@jcode.labs/ragmir 2.6.0 → 2.8.0

package/dist/ingest.js

@@ -1,16 +1,15 @@
-import path from "node:path";
 import { recordAccess } from "./access-log.js";
 import { chunkDocument } from "./chunking.js";
 import { loadConfig } from "./config.js";
+import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
 import { embedTexts } from "./embeddings.js";
 import { countSkippedByReason, inventorySourceFiles, summarizeUnsupportedExtensions, } from "./files.js";
 import { INDEX_SCHEMA_VERSION } from "./index-diagnostics.js";
+import { indexPolicyFingerprint } from "./index-policy.js";
 import { parseFile } from "./parsing.js";
 import { redactText, totalRedactions } from "./redaction.js";
-import { openRowsTable, readEmptyTextFiles, readRows, writeEmptyTextFiles, writeIndexManifest, writeRows, } from "./store.js";
-import { normalizeForMatch } from "./text.js";
+import { openRowsTable, readEmptyTextFiles, readIndexManifest, updateRows, writeEmptyTextFiles, writeIndexManifest, writeRows, } from "./store.js";
 import { VERSION } from "./version.js";
-const MAX_AUDIT_ROWS = 100_000;
 const MAX_SOURCE_DIAGNOSTIC_ITEMS = 20;
 const ARCHIVE_PATH_PATTERNS = [
     /(^|[/_-])archive(s)?([/_-]|$)/iu,
@@ -28,15 +27,36 @@ const MIRROR_PATH_PATTERNS = [
 ];
 export async function ingest(options = {}) {
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
-    const inventory = await inventorySourceFiles(config);
+    const policyFingerprint = indexPolicyFingerprint(config);
+    const existingManifest = await readIndexManifest(config);
+    const manifestCompatible = !options.rebuild &&
+        existingManifest?.schemaVersion === INDEX_SCHEMA_VERSION &&
+        existingManifest.indexPolicyFingerprint === policyFingerprint &&
+        existingManifest.indexedFiles !== undefined;
+    const existingTable = manifestCompatible ? await openRowsTable(config) : null;
+    const storedEmptyFiles = manifestCompatible ? await readEmptyTextFiles(config) : [];
+    const knownFiles = new Map([...(existingManifest?.indexedFiles ?? []), ...storedEmptyFiles].map((file) => [
+        file.relativePath,
+        file,
+    ]));
+    const inventory = await inventorySourceFiles(config, { knownFiles });
     const files = inventory.supportedFiles;
+    const inventoryMetrics = sourceInventoryMetrics(files);
     const currentFiles = new Map(files.map((file) => [file.relativePath, file]));
-    const existingRows = options.rebuild ? [] : await readRows(config);
-    const reusableRows = options.rebuild ? [] : reusableIndexRows(existingRows, currentFiles, config);
-    const reusableFiles = new Set(reusableRows.map((row) => row.relativePath));
-    const filesToIndex = options.rebuild
-        ? files
-        : files.filter((file) => !reusableFiles.has(file.relativePath));
+    const policyRebuild = !options.rebuild &&
+        existingManifest !== null &&
+        (existingManifest.schemaVersion !== INDEX_SCHEMA_VERSION ||
+            existingManifest.indexPolicyFingerprint !== policyFingerprint);
+    const canReuse = manifestCompatible && existingTable !== null;
+    const previousIndexedFiles = canReuse ? (existingManifest.indexedFiles ?? []) : [];
+    const previousEmptyFiles = canReuse ? storedEmptyFiles : [];
+    const reusableIndexedFiles = previousIndexedFiles.filter((file) => currentFiles.get(file.relativePath)?.checksum === file.checksum);
+    const reusableEmptyFiles = previousEmptyFiles.filter((file) => currentFiles.get(file.relativePath)?.checksum === file.checksum);
+    const reusableFiles = new Set([
+        ...reusableIndexedFiles.map((file) => file.relativePath),
+        ...reusableEmptyFiles.map((file) => file.relativePath),
+    ]);
+    const filesToIndex = files.filter((file) => !reusableFiles.has(file.relativePath));
     const allChunks = [];
     const errors = [];
     const redactionCounts = [];
@@ -88,78 +108,122 @@ export async function ingest(options = {}) {
             });
         }
     }
-    const indexRows = [...reusableRows, ...rows];
-    const writeResult = await writeRows(indexRows, config);
-    if (indexRows.length > 0) {
+    const rebuiltIndexedFiles = indexedFileRecords(rows);
+    const indexedFiles = [...reusableIndexedFiles, ...rebuiltIndexedFiles].sort((a, b) => a.relativePath.localeCompare(b.relativePath));
+    const chunkCount = indexedFiles.reduce((sum, file) => sum + file.chunkCount, 0);
+    const previousPaths = new Set(previousIndexedFiles.map((file) => file.relativePath));
+    const currentPaths = new Set(files.map((file) => file.relativePath));
+    const replacePaths = [
+        ...filesToIndex.map((file) => file.relativePath),
+        ...[...previousPaths].filter((relativePath) => !currentPaths.has(relativePath)),
+    ];
+    const writeResult = !canReuse || chunkCount === 0
+        ? await writeRows(rows, config)
+        : replacePaths.length > 0
+            ? await updateRows(rows, replacePaths, config)
+            : { vectorIndexWarning: null, lexicalIndexWarning: null };
+    if (chunkCount > 0) {
+        const firstRow = rows[0] ?? (await firstStoredRow(config));
+        if (!firstRow) {
+            throw new Error("Cannot write an index manifest without indexed rows.");
+        }
         await writeIndexManifest({
             schemaVersion: INDEX_SCHEMA_VERSION,
             createdAt: new Date().toISOString(),
             ragmirVersion: VERSION,
             embeddingProvider: config.embeddingProvider,
             embeddingModel: config.embeddingModel,
+            indexPolicyFingerprint: policyFingerprint,
+            vectorDimension: firstRow.vector.length,
+            vectorDistanceMetric: VECTOR_DISTANCE_METRIC,
             chunkSize: config.chunkSize,
             chunkOverlap: config.chunkOverlap,
-            fileCount: new Set(indexRows.map((row) => row.relativePath)).size,
-            chunkCount: indexRows.length,
+            fileCount: indexedFiles.length,
+            chunkCount,
+            indexedFiles,
         }, config);
     }
-    await writeEmptyTextFiles(emptyTextFiles.flatMap((relativePath) => {
-        const file = currentFiles.get(relativePath);
-        return file ? [{ relativePath, checksum: file.checksum }] : [];
-    }), config);
+    await writeEmptyTextFiles([
+        ...reusableEmptyFiles,
+        ...emptyTextFiles.flatMap((relativePath) => {
+            const file = currentFiles.get(relativePath);
+            return file
+                ? [
+                    {
+                        relativePath,
+                        checksum: file.checksum,
+                        bytes: file.bytes,
+                        mtimeMs: file.mtimeMs,
+                    },
+                ]
+                : [];
+        }),
+    ], config);
     await recordAccess(config, {
         action: "ingest",
-        resultCount: indexRows.length,
+        resultCount: chunkCount,
         redactions: totalRedactions(redactionCounts),
     });
     return {
-        indexedFiles: new Set(indexRows.map((row) => row.relativePath)).size,
+        indexedFiles: indexedFiles.length,
         rebuiltFiles: new Set(rows.map((row) => row.relativePath)).size,
         reusedFiles: reusableFiles.size,
-        chunks: indexRows.length,
+        policyRebuild,
+        chunks: chunkCount,
         discoveredFiles: inventory.discoveredFiles,
         supportedFiles: files.length,
+        supportedBytes: inventoryMetrics.supportedBytes,
+        largestFileBytes: inventoryMetrics.largestFileBytes,
         skippedFiles: inventory.skippedFiles.length + emptyTextFiles.length,
         unsupportedFiles: countSkippedByReason(inventory.skippedFiles, "unsupported-extension"),
         oversizedFiles: countSkippedByReason(inventory.skippedFiles, "oversized"),
         sensitiveFiles: countSkippedByReason(inventory.skippedFiles, "sensitive-name"),
-        emptyTextFiles,
+        emptyTextFiles: [
+            ...reusableEmptyFiles.map((file) => file.relativePath),
+            ...emptyTextFiles,
+        ].sort(),
         unsupportedExtensions: summarizeUnsupportedExtensions(inventory.skippedFiles),
         redactions: totalRedactions(redactionCounts),
         vectorIndexWarning: writeResult.vectorIndexWarning,
+        lexicalIndexWarning: writeResult.lexicalIndexWarning,
         errors,
     };
 }
-function reusableIndexRows(rows, currentFiles, config) {
-    const rowsByFile = new Map();
+function indexedFileRecords(rows) {
+    const records = new Map();
     for (const row of rows) {
-        const fileRows = rowsByFile.get(row.relativePath) ?? [];
-        fileRows.push(row);
-        rowsByFile.set(row.relativePath, fileRows);
+        const current = records.get(row.relativePath);
+        records.set(row.relativePath, {
+            relativePath: row.relativePath,
+            checksum: row.checksum,
+            chunkCount: (current?.chunkCount ?? 0) + 1,
+            bytes: row.bytes,
+            mtimeMs: row.mtimeMs,
+        });
     }
-    const reusableRows = [];
-    for (const [relativePath, fileRows] of rowsByFile) {
-        const file = currentFiles.get(relativePath);
-        if (!file) {
-            continue;
-        }
-        if (fileRows.every((row) => row.checksum === file.checksum &&
-            row.embeddingProvider === config.embeddingProvider &&
-            row.embeddingModel === config.embeddingModel)) {
-            reusableRows.push(...fileRows);
-        }
+    return [...records.values()];
+}
+async function firstStoredRow(config) {
+    const table = await openRowsTable(config);
+    if (!table) {
+        return null;
     }
-    return reusableRows;
+    const [row] = (await table.query().limit(1).toArray());
+    return row ?? null;
 }
 export async function audit(cwd = process.cwd()) {
     const config = await loadConfig(cwd);
     const inventory = await inventorySourceFiles(config);
     const files = inventory.supportedFiles;
+    const inventoryMetrics = sourceInventoryMetrics(files);
     const supportedFiles = files.map((file) => file.relativePath);
     const table = await openRowsTable(config);
     const emptyTextFiles = await currentEmptyTextFiles(config, files);
     if (!table) {
         return {
+            discoveredFiles: inventory.discoveredFiles,
+            supportedBytes: inventoryMetrics.supportedBytes,
+            largestFileBytes: inventoryMetrics.largestFileBytes,
             indexedFiles: [],
             supportedFiles,
             skippedFiles: inventory.skippedFiles,
@@ -171,7 +235,7 @@ export async function audit(cwd = process.cwd()) {
             totalChunks: 0,
         };
     }
-    const rows = (await table.query().limit(MAX_AUDIT_ROWS).toArray());
+    const rows = (await table.query().select(["relativePath", "checksum"]).toArray());
     const counts = new Map();
     const checksums = new Map();
     for (const row of rows) {
@@ -186,6 +250,9 @@ export async function audit(cwd = process.cwd()) {
     const indexedSet = new Set(counts.keys());
     const currentChecksums = new Map(files.map((file) => [file.relativePath, file.checksum]));
     return {
+        discoveredFiles: inventory.discoveredFiles,
+        supportedBytes: inventoryMetrics.supportedBytes,
+        largestFileBytes: inventoryMetrics.largestFileBytes,
         indexedFiles: [...counts.entries()]
             .sort(([a], [b]) => a.localeCompare(b))
             .map(([source, chunks]) => ({ source, chunks })),
@@ -208,6 +275,15 @@ export async function audit(cwd = process.cwd()) {
         totalChunks: rows.length,
     };
 }
+function sourceInventoryMetrics(files) {
+    let supportedBytes = 0;
+    let largestFileBytes = 0;
+    for (const file of files) {
+        supportedBytes += file.bytes;
+        largestFileBytes = Math.max(largestFileBytes, file.bytes);
+    }
+    return { supportedBytes, largestFileBytes };
+}
 function sourceDiagnostics(supportedFiles, skippedFiles) {
     const relativePaths = [
         ...supportedFiles.map((file) => file.relativePath),
@@ -221,17 +297,10 @@ function sourceDiagnostics(supportedFiles, skippedFiles) {
 }
 function duplicateCandidates(files) {
     const byChecksum = new Map();
-    const byLogicalName = new Map();
     for (const file of files) {
         appendGrouped(byChecksum, `sha256:${file.checksum.slice(0, 12)}`, file.relativePath);
-        const logicalName = normalizedLogicalName(file.relativePath);
-        if (logicalName.length >= 6) {
-            appendGrouped(byLogicalName, `name:${logicalName}`, file.relativePath);
-        }
     }
-    const exact = groupedDuplicates(byChecksum);
-    const logical = groupedDuplicates(byLogicalName).filter((candidate) => !exact.some((exactCandidate) => candidate.files.every((file) => exactCandidate.files.includes(file))));
-    return [...exact, ...logical]
+    return groupedDuplicates(byChecksum)
         .sort((a, b) => b.files.length - a.files.length || a.key.localeCompare(b.key))
         .slice(0, MAX_SOURCE_DIAGNOSTIC_ITEMS);
 }
@@ -252,9 +321,6 @@ function groupedDuplicates(groups) {
         .filter(([, files]) => files.length > 1)
         .map(([key, files]) => ({ key, files: [...new Set(files)].sort() }));
 }
-function normalizedLogicalName(relativePath) {
-    return normalizeForMatch(path.basename(relativePath, path.extname(relativePath))).replace(/[^a-z0-9]+/gu, "");
-}
 async function currentEmptyTextFiles(config, files) {
     const currentChecksums = new Map(files.map((file) => [file.relativePath, file.checksum]));
     const emptyTextFiles = new Set();

package/dist/ingest.js.map

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package/dist/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAMA,wBAAsB,WAAW,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAmCxE"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAOA,wBAAsB,WAAW,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CA8CxE"}

package/dist/init.js

@@ -1,27 +1,39 @@
 import { existsSync } from "node:fs";
-import { mkdir, writeFile } from "node:fs/promises";
+import { writeFile } from "node:fs/promises";
 import path from "node:path";
 import { CONFIG_PATH, DEFAULT_CONFIG, LEGACY_CONFIG_PATH, RAGMIR_DIR } from "./defaults.js";
 import { ensureRagmirGitignore } from "./gitignore.js";
+import { ensurePrivateDirectory, hardenPrivateFile } from "./permissions.js";
 export async function initProject(cwd = process.cwd()) {
     const root = path.resolve(cwd);
     const ragmirDir = path.join(root, RAGMIR_DIR);
     const rawDir = path.join(root, DEFAULT_CONFIG.rawDir);
     const created = [];
-    await mkdir(ragmirDir, { recursive: true });
+    await ensurePrivateDirectory(ragmirDir);
+    if (existsSync(rawDir)) {
+        await ensurePrivateDirectory(rawDir);
+    }
     const configPath = path.join(root, CONFIG_PATH);
     const legacyConfigPath = path.join(root, LEGACY_CONFIG_PATH);
     const hasConfig = existsSync(configPath);
     const hasLegacyConfig = existsSync(legacyConfigPath);
+    if (hasConfig) {
+        await hardenPrivateFile(configPath);
+    }
+    if (hasLegacyConfig) {
+        await hardenPrivateFile(legacyConfigPath);
+    }
     if (!hasConfig && !hasLegacyConfig) {
-        await mkdir(rawDir, { recursive: true });
+        await ensurePrivateDirectory(rawDir);
         await writeFile(configPath, `${JSON.stringify(DEFAULT_CONFIG, null, 2)}\n`, "utf8");
+        await hardenPrivateFile(configPath);
         created.push(path.relative(root, configPath));
     }
     if (!hasConfig && !hasLegacyConfig) {
         const readmePath = path.join(rawDir, "README.md");
         if (!existsSync(readmePath)) {
             await writeFile(readmePath, "# Ragmir raw documents\n\nPut local documents to ingest here. Keep this folder ignored by Git.\n", "utf8");
+            await hardenPrivateFile(readmePath);
             created.push(path.relative(root, readmePath));
         }
     }

package/dist/init.js.map

@@ -1 +1 @@
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+{"version":3,"file":"init.js","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAA;AACpC,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAA;AAC5C,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,kBAAkB,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC3F,OAAO,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AAE5E,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE;IACnD,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;IAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,UAAU,CAAC,CAAA;IAC7C,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,cAAc,CAAC,MAAM,CAAC,CAAA;IACrD,MAAM,OAAO,GAAa,EAAE,CAAA;IAE5B,MAAM,sBAAsB,CAAC,SAAS,CAAC,CAAA;IACvC,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACvB,MAAM,sBAAsB,CAAC,MAAM,CAAC,CAAA;IACtC,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,CAAC,CAAA;IAC/C,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;IAC5D,MAAM,SAAS,GAAG,UAAU,CAAC,UAAU,CAAC,CAAA;IACxC,MAAM,eAAe,GAAG,UAAU,CAAC,gBAAgB,CAAC,CAAA;IACpD,IAAI,SAAS,EAAE,CAAC;QACd,MAAM,iBAAiB,CAAC,UAAU,CAAC,CAAA;IACrC,CAAC;IACD,IAAI,eAAe,EAAE,CAAC;QACpB,MAAM,iBAAiB,CAAC,gBAAgB,CAAC,CAAA;IAC3C,CAAC;IACD,IAAI,CAAC,SAAS,IAAI,CAAC,eAAe,EAAE,CAAC;QACnC,MAAM,sBAAsB,CAAC,MAAM,CAAC,CAAA;QACpC,MAAM,SAAS,CAAC,UAAU,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,cAAc,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;QACnF,MAAM,iBAAiB,CAAC,UAAU,CAAC,CAAA;QACnC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC,CAAA;IAC/C,CAAC;IAED,IAAI,CAAC,SAAS,IAAI,CAAC,eAAe,EAAE,CAAC;QACnC,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,WAAW,CAAC,CAAA;QACjD,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;YAC5B,MAAM,SAAS,CACb,UAAU,EACV,kGAAkG,EAClG,MAAM,CACP,CAAA;YACD,MAAM,iBAAiB,CAAC,UAAU,CAAC,CAAA;YACnC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC,CAAA;QAC/C,CAAC;IACH,CAAC;IAED,IAAI,MAAM,qBAAqB,CAAC,IAAI,CAAC,EAAE,CAAC;QACtC,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IAC5B,CAAC;IAED,OAAO,OAAO,CAAA;AAChB,CAAC"}

package/dist/limits.d.ts

@@ -0,0 +1,9 @@
+import type { Config, IngestionLimitsReport } from "./types.js";
+export declare const MAX_OFFICE_XML_ENTRY_BYTES = 25000000;
+export declare const MAX_OFFICE_TEXT_ENTRY_COUNT = 512;
+export declare const MAX_OFFICE_XML_TOTAL_BYTES = 50000000;
+export declare const MAX_EXTERNAL_TEXT_STDIO_BYTES = 25000000;
+export declare const MAX_PDF_PAGES = 1000;
+export declare const MAX_PDF_TEXT_CHARACTERS = 25000000;
+export declare function ingestionLimits(config: Pick<Config, "maxFileBytes">): IngestionLimitsReport;
+//# sourceMappingURL=limits.d.ts.map

package/dist/limits.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"limits.d.ts","sourceRoot":"","sources":["../src/limits.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAA;AAE/D,eAAO,MAAM,0BAA0B,WAAa,CAAA;AACpD,eAAO,MAAM,2BAA2B,MAAM,CAAA;AAC9C,eAAO,MAAM,0BAA0B,WAAa,CAAA;AACpD,eAAO,MAAM,6BAA6B,WAAa,CAAA;AACvD,eAAO,MAAM,aAAa,OAAQ,CAAA;AAClC,eAAO,MAAM,uBAAuB,WAAa,CAAA;AAEjD,wBAAgB,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,cAAc,CAAC,GAAG,qBAAqB,CAiB3F"}

package/dist/limits.js

@@ -0,0 +1,25 @@
+export const MAX_OFFICE_XML_ENTRY_BYTES = 25_000_000;
+export const MAX_OFFICE_TEXT_ENTRY_COUNT = 512;
+export const MAX_OFFICE_XML_TOTAL_BYTES = 50_000_000;
+export const MAX_EXTERNAL_TEXT_STDIO_BYTES = 25_000_000;
+export const MAX_PDF_PAGES = 1_000;
+export const MAX_PDF_TEXT_CHARACTERS = 25_000_000;
+export function ingestionLimits(config) {
+    return {
+        maxFileBytes: config.maxFileBytes,
+        maxFiles: null,
+        maxCorpusBytes: null,
+        maxPdfPages: MAX_PDF_PAGES,
+        maxPdfTextCharacters: MAX_PDF_TEXT_CHARACTERS,
+        maxOfficeTextEntries: MAX_OFFICE_TEXT_ENTRY_COUNT,
+        maxOfficeEntryBytes: MAX_OFFICE_XML_ENTRY_BYTES,
+        maxOfficeTotalTextBytes: MAX_OFFICE_XML_TOTAL_BYTES,
+        maxExternalTextOutputBytes: MAX_EXTERNAL_TEXT_STDIO_BYTES,
+        notes: [
+            "Ragmir has no hard file-count or total-corpus-size limit; available disk, memory, embedding throughput, and exact-search latency are the practical constraints.",
+            "Files larger than maxFileBytes are skipped before parsing and reported by ingest, audit, and doctor.",
+            "PDF, Office/archive, and external extractor limits are hard safety blocks and surface as ingestion errors.",
+        ],
+    };
+}
+//# sourceMappingURL=limits.js.map

package/dist/limits.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"limits.js","sourceRoot":"","sources":["../src/limits.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,0BAA0B,GAAG,UAAU,CAAA;AACpD,MAAM,CAAC,MAAM,2BAA2B,GAAG,GAAG,CAAA;AAC9C,MAAM,CAAC,MAAM,0BAA0B,GAAG,UAAU,CAAA;AACpD,MAAM,CAAC,MAAM,6BAA6B,GAAG,UAAU,CAAA;AACvD,MAAM,CAAC,MAAM,aAAa,GAAG,KAAK,CAAA;AAClC,MAAM,CAAC,MAAM,uBAAuB,GAAG,UAAU,CAAA;AAEjD,MAAM,UAAU,eAAe,CAAC,MAAoC;IAClE,OAAO;QACL,YAAY,EAAE,MAAM,CAAC,YAAY;QACjC,QAAQ,EAAE,IAAI;QACd,cAAc,EAAE,IAAI;QACpB,WAAW,EAAE,aAAa;QAC1B,oBAAoB,EAAE,uBAAuB;QAC7C,oBAAoB,EAAE,2BAA2B;QACjD,mBAAmB,EAAE,0BAA0B;QAC/C,uBAAuB,EAAE,0BAA0B;QACnD,0BAA0B,EAAE,6BAA6B;QACzD,KAAK,EAAE;YACL,iKAAiK;YACjK,sGAAsG;YACtG,4GAA4G;SAC7G;KACF,CAAA;AACH,CAAC"}

package/dist/mcp.d.ts

@@ -1,8 +1,11 @@
 export declare function serveMcp(cwd?: string): Promise<void>;
 export declare function resolveMcpProjectRoot(env?: NodeJS.ProcessEnv, fallback?: string): string;
-export declare function searchOptions(cwd: string, topK: number | undefined): Promise<{
+export declare function searchOptions(cwd: string, topK: number | undefined, contextRadius?: number | undefined, includePaths?: string[] | undefined, excludePaths?: string[] | undefined): Promise<{
     cwd: string;
     topK?: number;
+    contextRadius?: number;
+    includePaths?: string[];
+    excludePaths?: string[];
 }>;
 export declare function projectRelativeGoldenPath(cwd: string, goldenPath: string): string;
 //# sourceMappingURL=mcp.d.ts.map

package/dist/mcp.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../src/mcp.ts"],"names":[],"mappings":"AA6CA,wBAAsB,QAAQ,CAAC,GAAG,SAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CA2J3E;AAED,wBAAgB,qBAAqB,CACnC,GAAG,GAAE,MAAM,CAAC,UAAwB,EACpC,QAAQ,SAAgB,GACvB,MAAM,CAYR;AAaD,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,GAAG,SAAS,GACvB,OAAO,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAIzC;AAmBD,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAQjF"}
+{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../src/mcp.ts"],"names":[],"mappings":"AAqDA,wBAAsB,QAAQ,CAAC,GAAG,SAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CAmN3E;AAED,wBAAgB,qBAAqB,CACnC,GAAG,GAAE,MAAM,CAAC,UAAwB,EACpC,QAAQ,SAAgB,GACvB,MAAM,CAYR;AAaD,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,EAClC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,EACnC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,GAClC,OAAO,CAAC;IACT,GAAG,EAAE,MAAM,CAAA;IACX,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,aAAa,CAAC,EAAE,MAAM,CAAA;IACtB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;IACvB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;CACxB,CAAC,CAmBD;AAmBD,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAQjF"}

package/dist/mcp.js

@@ -8,6 +8,7 @@ import { findProjectConfig, loadConfig } from "./config.js";
 import { RAGMIR_PROJECT_ROOT_ENV } from "./defaults.js";
 import { evaluateGoldenQueries } from "./evaluate.js";
 import { audit } from "./ingest.js";
+import { ingestionLimits } from "./limits.js";
 import { routePrompt } from "./prompt-routing.js";
 import { ask, search } from "./query.js";
 import { compactResearchReport, compactSearchResults, research } from "./research.js";
@@ -17,12 +18,19 @@ import { VERSION } from "./version.js";
 const queryToolInputSchema = z.object({
     query: z.string().min(1),
     topK: z.number().int().positive().optional(),
+    contextRadius: z.number().int().min(0).optional(),
+    includePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
+    excludePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
 });
-const searchToolInputSchema = queryToolInputSchema.extend({
+const researchToolInputSchema = z.object({
+    query: z.string().min(1),
+    topK: z.number().int().positive().optional(),
+    includeCode: z.boolean().optional(),
     compact: z.boolean().optional(),
+    includePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
+    excludePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
 });
-const researchToolInputSchema = queryToolInputSchema.extend({
-    includeCode: z.boolean().optional(),
+const searchToolInputSchema = queryToolInputSchema.extend({
     compact: z.boolean().optional(),
 });
 const evaluateToolInputSchema = z.object({
@@ -48,14 +56,24 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
     }, async () => {
         const config = await loadConfig(cwd);
         const chunksIndexed = await countRows(config);
+        const strict = config.privacyProfile === "strict";
         const output = {
-            projectRoot: config.projectRoot,
-            rawDir: config.rawDir,
-            storageDir: config.storageDir,
-            sourcesFile: config.sourcesFile,
+            projectRoot: strict ? "." : config.projectRoot,
+            rawDir: strict ? path.relative(config.projectRoot, config.rawDir) : config.rawDir,
+            storageDir: strict
+                ? path.relative(config.projectRoot, config.storageDir)
+                : config.storageDir,
+            sourcesFile: strict
+                ? path.relative(config.projectRoot, config.sourcesFile)
+                : config.sourcesFile,
+            privacyProfile: config.privacyProfile,
+            retrievalProfile: config.retrievalProfile,
             embeddingProvider: config.embeddingProvider,
             embeddingModel: config.embeddingModel,
-            embeddingModelPath: config.embeddingModelPath,
+            embeddingModelRevision: config.embeddingModelRevision,
+            embeddingModelPath: strict
+                ? path.relative(config.projectRoot, config.embeddingModelPath)
+                : config.embeddingModelPath,
             transformersAllowRemoteModels: config.transformersAllowRemoteModels,
             llmGeneration: false,
             redactionEnabled: config.redaction.enabled,
@@ -70,6 +88,7 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
             imageOcrTimeoutMs: config.imageOcrTimeoutMs,
             legacyWordCommand: config.legacyWordCommand,
             legacyWordTimeoutMs: config.legacyWordTimeoutMs,
+            ingestionLimits: ingestionLimits(config),
             chunksIndexed,
         };
         return textResult(output);
@@ -83,26 +102,43 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         title: "Ragmir Search",
         description: "Retrieve relevant passages from the local Ragmir knowledge base.",
         inputSchema: searchToolInputSchema,
-    }, async ({ query, topK, compact }) => {
-        const results = await search(query, await searchOptions(cwd, topK));
-        return textResult(compact ? compactSearchResults(results) : results);
+    }, async ({ query, topK, contextRadius, compact, includePaths, excludePaths }) => {
+        const config = await loadConfig(cwd);
+        const results = await search(query, await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths));
+        const compactOutput = compact ?? config.privacyProfile === "strict";
+        return textResult(compactOutput ? compactSearchResults(results) : results);
     });
     server.registerTool("ragmir_ask", {
         title: "Ragmir Ask",
         description: "Return cited retrieval context for a question without calling an LLM.",
         inputSchema: queryToolInputSchema,
-    }, async ({ query, topK }) => textResult(await ask(query, await searchOptions(cwd, topK))));
+    }, async ({ query, topK, contextRadius, includePaths, excludePaths }) => {
+        const config = await loadConfig(cwd);
+        const options = await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths);
+        if (config.privacyProfile === "strict") {
+            const results = await search(query, options);
+            return textResult({
+                answer: "Strict privacy profile returns compact cited retrieval only.",
+                sources: compactSearchResults(results),
+            });
+        }
+        return textResult(await ask(query, options));
+    });
     server.registerTool("ragmir_research", {
         title: "Ragmir Research",
         description: "Run an audit-backed multi-query research pass with cited evidence and optional code matches.",
         inputSchema: researchToolInputSchema,
-    }, async ({ query, topK, includeCode, compact }) => {
-        const options = await searchOptions(cwd, topK);
+    }, async ({ query, topK, includeCode, compact, includePaths, excludePaths }) => {
+        const config = await loadConfig(cwd);
+        const options = await searchOptions(cwd, topK, undefined, includePaths, excludePaths);
         const researchOptions = { cwd };
         addOption(researchOptions, "topK", options.topK);
         addOption(researchOptions, "includeCode", includeCode);
+        addOption(researchOptions, "includePaths", options.includePaths);
+        addOption(researchOptions, "excludePaths", options.excludePaths);
         const result = await research(query, researchOptions);
-        return textResult(compact ? compactResearchReport(result) : result);
+        const compactOutput = compact ?? config.privacyProfile === "strict";
+        return textResult(compactOutput ? compactResearchReport(result) : result);
     });
     server.registerTool("ragmir_audit", {
         title: "Ragmir Audit",
@@ -129,7 +165,29 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         title: "Ragmir Security Audit",
         description: "Show local privacy, provider, redaction, MCP, and gitignore posture.",
         inputSchema: z.object({}),
-    }, async () => textResult(await securityAudit(cwd)));
+    }, async () => {
+        const config = await loadConfig(cwd);
+        const report = await securityAudit(cwd);
+        if (config.privacyProfile !== "strict") {
+            return textResult(report);
+        }
+        return textResult({
+            ...report,
+            projectRoot: ".",
+            providers: {
+                ...report.providers,
+                embeddingModelPath: path.relative(config.projectRoot, report.providers.embeddingModelPath),
+            },
+            accessLog: {
+                ...report.accessLog,
+                path: path.relative(config.projectRoot, report.accessLog.path),
+            },
+            storage: {
+                ...report.storage,
+                path: path.relative(config.projectRoot, report.storage.path),
+            },
+        });
+    });
     server.registerTool("ragmir_usage_report", {
         title: "Ragmir Usage Report",
         description: "Summarize the metadata-only local access log.",
@@ -164,10 +222,18 @@ function textResult(value) {
         ],
     };
 }
-export async function searchOptions(cwd, topK) {
+export async function searchOptions(cwd, topK, contextRadius, includePaths, excludePaths) {
     const config = await loadConfig(cwd);
     const boundedTopK = Math.min(topK ?? config.topK, config.mcpMaxTopK);
-    return { cwd, topK: boundedTopK };
+    const boundedContextRadius = contextRadius === undefined ? undefined : Math.min(Math.max(0, contextRadius), 3);
+    const result = {
+        cwd,
+        topK: boundedTopK,
+    };
+    addOption(result, "contextRadius", boundedContextRadius);
+    addOption(result, "includePaths", includePaths);
+    addOption(result, "excludePaths", excludePaths);
+    return result;
 }
 async function evaluationOptions(cwd, goldenPath, topK) {
     const config = await loadConfig(cwd);