.row.chunkIndex,
+        citation: citationForRow(row.row),
         text: row.row.text,
         distance: typeof row.row._distance === "number" ? row.row._distance : null,
+        charStart: nullableNumber(row.row.charStart),
+        charEnd: nullableNumber(row.row.charEnd),
+        lineStart: nullableNumber(row.row.lineStart),
+        lineEnd: nullableNumber(row.row.lineEnd),
+        pageStart: nullablePageNumber(row.row.pageStart),
+        pageEnd: nullablePageNumber(row.row.pageEnd),
+        context: contextByRow.get(rowKey(row.row)) ?? [],
     }));
     await recordAccess(config, {
         action: "search",
-        query,
+        query: sanitized.query,
         topK,
         resultCount: results.length,
     });
     return results;
 }
-export function vectorCandidateLimit(topK) {
-    return Math.max(MIN_VECTOR_CANDIDATES, topK * VECTOR_CANDIDATE_MULTIPLIER);
+function diversifyRows(rows, topK, profile) {
+    const uniqueRows = [];
+    const textIndexes = new Map();
+    for (const row of rows) {
+        const textKey = row.row.text.replace(/\s+/gu, " ").trim().toLowerCase();
+        const existingIndex = textIndexes.get(textKey);
+        if (existingIndex === undefined) {
+            textIndexes.set(textKey, uniqueRows.length);
+            uniqueRows.push(row);
+            continue;
+        }
+        const existing = uniqueRows[existingIndex];
+        if (existing && preferCanonicalPath(row.row.relativePath, existing.row.relativePath)) {
+            uniqueRows[existingIndex] = row;
+        }
+    }
+    const selected = [];
+    const perSource = new Map();
+    const maxChunksPerSource = VECTOR_CANDIDATE_POLICY[profile].maxChunksPerSource;
+    for (const row of uniqueRows) {
+        if (selected.some((candidate) => overlapsSourceSpan(candidate.row, row.row))) {
+            continue;
+        }
+        const sourceCount = perSource.get(row.row.relativePath) ?? 0;
+        if (sourceCount >= maxChunksPerSource) {
+            continue;
+        }
+        selected.push(row);
+        perSource.set(row.row.relativePath, sourceCount + 1);
+        if (selected.length >= topK) {
+            break;
+        }
+    }
+    return selected;
+}
+function overlapsSourceSpan(left, right) {
+    if (left.relativePath !== right.relativePath) {
+        return false;
+    }
+    if (typeof left.charStart !== "number" ||
+        typeof left.charEnd !== "number" ||
+        typeof right.charStart !== "number" ||
+        typeof right.charEnd !== "number") {
+        return false;
+    }
+    return left.charStart < right.charEnd && right.charStart < left.charEnd;
+}
+function preferCanonicalPath(candidate, current) {
+    const candidateDepth = candidate.split("/").length;
+    const currentDepth = current.split("/").length;
+    return (candidateDepth < currentDepth ||
+        (candidateDepth === currentDepth && candidate.length < current.length));
+}
+function hasLexicalOverlap(queryTokens, text) {
+    const textTokens = tokenize(text);
+    return queryTokens.some((queryToken) => textTokens.some((textToken) => queryToken === textToken ||
+        (queryToken.length >= 4 &&
+            textToken.length >= 4 &&
+            sharedPrefixLength(queryToken, textToken) >= 4)));
+}
+function sharedPrefixLength(left, right) {
+    const limit = Math.min(left.length, right.length);
+    let index = 0;
+    while (index < limit && left[index] === right[index]) {
+        index += 1;
+    }
+    return index;
+}
+export function vectorCandidateLimit(topK, profile = "balanced") {
+    const policy = VECTOR_CANDIDATE_POLICY[profile];
+    return Math.max(policy.minimum, topK * policy.multiplier);
 }
 export async function ask(query, options = {}) {
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
@@ -69,7 +179,7 @@ export async function ask(query, options = {}) {
     }
     await recordAccess(config, {
         action: "ask",
-        query,
+        query: sanitizeRetrievalQuery(query).query,
         topK: options.topK ?? config.topK,
         resultCount: sources.length,
     });
@@ -82,8 +192,8 @@ export async function ask(query, options = {}) {
 function retrievalOnlyAnswer(sources) {
     const snippets = sources
         .map((source, index) => {
-        const text = source.text.replace(/\s+/gu, " ").trim();
-        return `[${index + 1}] ${source.relativePath}#${source.chunkIndex}: ${text}`;
+        const text = answerText(source).replace(/\s+/gu, " ").trim();
+        return `[${index + 1}] ${source.citation}: ${text}`;
     })
         .join("\n\n");
     return [
@@ -92,6 +202,110 @@ function retrievalOnlyAnswer(sources) {
         snippets,
     ].join("\n");
 }
+async function lexicalCandidateRows(table, query, limit, pathPredicate) {
+    const ftsQuery = lexicalQuery(query);
+    if (ftsQuery) {
+        try {
+            const searchQuery = table.search(ftsQuery, "fts", "text").select(FTS_SEARCH_COLUMNS);
+            return (await (pathPredicate ? searchQuery.where(pathPredicate) : searchQuery)
+                .limit(limit)
+                .toArray());
+        }
+        catch {
+            // Older indexes may not have the FTS index yet. Keep retrieval usable and
+            // let doctor/index freshness tell the operator to rebuild.
+        }
+    }
+    const fallbackQuery = table.query().select(SEARCH_COLUMNS);
+    return (await (pathPredicate ? fallbackQuery.where(pathPredicate) : fallbackQuery)
+        .limit(limit)
+        .toArray());
+}
+function sourcePathPredicate(includePaths, excludePaths) {
+    const includes = normalizePathPrefixes(includePaths);
+    const excludes = normalizePathPrefixes(excludePaths);
+    const clauses = [];
+    if (includes.length > 0) {
+        clauses.push(`(${includes.map(pathPrefixPredicate).join(" OR ")})`);
+    }
+    if (excludes.length > 0) {
+        clauses.push(`NOT (${excludes.map(pathPrefixPredicate).join(" OR ")})`);
+    }
+    return clauses.length === 0 ? null : clauses.join(" AND ");
+}
+function normalizePathPrefixes(prefixes) {
+    return [
+        ...new Set((prefixes ?? [])
+            .map((prefix) => prefix.trim().replaceAll("\\", "/").replace(/^\.\//u, ""))
+            .map((prefix) => prefix.replace(/\/+$/u, ""))
+            .filter(Boolean)),
+    ];
+}
+function pathPrefixPredicate(prefix) {
+    return `(relativePath = ${sqlString(prefix)} OR starts_with(relativePath, ${sqlString(`${prefix}/`)}))`;
+}
+async function contextChunksByRow(table, rows, requestedRadius) {
+    const radius = Math.min(MAX_CONTEXT_RADIUS, Math.max(0, requestedRadius));
+    if (radius === 0 || rows.length === 0) {
+        return new Map();
+    }
+    const predicates = rows.map(({ row }) => {
+        const minChunk = Math.max(0, row.chunkIndex - radius);
+        const maxChunk = row.chunkIndex + radius;
+        return `(relativePath = ${sqlString(row.relativePath)} AND chunkIndex >= ${minChunk} AND chunkIndex <= ${maxChunk})`;
+    });
+    const allContextRows = (await table
+        .query()
+        .select(SEARCH_COLUMNS)
+        .where(predicates.join(" OR "))
+        .toArray());
+    const contexts = new Map();
+    for (const { row } of rows) {
+        const minChunk = Math.max(0, row.chunkIndex - radius);
+        const maxChunk = row.chunkIndex + radius;
+        const contextRows = allContextRows.filter((candidate) => candidate.relativePath === row.relativePath &&
+            candidate.chunkIndex >= minChunk &&
+            candidate.chunkIndex <= maxChunk);
+        contexts.set(rowKey(row), contextRows.sort(compareChunkRows).map(contextChunkForRow));
+    }
+    return contexts;
+}
+async function assertVectorIndexCompatibility(config, vectorDimension) {
+    const manifest = await readIndexManifest(config);
+    if (!manifest) {
+        throw new Error("Index manifest is missing. Rebuild with `rgr ingest --rebuild` before searching.");
+    }
+    const freshnessWarning = await getIndexFreshnessWarning(config);
+    if (freshnessWarning) {
+        throw new Error(freshnessWarning);
+    }
+    if (manifest.vectorDimension !== undefined && manifest.vectorDimension !== vectorDimension) {
+        throw new Error(`Index vector dimension is ${manifest.vectorDimension} but the active embedding produced ${vectorDimension}. Rebuild with \`rgr ingest --rebuild\`.`);
+    }
+    if (manifest.vectorDistanceMetric !== undefined &&
+        manifest.vectorDistanceMetric !== VECTOR_DISTANCE_METRIC) {
+        throw new Error(`Index vector distance metric is ${manifest.vectorDistanceMetric} but Ragmir expects ${VECTOR_DISTANCE_METRIC}. Rebuild with \`rgr ingest --rebuild\`.`);
+    }
+}
+function answerText(source) {
+    if (source.context.length === 0) {
+        return source.text;
+    }
+    return source.context.map((chunk) => `[${chunk.citation}] ${chunk.text}`).join("\n\n");
+}
+function contextChunkForRow(row) {
+    return {
+        chunkIndex: row.chunkIndex,
+        text: row.text,
+        charStart: nullableNumber(row.charStart),
+        charEnd: nullableNumber(row.charEnd),
+        lineStart: nullableNumber(row.lineStart),
+        lineEnd: nullableNumber(row.lineEnd),
+        pageStart: nullablePageNumber(row.pageStart),
+        pageEnd: nullablePageNumber(row.pageEnd),
+        citation: citationForRow(row),
+    };
+}
 /**
  * Reciprocal Rank Fusion of vector and lexical retrievers. Rank-only: each
  * candidate scores `1/(RRF_K + rank)` per retriever it appears in, summed.
@@ -113,13 +327,18 @@ function rankHybridRows(query, vectorRows, textRows) {
     vectorRanked.forEach((row, index) => {
         vectorRanks.set(rowKey(row), index);
     });
-    // Lexical ranks: higher BM25 score is better, so sort descending.
-    const lexicalScores = bm25Scores(queryTokens, rows);
-    const lexicalRanked = [...lexicalScores.entries()]
-        .filter(([, score]) => score > 0)
-        .sort((a, b) => b[1] - a[1]);
+    // LanceDB FTS already returns BM25-ranked rows. The fallback scan computes
+    // BM25 locally when an older index has no text index.
+    const ftsRows = textRows.filter((row) => typeof row._score === "number");
+    const lexicalRanked = ftsRows.length > 0
+        ? ftsRows
+            .sort((a, b) => (b._score ?? 0) - (a._score ?? 0))
+            .map((row) => [rowKey(row), row._score ?? 0])
+        : [...bm25Scores(queryTokens, rows).entries()]
+            .filter(([, score]) => score > 0)
+            .sort((a, b) => b[1] - a[1]);
     const lexicalRanks = new Map();
-    lexicalRanked.forEach(([key, index]) => {
+    lexicalRanked.forEach(([key], index) => {
         lexicalRanks.set(key, index);
     });
     return rows
@@ -159,7 +378,16 @@ function mergeRows(vectorRows, textRows) {
         rows.set(rowKey(row), row);
     }
     for (const row of vectorRows) {
-        rows.set(rowKey(row), row);
+        const existing = rows.get(rowKey(row));
+        if (!existing) {
+            rows.set(rowKey(row), row);
+            continue;
+        }
+        const merged = { ...existing, ...row };
+        if (existing._score !== undefined) {
+            merged._score = existing._score;
+        }
+        rows.set(rowKey(row), merged);
     }
     return [...rows.values()];
 }
@@ -208,4 +436,32 @@ function rowDistance(row) {
 function rowKey(row) {
     return `${row.relativePath}\0${row.chunkIndex}`;
 }
+function citationForRow(row) {
+    const lineStart = nullableNumber(row.lineStart);
+    const lineEnd = nullableNumber(row.lineEnd);
+    const pageStart = nullablePageNumber(row.pageStart);
+    const pageEnd = nullablePageNumber(row.pageEnd);
+    const pageSegment = pageStart === null
+        ? ""
+        : `:p${pageStart}${pageEnd !== null && pageEnd !== pageStart ? `-p${pageEnd}` : ""}`;
+    if (lineStart === null || lineEnd === null) {
+        return `${row.relativePath}${pageSegment}#${row.chunkIndex}`;
+    }
+    return `${row.relativePath}${pageSegment}:L${lineStart}-L${lineEnd}#${row.chunkIndex}`;
+}
+function lexicalQuery(query) {
+    return [...new Set(tokenize(query))].join(" ");
+}
+function compareChunkRows(a, b) {
+    return a.chunkIndex - b.chunkIndex;
+}
+function nullableNumber(value) {
+    return typeof value === "number" && Number.isFinite(value) ? value : null;
+}
+function nullablePageNumber(value) {
+    return typeof value === "number" && Number.isInteger(value) && value > 0 ? value : null;
+}
+function sqlString(value) {
+    return `'${value.replaceAll("'", "''")}'`;
+}
 //# sourceMappingURL=query.js.map

package/dist/query.js.map

@@ -1 +1 @@
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package/dist/research.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"research.d.ts","sourceRoot":"","sources":["../src/research.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAEV,mBAAmB,EAEnB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACb,MAAM,YAAY,CAAA;AAwDnB,wBAAsB,QAAQ,CAC5B,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,eAAoB,GAC5B,OAAO,CAAC,cAAc,CAAC,CAsEzB;AAED,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,YAAY,EAAE,EACvB,SAAS,SAAyB,GACjC,mBAAmB,EAAE,CAQvB;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,cAAc,GAAG,IAAI,CAAC,cAAc,EAAE,UAAU,CAAC,GAAG;IAChG,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,EAAE,MAAM,CAAC,GAAG;QAAE,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAA;CACtE,CAYA"}
+{"version":3,"file":"research.d.ts","sourceRoot":"","sources":["../src/research.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAEV,mBAAmB,EAEnB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACb,MAAM,YAAY,CAAA;AAwDnB,wBAAsB,QAAQ,CAC5B,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,eAAoB,GAC5B,OAAO,CAAC,cAAc,CAAC,CAmFzB;AAED,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,YAAY,EAAE,EACvB,SAAS,SAAyB,GACjC,mBAAmB,EAAE,CAavB;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,cAAc,GAAG,IAAI,CAAC,cAAc,EAAE,UAAU,CAAC,GAAG;IAChG,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,EAAE,MAAM,CAAC,GAAG;QAAE,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAA;CACtE,CAiBA"}

package/dist/research.js

@@ -74,24 +74,33 @@ export async function research(query, options = {}) {
         securityAudit(config.projectRoot),
     ]);
     const generatedQueries = researchQueries(normalizedQuery);
+    const includeCode = config.privacyProfile === "strict" ? false : options.includeCode !== false;
     const perQueryTopK = Math.max(2, Math.ceil(topK / 2));
     const searchResults = await Promise.all(generatedQueries.map(async (generatedQuery) => ({
         query: generatedQuery,
-        results: await search(generatedQuery, { cwd: config.projectRoot, topK: perQueryTopK }),
+        results: await search(generatedQuery, {
+            cwd: config.projectRoot,
+            topK: perQueryTopK,
+            ...(options.includePaths ? { includePaths: options.includePaths } : {}),
+            ...(options.excludePaths ? { excludePaths: options.excludePaths } : {}),
+        }),
     })));
     const evidence = mergeEvidence(searchResults).slice(0, topK);
-    const codeEvidence = options.includeCode === false
+    const codeEvidence = !includeCode
         ? []
         : await findCodeEvidence(config, normalizedQuery, DEFAULT_CODE_EVIDENCE_LIMIT);
     const unsupportedFiles = countSkippedByReason(auditReport.skippedFiles, "unsupported-extension");
+    const oversizedFiles = countSkippedByReason(auditReport.skippedFiles, "oversized");
     const gaps = researchGaps({
         evidenceCount: evidence.length,
         codeEvidenceCount: codeEvidence.length,
-        includeCode: options.includeCode !== false,
+        includeCode,
         missingFromIndex: auditReport.missingFromIndex.length,
         staleInIndex: auditReport.staleInIndex.length,
+        emptyTextFiles: auditReport.emptyTextFiles.length,
         securityWarnings: securityReport.warnings.length,
         unsupportedFiles,
+        oversizedFiles,
         duplicateCandidates: auditReport.sourceDiagnostics.duplicateCandidates.length,
         archiveCandidates: auditReport.sourceDiagnostics.archiveCandidates.length,
         mirrorCandidates: auditReport.sourceDiagnostics.mirrorCandidates.length,
@@ -108,11 +117,16 @@ export async function research(query, options = {}) {
         ready: evidence.length > 0 &&
             auditReport.missingFromIndex.length === 0 &&
             auditReport.staleInIndex.length === 0 &&
+            auditReport.emptyTextFiles.length === 0 &&
+            oversizedFiles === 0 &&
             securityReport.warnings.length === 0,
         audit: {
             supportedFiles: auditReport.supportedFiles.length,
+            supportedBytes: auditReport.supportedBytes,
+            largestFileBytes: auditReport.largestFileBytes,
             skippedFiles: auditReport.skippedFiles.length,
             unsupportedFiles,
+            oversizedFiles,
             indexedFiles: auditReport.indexedFiles.length,
             totalChunks: auditReport.totalChunks,
             missingFromIndex: auditReport.missingFromIndex.length,
@@ -132,8 +146,13 @@ export function compactSearchResults(results, maxLength = COMPACT_SNIPPET_LENGTH
         source: result.source,
         relativePath: result.relativePath,
         chunkIndex: result.chunkIndex,
+        citation: result.citation,
         snippet: compactText(result.text, maxLength),
         distance: result.distance,
+        lineStart: result.lineStart,
+        lineEnd: result.lineEnd,
+        pageStart: result.pageStart,
+        pageEnd: result.pageEnd,
     }));
 }
 export function compactResearchReport(report) {
@@ -143,8 +162,13 @@ export function compactResearchReport(report) {
             source: evidence.source,
             relativePath: evidence.relativePath,
             chunkIndex: evidence.chunkIndex,
+            citation: evidence.citation,
             snippet: compactText(evidence.text),
             distance: evidence.distance,
+            lineStart: evidence.lineStart,
+            lineEnd: evidence.lineEnd,
+            pageStart: evidence.pageStart,
+            pageEnd: evidence.pageEnd,
             queries: evidence.queries,
         })),
     };
@@ -174,8 +198,13 @@ function mergeEvidence(searchResults) {
                 source: result.source,
                 relativePath: result.relativePath,
                 chunkIndex: result.chunkIndex,
+                citation: result.citation,
                 text: result.text,
                 distance: result.distance,
+                lineStart: result.lineStart,
+                lineEnd: result.lineEnd,
+                pageStart: result.pageStart,
+                pageEnd: result.pageEnd,
                 queries: [searchResult.query],
             });
         }
@@ -273,12 +302,18 @@ function researchGaps(input) {
     if (input.staleInIndex > 0) {
         gaps.push(`${input.staleInIndex} indexed source files are stale.`);
     }
+    if (input.emptyTextFiles > 0) {
+        gaps.push(`${input.emptyTextFiles} supported source files produced no indexable text.`);
+    }
     if (input.securityWarnings > 0) {
         gaps.push(`${input.securityWarnings} security warnings require review.`);
     }
     if (input.unsupportedFiles > 0) {
         gaps.push(`${input.unsupportedFiles} source files were skipped because their type is unsupported.`);
     }
+    if (input.oversizedFiles > 0) {
+        gaps.push(`${input.oversizedFiles} source files exceeded maxFileBytes and were skipped.`);
+    }
     if (input.duplicateCandidates > 0) {
         gaps.push(`${input.duplicateCandidates} possible duplicate source groups need source-truth review.`);
     }
@@ -298,9 +333,12 @@ function researchNextSteps(gaps) {
         if (gap.includes("missing") || gap.includes("stale")) {
             return "Run `rgr doctor --fix`, then rerun `rgr research`.";
         }
-        if (gap.includes("unsupported")) {
+        if (gap.includes("unsupported") || gap.includes("maxFileBytes")) {
             return "Run `rgr audit --unsupported` and transcribe, OCR, convert, or explicitly configure unsupported formats.";
         }
+        if (gap.includes("indexable text")) {
+            return "Configure local OCR, convert the affected files, or add extracted text, then re-ingest.";
+        }
         if (gap.includes("duplicate") || gap.includes("archive") || gap.includes("mirror")) {
             return "Review source diagnostics and prefer the canonical source before presenting conclusions.";
         }

package/dist/research.js.map

@@ -1 +1 @@
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package/dist/security.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"security.d.ts","sourceRoot":"","sources":["../src/security.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAErD,wBAAsB,aAAa,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,mBAAmB,CAAC,CAgFrF"}
+{"version":3,"file":"security.d.ts","sourceRoot":"","sources":["../src/security.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAErD,wBAAsB,aAAa,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,mBAAmB,CAAC,CA6HrF"}