@jbrowse/react-linear-genome-view2 4.0.4 → 4.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/react-linear-genome-view.umd.production.min.js +229 -0
- package/dist/react-linear-genome-view.umd.production.min.js.LICENSE.txt +145 -0
- package/dist/react-linear-genome-view.umd.production.min.js.map +1 -0
- package/esm/createModel/createModel.d.ts +158 -142
- package/esm/createModel/createSessionModel.d.ts +79 -71
- package/esm/createViewState.d.ts +433 -389
- package/esm/version.d.ts +1 -1
- package/esm/version.js +1 -1
- package/package.json +46 -22
- package/LICENSE +0 -201
package/esm/createViewState.d.ts
CHANGED
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@@ -249,10 +249,10 @@ export default function createViewState(opts: ViewStateOptions): {
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showCytobandsSetting: boolean;
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trackLabels: string;
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showGridlines: boolean;
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highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
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colorByCDS: boolean;
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showTrackOutlines: boolean;
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init: (import("@jbrowse/plugin-linear-genome-view
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init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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width: number;
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} & {
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@@ -272,10 +272,11 @@ export default function createViewState(opts: ViewStateOptions): {
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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@@ -335,12 +336,13 @@ export default function createViewState(opts: ViewStateOptions): {
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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@@ -357,7 +359,7 @@ export default function createViewState(opts: ViewStateOptions): {
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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@@ -372,8 +374,8 @@ export default function createViewState(opts: ViewStateOptions): {
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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@@ -398,7 +400,7 @@ export default function createViewState(opts: ViewStateOptions): {
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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} & {
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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navToSearchString({ input, assembly, }: {
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input: string;
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@@ -406,8 +408,8 @@ export default function createViewState(opts: ViewStateOptions): {
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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@@ -443,7 +445,7 @@ export default function createViewState(opts: ViewStateOptions): {
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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} & {
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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} & {
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afterCreate(): void;
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afterAttach(): void;
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@@ -466,10 +468,10 @@ export default function createViewState(opts: ViewStateOptions): {
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}, {
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width: number;
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} & {
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@@ -489,10 +491,11 @@ export default function createViewState(opts: ViewStateOptions): {
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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} & {
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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navToSearchString({ input, assembly, }: {
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input: string;
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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} & {
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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} & {
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afterCreate(): void;
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afterAttach(): void;
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
691
695
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
692
696
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -706,10 +710,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
706
710
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
707
711
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
708
712
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
709
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
713
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
710
714
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
711
715
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
712
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
716
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
713
717
|
}>>>;
|
|
714
718
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
715
719
|
selection: unknown;
|
|
@@ -2451,9 +2455,9 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2451
2455
|
} & {
|
|
2452
2456
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
2453
2457
|
} & {
|
|
2454
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
2455
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
2456
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
2458
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
2459
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
2460
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
2457
2461
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
2458
2462
|
removeSnackbarMessage(message: string): void;
|
|
2459
2463
|
} & {
|
|
@@ -2480,10 +2484,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2480
2484
|
showCytobandsSetting: boolean;
|
|
2481
2485
|
trackLabels: string;
|
|
2482
2486
|
showGridlines: boolean;
|
|
2483
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2487
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
2484
2488
|
colorByCDS: boolean;
|
|
2485
2489
|
showTrackOutlines: boolean;
|
|
2486
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
2490
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
2487
2491
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2488
2492
|
width: number;
|
|
2489
2493
|
} & {
|
|
@@ -2503,10 +2507,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2503
2507
|
trackRefs: Record<string, HTMLDivElement>;
|
|
2504
2508
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2505
2509
|
coarseTotalBp: number;
|
|
2506
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2507
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2510
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2511
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2508
2512
|
isScalebarRefNameMenuOpen: boolean;
|
|
2509
2513
|
scalebarRefNameClickPending: boolean;
|
|
2514
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
2510
2515
|
} & {
|
|
2511
2516
|
readonly pinnedTracks: any[];
|
|
2512
2517
|
readonly unpinnedTracks: any[];
|
|
@@ -2566,12 +2571,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2566
2571
|
setHideHeaderOverview(b: boolean): void;
|
|
2567
2572
|
setHideNoTracksActive(b: boolean): void;
|
|
2568
2573
|
setShowGridlines(b: boolean): void;
|
|
2569
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2570
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
2571
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2574
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2575
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
2576
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2577
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
2572
2578
|
scrollTo(offsetPx: number): number;
|
|
2573
2579
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
2574
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
2580
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2575
2581
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
2576
2582
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
2577
2583
|
horizontallyFlip(): void;
|
|
@@ -2588,7 +2594,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2588
2594
|
setShowCenterLine(b: boolean): void;
|
|
2589
2595
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
2590
2596
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
2591
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
2597
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
2592
2598
|
assemblyName: string;
|
|
2593
2599
|
refName: string;
|
|
2594
2600
|
start: number;
|
|
@@ -2603,8 +2609,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2603
2609
|
setScaleFactor(factor: number): void;
|
|
2604
2610
|
setTargetBpPerPx(target: number | undefined): void;
|
|
2605
2611
|
clearView(): void;
|
|
2606
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
2607
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
2612
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
2613
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
2608
2614
|
} & {
|
|
2609
2615
|
slide: (viewWidths: number) => void;
|
|
2610
2616
|
} & {
|
|
@@ -2629,7 +2635,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2629
2635
|
} & {
|
|
2630
2636
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
2631
2637
|
} & {
|
|
2632
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
2638
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2633
2639
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
2634
2640
|
navToSearchString({ input, assembly, }: {
|
|
2635
2641
|
input: string;
|
|
@@ -2637,8 +2643,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2637
2643
|
}): Promise<void>;
|
|
2638
2644
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
2639
2645
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
2640
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
2641
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
2646
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
2647
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
2642
2648
|
} & {
|
|
2643
2649
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2644
2650
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -2674,7 +2680,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2674
2680
|
} | undefined;
|
|
2675
2681
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2676
2682
|
} & {
|
|
2677
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
2683
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
2678
2684
|
} & {
|
|
2679
2685
|
afterCreate(): void;
|
|
2680
2686
|
afterAttach(): void;
|
|
@@ -2697,10 +2703,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2697
2703
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2698
2704
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2699
2705
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2700
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2706
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2701
2707
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2702
2708
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2703
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2709
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2704
2710
|
}, {
|
|
2705
2711
|
width: number;
|
|
2706
2712
|
} & {
|
|
@@ -2720,10 +2726,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2720
2726
|
trackRefs: Record<string, HTMLDivElement>;
|
|
2721
2727
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2722
2728
|
coarseTotalBp: number;
|
|
2723
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2724
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2729
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2730
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2725
2731
|
isScalebarRefNameMenuOpen: boolean;
|
|
2726
2732
|
scalebarRefNameClickPending: boolean;
|
|
2733
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
2727
2734
|
} & {
|
|
2728
2735
|
readonly pinnedTracks: any[];
|
|
2729
2736
|
readonly unpinnedTracks: any[];
|
|
@@ -2783,12 +2790,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2783
2790
|
setHideHeaderOverview(b: boolean): void;
|
|
2784
2791
|
setHideNoTracksActive(b: boolean): void;
|
|
2785
2792
|
setShowGridlines(b: boolean): void;
|
|
2786
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2787
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
2788
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2793
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2794
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
2795
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2796
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
2789
2797
|
scrollTo(offsetPx: number): number;
|
|
2790
2798
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
2791
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
2799
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2792
2800
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
2793
2801
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
2794
2802
|
horizontallyFlip(): void;
|
|
@@ -2805,7 +2813,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2805
2813
|
setShowCenterLine(b: boolean): void;
|
|
2806
2814
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
2807
2815
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
2808
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
2816
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
2809
2817
|
assemblyName: string;
|
|
2810
2818
|
refName: string;
|
|
2811
2819
|
start: number;
|
|
@@ -2820,8 +2828,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2820
2828
|
setScaleFactor(factor: number): void;
|
|
2821
2829
|
setTargetBpPerPx(target: number | undefined): void;
|
|
2822
2830
|
clearView(): void;
|
|
2823
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
2824
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
2831
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
2832
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
2825
2833
|
} & {
|
|
2826
2834
|
slide: (viewWidths: number) => void;
|
|
2827
2835
|
} & {
|
|
@@ -2846,7 +2854,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2846
2854
|
} & {
|
|
2847
2855
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
2848
2856
|
} & {
|
|
2849
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
2857
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2850
2858
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
2851
2859
|
navToSearchString({ input, assembly, }: {
|
|
2852
2860
|
input: string;
|
|
@@ -2854,8 +2862,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2854
2862
|
}): Promise<void>;
|
|
2855
2863
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
2856
2864
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
2857
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
2858
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
2865
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
2866
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
2859
2867
|
} & {
|
|
2860
2868
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2861
2869
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -2891,7 +2899,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2891
2899
|
} | undefined;
|
|
2892
2900
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2893
2901
|
} & {
|
|
2894
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
2902
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
2895
2903
|
} & {
|
|
2896
2904
|
afterCreate(): void;
|
|
2897
2905
|
afterAttach(): void;
|
|
@@ -2914,10 +2922,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2914
2922
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2915
2923
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2916
2924
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2917
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2925
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2918
2926
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2919
2927
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2920
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2928
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2921
2929
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
2922
2930
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2923
2931
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -2937,10 +2945,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2937
2945
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2938
2946
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2939
2947
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2940
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2948
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2941
2949
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2942
2950
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2943
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2951
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2944
2952
|
}>>>)[];
|
|
2945
2953
|
renderProps(): {
|
|
2946
2954
|
theme: any;
|
|
@@ -2964,10 +2972,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2964
2972
|
showCytobandsSetting: boolean;
|
|
2965
2973
|
trackLabels: string;
|
|
2966
2974
|
showGridlines: boolean;
|
|
2967
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2975
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
2968
2976
|
colorByCDS: boolean;
|
|
2969
2977
|
showTrackOutlines: boolean;
|
|
2970
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
2978
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
2971
2979
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2972
2980
|
width: number;
|
|
2973
2981
|
} & {
|
|
@@ -2987,10 +2995,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
2987
2995
|
trackRefs: Record<string, HTMLDivElement>;
|
|
2988
2996
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2989
2997
|
coarseTotalBp: number;
|
|
2990
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2991
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2998
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2999
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2992
3000
|
isScalebarRefNameMenuOpen: boolean;
|
|
2993
3001
|
scalebarRefNameClickPending: boolean;
|
|
3002
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
2994
3003
|
} & {
|
|
2995
3004
|
readonly pinnedTracks: any[];
|
|
2996
3005
|
readonly unpinnedTracks: any[];
|
|
@@ -3050,12 +3059,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3050
3059
|
setHideHeaderOverview(b: boolean): void;
|
|
3051
3060
|
setHideNoTracksActive(b: boolean): void;
|
|
3052
3061
|
setShowGridlines(b: boolean): void;
|
|
3053
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
3054
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
3055
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
3062
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
3063
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
3064
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
3065
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
3056
3066
|
scrollTo(offsetPx: number): number;
|
|
3057
3067
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
3058
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
3068
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
3059
3069
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
3060
3070
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
3061
3071
|
horizontallyFlip(): void;
|
|
@@ -3072,7 +3082,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3072
3082
|
setShowCenterLine(b: boolean): void;
|
|
3073
3083
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
3074
3084
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
3075
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
3085
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
3076
3086
|
assemblyName: string;
|
|
3077
3087
|
refName: string;
|
|
3078
3088
|
start: number;
|
|
@@ -3087,8 +3097,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3087
3097
|
setScaleFactor(factor: number): void;
|
|
3088
3098
|
setTargetBpPerPx(target: number | undefined): void;
|
|
3089
3099
|
clearView(): void;
|
|
3090
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
3091
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
3100
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
3101
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
3092
3102
|
} & {
|
|
3093
3103
|
slide: (viewWidths: number) => void;
|
|
3094
3104
|
} & {
|
|
@@ -3113,7 +3123,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3113
3123
|
} & {
|
|
3114
3124
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
3115
3125
|
} & {
|
|
3116
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
3126
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
3117
3127
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
3118
3128
|
navToSearchString({ input, assembly, }: {
|
|
3119
3129
|
input: string;
|
|
@@ -3121,8 +3131,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3121
3131
|
}): Promise<void>;
|
|
3122
3132
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
3123
3133
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
3124
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
3125
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
3134
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
3135
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
3126
3136
|
} & {
|
|
3127
3137
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
3128
3138
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -3158,7 +3168,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3158
3168
|
} | undefined;
|
|
3159
3169
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
3160
3170
|
} & {
|
|
3161
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
3171
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
3162
3172
|
} & {
|
|
3163
3173
|
afterCreate(): void;
|
|
3164
3174
|
afterAttach(): void;
|
|
@@ -3181,10 +3191,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3181
3191
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3182
3192
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3183
3193
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3184
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3194
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
3185
3195
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3186
3196
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3187
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3197
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
3188
3198
|
}, {
|
|
3189
3199
|
width: number;
|
|
3190
3200
|
} & {
|
|
@@ -3204,10 +3214,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3204
3214
|
trackRefs: Record<string, HTMLDivElement>;
|
|
3205
3215
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
3206
3216
|
coarseTotalBp: number;
|
|
3207
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
3208
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
3217
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
3218
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
3209
3219
|
isScalebarRefNameMenuOpen: boolean;
|
|
3210
3220
|
scalebarRefNameClickPending: boolean;
|
|
3221
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
3211
3222
|
} & {
|
|
3212
3223
|
readonly pinnedTracks: any[];
|
|
3213
3224
|
readonly unpinnedTracks: any[];
|
|
@@ -3267,12 +3278,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3267
3278
|
setHideHeaderOverview(b: boolean): void;
|
|
3268
3279
|
setHideNoTracksActive(b: boolean): void;
|
|
3269
3280
|
setShowGridlines(b: boolean): void;
|
|
3270
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
3271
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
3272
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
3281
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
3282
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
3283
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
3284
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
3273
3285
|
scrollTo(offsetPx: number): number;
|
|
3274
3286
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
3275
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
3287
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
3276
3288
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
3277
3289
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
3278
3290
|
horizontallyFlip(): void;
|
|
@@ -3289,7 +3301,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3289
3301
|
setShowCenterLine(b: boolean): void;
|
|
3290
3302
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
3291
3303
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
3292
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
3304
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
3293
3305
|
assemblyName: string;
|
|
3294
3306
|
refName: string;
|
|
3295
3307
|
start: number;
|
|
@@ -3304,8 +3316,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3304
3316
|
setScaleFactor(factor: number): void;
|
|
3305
3317
|
setTargetBpPerPx(target: number | undefined): void;
|
|
3306
3318
|
clearView(): void;
|
|
3307
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
3308
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
3319
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
3320
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
3309
3321
|
} & {
|
|
3310
3322
|
slide: (viewWidths: number) => void;
|
|
3311
3323
|
} & {
|
|
@@ -3330,7 +3342,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3330
3342
|
} & {
|
|
3331
3343
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
3332
3344
|
} & {
|
|
3333
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
3345
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
3334
3346
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
3335
3347
|
navToSearchString({ input, assembly, }: {
|
|
3336
3348
|
input: string;
|
|
@@ -3338,8 +3350,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3338
3350
|
}): Promise<void>;
|
|
3339
3351
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
3340
3352
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
3341
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
3342
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
3353
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
3354
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
3343
3355
|
} & {
|
|
3344
3356
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
3345
3357
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -3375,7 +3387,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3375
3387
|
} | undefined;
|
|
3376
3388
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
3377
3389
|
} & {
|
|
3378
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
3390
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
3379
3391
|
} & {
|
|
3380
3392
|
afterCreate(): void;
|
|
3381
3393
|
afterAttach(): void;
|
|
@@ -3398,10 +3410,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3398
3410
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3399
3411
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3400
3412
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3401
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3413
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
3402
3414
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3403
3415
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3404
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3416
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
3405
3417
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
3406
3418
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3407
3419
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -3421,10 +3433,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
3421
3433
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3422
3434
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3423
3435
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3424
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3436
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
3425
3437
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3426
3438
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
3427
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
3439
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
3428
3440
|
}>>>;
|
|
3429
3441
|
removeView(): void;
|
|
3430
3442
|
} & {
|
|
@@ -5186,9 +5198,9 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5186
5198
|
} & {
|
|
5187
5199
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
5188
5200
|
} & {
|
|
5189
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
5190
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
5191
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
5201
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
5202
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
5203
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
5192
5204
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
5193
5205
|
removeSnackbarMessage(message: string): void;
|
|
5194
5206
|
} & {
|
|
@@ -5215,10 +5227,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5215
5227
|
showCytobandsSetting: boolean;
|
|
5216
5228
|
trackLabels: string;
|
|
5217
5229
|
showGridlines: boolean;
|
|
5218
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5230
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
5219
5231
|
colorByCDS: boolean;
|
|
5220
5232
|
showTrackOutlines: boolean;
|
|
5221
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
5233
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
5222
5234
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
5223
5235
|
width: number;
|
|
5224
5236
|
} & {
|
|
@@ -5238,10 +5250,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5238
5250
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5239
5251
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5240
5252
|
coarseTotalBp: number;
|
|
5241
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5242
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5253
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5254
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5243
5255
|
isScalebarRefNameMenuOpen: boolean;
|
|
5244
5256
|
scalebarRefNameClickPending: boolean;
|
|
5257
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5245
5258
|
} & {
|
|
5246
5259
|
readonly pinnedTracks: any[];
|
|
5247
5260
|
readonly unpinnedTracks: any[];
|
|
@@ -5301,12 +5314,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5301
5314
|
setHideHeaderOverview(b: boolean): void;
|
|
5302
5315
|
setHideNoTracksActive(b: boolean): void;
|
|
5303
5316
|
setShowGridlines(b: boolean): void;
|
|
5304
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5305
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5306
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5317
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5318
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5319
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5320
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5307
5321
|
scrollTo(offsetPx: number): number;
|
|
5308
5322
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5309
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5323
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5310
5324
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5311
5325
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5312
5326
|
horizontallyFlip(): void;
|
|
@@ -5323,7 +5337,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5323
5337
|
setShowCenterLine(b: boolean): void;
|
|
5324
5338
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5325
5339
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5326
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5340
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5327
5341
|
assemblyName: string;
|
|
5328
5342
|
refName: string;
|
|
5329
5343
|
start: number;
|
|
@@ -5338,8 +5352,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5338
5352
|
setScaleFactor(factor: number): void;
|
|
5339
5353
|
setTargetBpPerPx(target: number | undefined): void;
|
|
5340
5354
|
clearView(): void;
|
|
5341
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5342
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5355
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5356
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5343
5357
|
} & {
|
|
5344
5358
|
slide: (viewWidths: number) => void;
|
|
5345
5359
|
} & {
|
|
@@ -5364,7 +5378,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5364
5378
|
} & {
|
|
5365
5379
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5366
5380
|
} & {
|
|
5367
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5381
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5368
5382
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5369
5383
|
navToSearchString({ input, assembly, }: {
|
|
5370
5384
|
input: string;
|
|
@@ -5372,8 +5386,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5372
5386
|
}): Promise<void>;
|
|
5373
5387
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5374
5388
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5375
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5376
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5389
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5390
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5377
5391
|
} & {
|
|
5378
5392
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5379
5393
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5409,7 +5423,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5409
5423
|
} | undefined;
|
|
5410
5424
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5411
5425
|
} & {
|
|
5412
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5426
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5413
5427
|
} & {
|
|
5414
5428
|
afterCreate(): void;
|
|
5415
5429
|
afterAttach(): void;
|
|
@@ -5432,10 +5446,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5432
5446
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5433
5447
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5434
5448
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5435
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5449
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5436
5450
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5437
5451
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5438
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5452
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5439
5453
|
}, {
|
|
5440
5454
|
width: number;
|
|
5441
5455
|
} & {
|
|
@@ -5455,10 +5469,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5455
5469
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5456
5470
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5457
5471
|
coarseTotalBp: number;
|
|
5458
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5459
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5472
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5473
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5460
5474
|
isScalebarRefNameMenuOpen: boolean;
|
|
5461
5475
|
scalebarRefNameClickPending: boolean;
|
|
5476
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5462
5477
|
} & {
|
|
5463
5478
|
readonly pinnedTracks: any[];
|
|
5464
5479
|
readonly unpinnedTracks: any[];
|
|
@@ -5518,12 +5533,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5518
5533
|
setHideHeaderOverview(b: boolean): void;
|
|
5519
5534
|
setHideNoTracksActive(b: boolean): void;
|
|
5520
5535
|
setShowGridlines(b: boolean): void;
|
|
5521
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5522
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5523
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5536
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5537
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5538
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5539
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5524
5540
|
scrollTo(offsetPx: number): number;
|
|
5525
5541
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5526
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5542
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5527
5543
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5528
5544
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5529
5545
|
horizontallyFlip(): void;
|
|
@@ -5540,7 +5556,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5540
5556
|
setShowCenterLine(b: boolean): void;
|
|
5541
5557
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5542
5558
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5543
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5559
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5544
5560
|
assemblyName: string;
|
|
5545
5561
|
refName: string;
|
|
5546
5562
|
start: number;
|
|
@@ -5555,8 +5571,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5555
5571
|
setScaleFactor(factor: number): void;
|
|
5556
5572
|
setTargetBpPerPx(target: number | undefined): void;
|
|
5557
5573
|
clearView(): void;
|
|
5558
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5559
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5574
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5575
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5560
5576
|
} & {
|
|
5561
5577
|
slide: (viewWidths: number) => void;
|
|
5562
5578
|
} & {
|
|
@@ -5581,7 +5597,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5581
5597
|
} & {
|
|
5582
5598
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5583
5599
|
} & {
|
|
5584
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5600
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5585
5601
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5586
5602
|
navToSearchString({ input, assembly, }: {
|
|
5587
5603
|
input: string;
|
|
@@ -5589,8 +5605,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5589
5605
|
}): Promise<void>;
|
|
5590
5606
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5591
5607
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5592
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5593
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5608
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5609
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5594
5610
|
} & {
|
|
5595
5611
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5596
5612
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5626,7 +5642,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5626
5642
|
} | undefined;
|
|
5627
5643
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5628
5644
|
} & {
|
|
5629
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5645
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5630
5646
|
} & {
|
|
5631
5647
|
afterCreate(): void;
|
|
5632
5648
|
afterAttach(): void;
|
|
@@ -5649,10 +5665,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5649
5665
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5650
5666
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5651
5667
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5652
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5668
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5653
5669
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5654
5670
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5655
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5671
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5656
5672
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
5657
5673
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5658
5674
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -5672,10 +5688,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5672
5688
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5673
5689
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5674
5690
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5675
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5691
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5676
5692
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5677
5693
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5678
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5694
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5679
5695
|
}>>>)[];
|
|
5680
5696
|
renderProps(): {
|
|
5681
5697
|
theme: any;
|
|
@@ -5699,10 +5715,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5699
5715
|
showCytobandsSetting: boolean;
|
|
5700
5716
|
trackLabels: string;
|
|
5701
5717
|
showGridlines: boolean;
|
|
5702
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5718
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
5703
5719
|
colorByCDS: boolean;
|
|
5704
5720
|
showTrackOutlines: boolean;
|
|
5705
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
5721
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
5706
5722
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
5707
5723
|
width: number;
|
|
5708
5724
|
} & {
|
|
@@ -5722,10 +5738,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5722
5738
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5723
5739
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5724
5740
|
coarseTotalBp: number;
|
|
5725
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5726
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5741
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5742
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5727
5743
|
isScalebarRefNameMenuOpen: boolean;
|
|
5728
5744
|
scalebarRefNameClickPending: boolean;
|
|
5745
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5729
5746
|
} & {
|
|
5730
5747
|
readonly pinnedTracks: any[];
|
|
5731
5748
|
readonly unpinnedTracks: any[];
|
|
@@ -5785,12 +5802,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5785
5802
|
setHideHeaderOverview(b: boolean): void;
|
|
5786
5803
|
setHideNoTracksActive(b: boolean): void;
|
|
5787
5804
|
setShowGridlines(b: boolean): void;
|
|
5788
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5789
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5790
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5805
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5806
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5807
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5808
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5791
5809
|
scrollTo(offsetPx: number): number;
|
|
5792
5810
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5793
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5811
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5794
5812
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5795
5813
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5796
5814
|
horizontallyFlip(): void;
|
|
@@ -5807,7 +5825,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5807
5825
|
setShowCenterLine(b: boolean): void;
|
|
5808
5826
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5809
5827
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5810
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5828
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5811
5829
|
assemblyName: string;
|
|
5812
5830
|
refName: string;
|
|
5813
5831
|
start: number;
|
|
@@ -5822,8 +5840,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5822
5840
|
setScaleFactor(factor: number): void;
|
|
5823
5841
|
setTargetBpPerPx(target: number | undefined): void;
|
|
5824
5842
|
clearView(): void;
|
|
5825
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5826
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5843
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5844
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5827
5845
|
} & {
|
|
5828
5846
|
slide: (viewWidths: number) => void;
|
|
5829
5847
|
} & {
|
|
@@ -5848,7 +5866,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5848
5866
|
} & {
|
|
5849
5867
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5850
5868
|
} & {
|
|
5851
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5869
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5852
5870
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5853
5871
|
navToSearchString({ input, assembly, }: {
|
|
5854
5872
|
input: string;
|
|
@@ -5856,8 +5874,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5856
5874
|
}): Promise<void>;
|
|
5857
5875
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5858
5876
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5859
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5860
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5877
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5878
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5861
5879
|
} & {
|
|
5862
5880
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5863
5881
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5893,7 +5911,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5893
5911
|
} | undefined;
|
|
5894
5912
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5895
5913
|
} & {
|
|
5896
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5914
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5897
5915
|
} & {
|
|
5898
5916
|
afterCreate(): void;
|
|
5899
5917
|
afterAttach(): void;
|
|
@@ -5916,10 +5934,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5916
5934
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5917
5935
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5918
5936
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5919
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5937
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5920
5938
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5921
5939
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5922
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5940
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5923
5941
|
}, {
|
|
5924
5942
|
width: number;
|
|
5925
5943
|
} & {
|
|
@@ -5939,10 +5957,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
5939
5957
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5940
5958
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5941
5959
|
coarseTotalBp: number;
|
|
5942
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5943
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5960
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5961
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5944
5962
|
isScalebarRefNameMenuOpen: boolean;
|
|
5945
5963
|
scalebarRefNameClickPending: boolean;
|
|
5964
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5946
5965
|
} & {
|
|
5947
5966
|
readonly pinnedTracks: any[];
|
|
5948
5967
|
readonly unpinnedTracks: any[];
|
|
@@ -6002,12 +6021,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6002
6021
|
setHideHeaderOverview(b: boolean): void;
|
|
6003
6022
|
setHideNoTracksActive(b: boolean): void;
|
|
6004
6023
|
setShowGridlines(b: boolean): void;
|
|
6005
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
6006
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
6007
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
6024
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
6025
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
6026
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
6027
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
6008
6028
|
scrollTo(offsetPx: number): number;
|
|
6009
6029
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
6010
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
6030
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
6011
6031
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
6012
6032
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
6013
6033
|
horizontallyFlip(): void;
|
|
@@ -6024,7 +6044,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6024
6044
|
setShowCenterLine(b: boolean): void;
|
|
6025
6045
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
6026
6046
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
6027
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
6047
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
6028
6048
|
assemblyName: string;
|
|
6029
6049
|
refName: string;
|
|
6030
6050
|
start: number;
|
|
@@ -6039,8 +6059,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6039
6059
|
setScaleFactor(factor: number): void;
|
|
6040
6060
|
setTargetBpPerPx(target: number | undefined): void;
|
|
6041
6061
|
clearView(): void;
|
|
6042
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
6043
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
6062
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
6063
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
6044
6064
|
} & {
|
|
6045
6065
|
slide: (viewWidths: number) => void;
|
|
6046
6066
|
} & {
|
|
@@ -6065,7 +6085,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6065
6085
|
} & {
|
|
6066
6086
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
6067
6087
|
} & {
|
|
6068
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
6088
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
6069
6089
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
6070
6090
|
navToSearchString({ input, assembly, }: {
|
|
6071
6091
|
input: string;
|
|
@@ -6073,8 +6093,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6073
6093
|
}): Promise<void>;
|
|
6074
6094
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
6075
6095
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
6076
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
6077
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
6096
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
6097
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
6078
6098
|
} & {
|
|
6079
6099
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
6080
6100
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -6110,7 +6130,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6110
6130
|
} | undefined;
|
|
6111
6131
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
6112
6132
|
} & {
|
|
6113
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
6133
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
6114
6134
|
} & {
|
|
6115
6135
|
afterCreate(): void;
|
|
6116
6136
|
afterAttach(): void;
|
|
@@ -6133,10 +6153,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6133
6153
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6134
6154
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6135
6155
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
6136
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6156
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
6137
6157
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6138
6158
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6139
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6159
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
6140
6160
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
6141
6161
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6142
6162
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -6156,10 +6176,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
6156
6176
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6157
6177
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6158
6178
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
6159
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6179
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
6160
6180
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6161
6181
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6162
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6182
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
6163
6183
|
}>>>;
|
|
6164
6184
|
removeView(): void;
|
|
6165
6185
|
} & {
|
|
@@ -9055,9 +9075,9 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9055
9075
|
} & {
|
|
9056
9076
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
9057
9077
|
} & {
|
|
9058
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
9059
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
9060
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
9078
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
9079
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
9080
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
9061
9081
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
9062
9082
|
removeSnackbarMessage(message: string): void;
|
|
9063
9083
|
} & {
|
|
@@ -9084,10 +9104,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9084
9104
|
showCytobandsSetting: boolean;
|
|
9085
9105
|
trackLabels: string;
|
|
9086
9106
|
showGridlines: boolean;
|
|
9087
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9107
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
9088
9108
|
colorByCDS: boolean;
|
|
9089
9109
|
showTrackOutlines: boolean;
|
|
9090
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
9110
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
9091
9111
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
9092
9112
|
width: number;
|
|
9093
9113
|
} & {
|
|
@@ -9107,10 +9127,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9107
9127
|
trackRefs: Record<string, HTMLDivElement>;
|
|
9108
9128
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9109
9129
|
coarseTotalBp: number;
|
|
9110
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9111
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9130
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9131
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9112
9132
|
isScalebarRefNameMenuOpen: boolean;
|
|
9113
9133
|
scalebarRefNameClickPending: boolean;
|
|
9134
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
9114
9135
|
} & {
|
|
9115
9136
|
readonly pinnedTracks: any[];
|
|
9116
9137
|
readonly unpinnedTracks: any[];
|
|
@@ -9170,12 +9191,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9170
9191
|
setHideHeaderOverview(b: boolean): void;
|
|
9171
9192
|
setHideNoTracksActive(b: boolean): void;
|
|
9172
9193
|
setShowGridlines(b: boolean): void;
|
|
9173
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9174
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
9175
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9194
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9195
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
9196
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9197
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
9176
9198
|
scrollTo(offsetPx: number): number;
|
|
9177
9199
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
9178
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
9200
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9179
9201
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
9180
9202
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
9181
9203
|
horizontallyFlip(): void;
|
|
@@ -9192,7 +9214,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9192
9214
|
setShowCenterLine(b: boolean): void;
|
|
9193
9215
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
9194
9216
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
9195
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
9217
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
9196
9218
|
assemblyName: string;
|
|
9197
9219
|
refName: string;
|
|
9198
9220
|
start: number;
|
|
@@ -9207,8 +9229,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9207
9229
|
setScaleFactor(factor: number): void;
|
|
9208
9230
|
setTargetBpPerPx(target: number | undefined): void;
|
|
9209
9231
|
clearView(): void;
|
|
9210
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
9211
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
9232
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
9233
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
9212
9234
|
} & {
|
|
9213
9235
|
slide: (viewWidths: number) => void;
|
|
9214
9236
|
} & {
|
|
@@ -9233,7 +9255,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9233
9255
|
} & {
|
|
9234
9256
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
9235
9257
|
} & {
|
|
9236
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
9258
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9237
9259
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
9238
9260
|
navToSearchString({ input, assembly, }: {
|
|
9239
9261
|
input: string;
|
|
@@ -9241,8 +9263,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9241
9263
|
}): Promise<void>;
|
|
9242
9264
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
9243
9265
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
9244
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
9245
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
9266
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
9267
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
9246
9268
|
} & {
|
|
9247
9269
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
9248
9270
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -9278,7 +9300,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9278
9300
|
} | undefined;
|
|
9279
9301
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9280
9302
|
} & {
|
|
9281
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
9303
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
9282
9304
|
} & {
|
|
9283
9305
|
afterCreate(): void;
|
|
9284
9306
|
afterAttach(): void;
|
|
@@ -9301,10 +9323,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9301
9323
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9302
9324
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9303
9325
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
9304
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9326
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
9305
9327
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9306
9328
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9307
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9329
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
9308
9330
|
}, {
|
|
9309
9331
|
width: number;
|
|
9310
9332
|
} & {
|
|
@@ -9324,10 +9346,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9324
9346
|
trackRefs: Record<string, HTMLDivElement>;
|
|
9325
9347
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9326
9348
|
coarseTotalBp: number;
|
|
9327
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9328
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9349
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9350
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9329
9351
|
isScalebarRefNameMenuOpen: boolean;
|
|
9330
9352
|
scalebarRefNameClickPending: boolean;
|
|
9353
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
9331
9354
|
} & {
|
|
9332
9355
|
readonly pinnedTracks: any[];
|
|
9333
9356
|
readonly unpinnedTracks: any[];
|
|
@@ -9387,12 +9410,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9387
9410
|
setHideHeaderOverview(b: boolean): void;
|
|
9388
9411
|
setHideNoTracksActive(b: boolean): void;
|
|
9389
9412
|
setShowGridlines(b: boolean): void;
|
|
9390
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9391
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
9392
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9413
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9414
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
9415
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9416
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
9393
9417
|
scrollTo(offsetPx: number): number;
|
|
9394
9418
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
9395
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
9419
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9396
9420
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
9397
9421
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
9398
9422
|
horizontallyFlip(): void;
|
|
@@ -9409,7 +9433,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9409
9433
|
setShowCenterLine(b: boolean): void;
|
|
9410
9434
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
9411
9435
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
9412
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
9436
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
9413
9437
|
assemblyName: string;
|
|
9414
9438
|
refName: string;
|
|
9415
9439
|
start: number;
|
|
@@ -9424,8 +9448,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9424
9448
|
setScaleFactor(factor: number): void;
|
|
9425
9449
|
setTargetBpPerPx(target: number | undefined): void;
|
|
9426
9450
|
clearView(): void;
|
|
9427
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
9428
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
9451
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
9452
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
9429
9453
|
} & {
|
|
9430
9454
|
slide: (viewWidths: number) => void;
|
|
9431
9455
|
} & {
|
|
@@ -9450,7 +9474,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9450
9474
|
} & {
|
|
9451
9475
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
9452
9476
|
} & {
|
|
9453
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
9477
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9454
9478
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
9455
9479
|
navToSearchString({ input, assembly, }: {
|
|
9456
9480
|
input: string;
|
|
@@ -9458,8 +9482,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9458
9482
|
}): Promise<void>;
|
|
9459
9483
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
9460
9484
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
9461
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
9462
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
9485
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
9486
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
9463
9487
|
} & {
|
|
9464
9488
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
9465
9489
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -9495,7 +9519,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9495
9519
|
} | undefined;
|
|
9496
9520
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9497
9521
|
} & {
|
|
9498
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
9522
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
9499
9523
|
} & {
|
|
9500
9524
|
afterCreate(): void;
|
|
9501
9525
|
afterAttach(): void;
|
|
@@ -9518,10 +9542,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9518
9542
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9519
9543
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9520
9544
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
9521
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9545
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
9522
9546
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9523
9547
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9524
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9548
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
9525
9549
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
9526
9550
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9527
9551
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -9541,10 +9565,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9541
9565
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9542
9566
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9543
9567
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
9544
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9568
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
9545
9569
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9546
9570
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9547
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9571
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
9548
9572
|
}>>>)[];
|
|
9549
9573
|
renderProps(): {
|
|
9550
9574
|
theme: any;
|
|
@@ -9568,10 +9592,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9568
9592
|
showCytobandsSetting: boolean;
|
|
9569
9593
|
trackLabels: string;
|
|
9570
9594
|
showGridlines: boolean;
|
|
9571
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9595
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
9572
9596
|
colorByCDS: boolean;
|
|
9573
9597
|
showTrackOutlines: boolean;
|
|
9574
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
9598
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
9575
9599
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
9576
9600
|
width: number;
|
|
9577
9601
|
} & {
|
|
@@ -9591,10 +9615,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9591
9615
|
trackRefs: Record<string, HTMLDivElement>;
|
|
9592
9616
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9593
9617
|
coarseTotalBp: number;
|
|
9594
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9595
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9618
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9619
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9596
9620
|
isScalebarRefNameMenuOpen: boolean;
|
|
9597
9621
|
scalebarRefNameClickPending: boolean;
|
|
9622
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
9598
9623
|
} & {
|
|
9599
9624
|
readonly pinnedTracks: any[];
|
|
9600
9625
|
readonly unpinnedTracks: any[];
|
|
@@ -9654,12 +9679,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9654
9679
|
setHideHeaderOverview(b: boolean): void;
|
|
9655
9680
|
setHideNoTracksActive(b: boolean): void;
|
|
9656
9681
|
setShowGridlines(b: boolean): void;
|
|
9657
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9658
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
9659
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9682
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9683
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
9684
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9685
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
9660
9686
|
scrollTo(offsetPx: number): number;
|
|
9661
9687
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
9662
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
9688
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9663
9689
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
9664
9690
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
9665
9691
|
horizontallyFlip(): void;
|
|
@@ -9676,7 +9702,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9676
9702
|
setShowCenterLine(b: boolean): void;
|
|
9677
9703
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
9678
9704
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
9679
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
9705
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
9680
9706
|
assemblyName: string;
|
|
9681
9707
|
refName: string;
|
|
9682
9708
|
start: number;
|
|
@@ -9691,8 +9717,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9691
9717
|
setScaleFactor(factor: number): void;
|
|
9692
9718
|
setTargetBpPerPx(target: number | undefined): void;
|
|
9693
9719
|
clearView(): void;
|
|
9694
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
9695
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
9720
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
9721
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
9696
9722
|
} & {
|
|
9697
9723
|
slide: (viewWidths: number) => void;
|
|
9698
9724
|
} & {
|
|
@@ -9717,7 +9743,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9717
9743
|
} & {
|
|
9718
9744
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
9719
9745
|
} & {
|
|
9720
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
9746
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9721
9747
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
9722
9748
|
navToSearchString({ input, assembly, }: {
|
|
9723
9749
|
input: string;
|
|
@@ -9725,8 +9751,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9725
9751
|
}): Promise<void>;
|
|
9726
9752
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
9727
9753
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
9728
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
9729
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
9754
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
9755
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
9730
9756
|
} & {
|
|
9731
9757
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
9732
9758
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -9762,7 +9788,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9762
9788
|
} | undefined;
|
|
9763
9789
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9764
9790
|
} & {
|
|
9765
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
9791
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
9766
9792
|
} & {
|
|
9767
9793
|
afterCreate(): void;
|
|
9768
9794
|
afterAttach(): void;
|
|
@@ -9785,10 +9811,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9785
9811
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9786
9812
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9787
9813
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
9788
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9814
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
9789
9815
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9790
9816
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
9791
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
9817
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
9792
9818
|
}, {
|
|
9793
9819
|
width: number;
|
|
9794
9820
|
} & {
|
|
@@ -9808,10 +9834,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9808
9834
|
trackRefs: Record<string, HTMLDivElement>;
|
|
9809
9835
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9810
9836
|
coarseTotalBp: number;
|
|
9811
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9812
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
9837
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9838
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
9813
9839
|
isScalebarRefNameMenuOpen: boolean;
|
|
9814
9840
|
scalebarRefNameClickPending: boolean;
|
|
9841
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
9815
9842
|
} & {
|
|
9816
9843
|
readonly pinnedTracks: any[];
|
|
9817
9844
|
readonly unpinnedTracks: any[];
|
|
@@ -9871,12 +9898,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9871
9898
|
setHideHeaderOverview(b: boolean): void;
|
|
9872
9899
|
setHideNoTracksActive(b: boolean): void;
|
|
9873
9900
|
setShowGridlines(b: boolean): void;
|
|
9874
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9875
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
9876
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
9901
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9902
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
9903
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
9904
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
9877
9905
|
scrollTo(offsetPx: number): number;
|
|
9878
9906
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
9879
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
9907
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9880
9908
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
9881
9909
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
9882
9910
|
horizontallyFlip(): void;
|
|
@@ -9893,7 +9921,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9893
9921
|
setShowCenterLine(b: boolean): void;
|
|
9894
9922
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
9895
9923
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
9896
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
9924
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
9897
9925
|
assemblyName: string;
|
|
9898
9926
|
refName: string;
|
|
9899
9927
|
start: number;
|
|
@@ -9908,8 +9936,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9908
9936
|
setScaleFactor(factor: number): void;
|
|
9909
9937
|
setTargetBpPerPx(target: number | undefined): void;
|
|
9910
9938
|
clearView(): void;
|
|
9911
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
9912
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
9939
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
9940
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
9913
9941
|
} & {
|
|
9914
9942
|
slide: (viewWidths: number) => void;
|
|
9915
9943
|
} & {
|
|
@@ -9934,7 +9962,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9934
9962
|
} & {
|
|
9935
9963
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
9936
9964
|
} & {
|
|
9937
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
9965
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
9938
9966
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
9939
9967
|
navToSearchString({ input, assembly, }: {
|
|
9940
9968
|
input: string;
|
|
@@ -9942,8 +9970,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9942
9970
|
}): Promise<void>;
|
|
9943
9971
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
9944
9972
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
9945
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
9946
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
9973
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
9974
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
9947
9975
|
} & {
|
|
9948
9976
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
9949
9977
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -9979,7 +10007,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
9979
10007
|
} | undefined;
|
|
9980
10008
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
9981
10009
|
} & {
|
|
9982
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
10010
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
9983
10011
|
} & {
|
|
9984
10012
|
afterCreate(): void;
|
|
9985
10013
|
afterAttach(): void;
|
|
@@ -10002,10 +10030,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
10002
10030
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10003
10031
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
10004
10032
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
10005
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
10033
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
10006
10034
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10007
10035
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10008
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
10036
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
10009
10037
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
10010
10038
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
10011
10039
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -10025,10 +10053,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
10025
10053
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10026
10054
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
10027
10055
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
10028
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
10056
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
10029
10057
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10030
10058
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
10031
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
10059
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
10032
10060
|
}>>>;
|
|
10033
10061
|
removeView(): void;
|
|
10034
10062
|
} & {
|
|
@@ -12099,9 +12127,9 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12099
12127
|
} & {
|
|
12100
12128
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
12101
12129
|
} & {
|
|
12102
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
12103
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
12104
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
12130
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
12131
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
12132
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
12105
12133
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
12106
12134
|
removeSnackbarMessage(message: string): void;
|
|
12107
12135
|
} & {
|
|
@@ -12128,10 +12156,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12128
12156
|
showCytobandsSetting: boolean;
|
|
12129
12157
|
trackLabels: string;
|
|
12130
12158
|
showGridlines: boolean;
|
|
12131
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12159
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
12132
12160
|
colorByCDS: boolean;
|
|
12133
12161
|
showTrackOutlines: boolean;
|
|
12134
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
12162
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
12135
12163
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
12136
12164
|
width: number;
|
|
12137
12165
|
} & {
|
|
@@ -12151,10 +12179,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12151
12179
|
trackRefs: Record<string, HTMLDivElement>;
|
|
12152
12180
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12153
12181
|
coarseTotalBp: number;
|
|
12154
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12155
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12182
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12183
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12156
12184
|
isScalebarRefNameMenuOpen: boolean;
|
|
12157
12185
|
scalebarRefNameClickPending: boolean;
|
|
12186
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
12158
12187
|
} & {
|
|
12159
12188
|
readonly pinnedTracks: any[];
|
|
12160
12189
|
readonly unpinnedTracks: any[];
|
|
@@ -12214,12 +12243,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12214
12243
|
setHideHeaderOverview(b: boolean): void;
|
|
12215
12244
|
setHideNoTracksActive(b: boolean): void;
|
|
12216
12245
|
setShowGridlines(b: boolean): void;
|
|
12217
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12218
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
12219
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12246
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12247
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
12248
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12249
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
12220
12250
|
scrollTo(offsetPx: number): number;
|
|
12221
12251
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
12222
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
12252
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12223
12253
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
12224
12254
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
12225
12255
|
horizontallyFlip(): void;
|
|
@@ -12236,7 +12266,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12236
12266
|
setShowCenterLine(b: boolean): void;
|
|
12237
12267
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
12238
12268
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
12239
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
12269
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
12240
12270
|
assemblyName: string;
|
|
12241
12271
|
refName: string;
|
|
12242
12272
|
start: number;
|
|
@@ -12251,8 +12281,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12251
12281
|
setScaleFactor(factor: number): void;
|
|
12252
12282
|
setTargetBpPerPx(target: number | undefined): void;
|
|
12253
12283
|
clearView(): void;
|
|
12254
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
12255
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
12284
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
12285
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
12256
12286
|
} & {
|
|
12257
12287
|
slide: (viewWidths: number) => void;
|
|
12258
12288
|
} & {
|
|
@@ -12277,7 +12307,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12277
12307
|
} & {
|
|
12278
12308
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
12279
12309
|
} & {
|
|
12280
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
12310
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12281
12311
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
12282
12312
|
navToSearchString({ input, assembly, }: {
|
|
12283
12313
|
input: string;
|
|
@@ -12285,8 +12315,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12285
12315
|
}): Promise<void>;
|
|
12286
12316
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
12287
12317
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
12288
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
12289
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
12318
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
12319
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
12290
12320
|
} & {
|
|
12291
12321
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
12292
12322
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -12322,7 +12352,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12322
12352
|
} | undefined;
|
|
12323
12353
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12324
12354
|
} & {
|
|
12325
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
12355
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
12326
12356
|
} & {
|
|
12327
12357
|
afterCreate(): void;
|
|
12328
12358
|
afterAttach(): void;
|
|
@@ -12345,10 +12375,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12345
12375
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12346
12376
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
12347
12377
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
12348
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12378
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
12349
12379
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12350
12380
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12351
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12381
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
12352
12382
|
}, {
|
|
12353
12383
|
width: number;
|
|
12354
12384
|
} & {
|
|
@@ -12368,10 +12398,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12368
12398
|
trackRefs: Record<string, HTMLDivElement>;
|
|
12369
12399
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12370
12400
|
coarseTotalBp: number;
|
|
12371
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12372
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12401
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12402
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12373
12403
|
isScalebarRefNameMenuOpen: boolean;
|
|
12374
12404
|
scalebarRefNameClickPending: boolean;
|
|
12405
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
12375
12406
|
} & {
|
|
12376
12407
|
readonly pinnedTracks: any[];
|
|
12377
12408
|
readonly unpinnedTracks: any[];
|
|
@@ -12431,12 +12462,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12431
12462
|
setHideHeaderOverview(b: boolean): void;
|
|
12432
12463
|
setHideNoTracksActive(b: boolean): void;
|
|
12433
12464
|
setShowGridlines(b: boolean): void;
|
|
12434
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12435
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
12436
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12465
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12466
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
12467
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12468
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
12437
12469
|
scrollTo(offsetPx: number): number;
|
|
12438
12470
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
12439
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
12471
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12440
12472
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
12441
12473
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
12442
12474
|
horizontallyFlip(): void;
|
|
@@ -12453,7 +12485,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12453
12485
|
setShowCenterLine(b: boolean): void;
|
|
12454
12486
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
12455
12487
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
12456
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
12488
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
12457
12489
|
assemblyName: string;
|
|
12458
12490
|
refName: string;
|
|
12459
12491
|
start: number;
|
|
@@ -12468,8 +12500,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12468
12500
|
setScaleFactor(factor: number): void;
|
|
12469
12501
|
setTargetBpPerPx(target: number | undefined): void;
|
|
12470
12502
|
clearView(): void;
|
|
12471
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
12472
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
12503
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
12504
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
12473
12505
|
} & {
|
|
12474
12506
|
slide: (viewWidths: number) => void;
|
|
12475
12507
|
} & {
|
|
@@ -12494,7 +12526,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12494
12526
|
} & {
|
|
12495
12527
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
12496
12528
|
} & {
|
|
12497
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
12529
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12498
12530
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
12499
12531
|
navToSearchString({ input, assembly, }: {
|
|
12500
12532
|
input: string;
|
|
@@ -12502,8 +12534,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12502
12534
|
}): Promise<void>;
|
|
12503
12535
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
12504
12536
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
12505
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
12506
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
12537
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
12538
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
12507
12539
|
} & {
|
|
12508
12540
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
12509
12541
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -12539,7 +12571,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12539
12571
|
} | undefined;
|
|
12540
12572
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12541
12573
|
} & {
|
|
12542
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
12574
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
12543
12575
|
} & {
|
|
12544
12576
|
afterCreate(): void;
|
|
12545
12577
|
afterAttach(): void;
|
|
@@ -12562,10 +12594,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12562
12594
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12563
12595
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
12564
12596
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
12565
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12597
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
12566
12598
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12567
12599
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12568
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12600
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
12569
12601
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
12570
12602
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
12571
12603
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -12585,10 +12617,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12585
12617
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12586
12618
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
12587
12619
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
12588
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12620
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
12589
12621
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12590
12622
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12591
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12623
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
12592
12624
|
}>>>)[];
|
|
12593
12625
|
renderProps(): {
|
|
12594
12626
|
theme: any;
|
|
@@ -12612,10 +12644,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12612
12644
|
showCytobandsSetting: boolean;
|
|
12613
12645
|
trackLabels: string;
|
|
12614
12646
|
showGridlines: boolean;
|
|
12615
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12647
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
12616
12648
|
colorByCDS: boolean;
|
|
12617
12649
|
showTrackOutlines: boolean;
|
|
12618
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
12650
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
12619
12651
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
12620
12652
|
width: number;
|
|
12621
12653
|
} & {
|
|
@@ -12635,10 +12667,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12635
12667
|
trackRefs: Record<string, HTMLDivElement>;
|
|
12636
12668
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12637
12669
|
coarseTotalBp: number;
|
|
12638
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12639
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12670
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12671
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12640
12672
|
isScalebarRefNameMenuOpen: boolean;
|
|
12641
12673
|
scalebarRefNameClickPending: boolean;
|
|
12674
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
12642
12675
|
} & {
|
|
12643
12676
|
readonly pinnedTracks: any[];
|
|
12644
12677
|
readonly unpinnedTracks: any[];
|
|
@@ -12698,12 +12731,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12698
12731
|
setHideHeaderOverview(b: boolean): void;
|
|
12699
12732
|
setHideNoTracksActive(b: boolean): void;
|
|
12700
12733
|
setShowGridlines(b: boolean): void;
|
|
12701
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12702
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
12703
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12734
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12735
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
12736
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12737
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
12704
12738
|
scrollTo(offsetPx: number): number;
|
|
12705
12739
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
12706
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
12740
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12707
12741
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
12708
12742
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
12709
12743
|
horizontallyFlip(): void;
|
|
@@ -12720,7 +12754,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12720
12754
|
setShowCenterLine(b: boolean): void;
|
|
12721
12755
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
12722
12756
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
12723
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
12757
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
12724
12758
|
assemblyName: string;
|
|
12725
12759
|
refName: string;
|
|
12726
12760
|
start: number;
|
|
@@ -12735,8 +12769,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12735
12769
|
setScaleFactor(factor: number): void;
|
|
12736
12770
|
setTargetBpPerPx(target: number | undefined): void;
|
|
12737
12771
|
clearView(): void;
|
|
12738
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
12739
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
12772
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
12773
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
12740
12774
|
} & {
|
|
12741
12775
|
slide: (viewWidths: number) => void;
|
|
12742
12776
|
} & {
|
|
@@ -12761,7 +12795,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12761
12795
|
} & {
|
|
12762
12796
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
12763
12797
|
} & {
|
|
12764
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
12798
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12765
12799
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
12766
12800
|
navToSearchString({ input, assembly, }: {
|
|
12767
12801
|
input: string;
|
|
@@ -12769,8 +12803,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12769
12803
|
}): Promise<void>;
|
|
12770
12804
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
12771
12805
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
12772
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
12773
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
12806
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
12807
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
12774
12808
|
} & {
|
|
12775
12809
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
12776
12810
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -12806,7 +12840,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12806
12840
|
} | undefined;
|
|
12807
12841
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12808
12842
|
} & {
|
|
12809
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
12843
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
12810
12844
|
} & {
|
|
12811
12845
|
afterCreate(): void;
|
|
12812
12846
|
afterAttach(): void;
|
|
@@ -12829,10 +12863,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12829
12863
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12830
12864
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
12831
12865
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
12832
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12866
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
12833
12867
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12834
12868
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
12835
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
12869
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
12836
12870
|
}, {
|
|
12837
12871
|
width: number;
|
|
12838
12872
|
} & {
|
|
@@ -12852,10 +12886,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12852
12886
|
trackRefs: Record<string, HTMLDivElement>;
|
|
12853
12887
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
12854
12888
|
coarseTotalBp: number;
|
|
12855
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12856
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
12889
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12890
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
12857
12891
|
isScalebarRefNameMenuOpen: boolean;
|
|
12858
12892
|
scalebarRefNameClickPending: boolean;
|
|
12893
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
12859
12894
|
} & {
|
|
12860
12895
|
readonly pinnedTracks: any[];
|
|
12861
12896
|
readonly unpinnedTracks: any[];
|
|
@@ -12915,12 +12950,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12915
12950
|
setHideHeaderOverview(b: boolean): void;
|
|
12916
12951
|
setHideNoTracksActive(b: boolean): void;
|
|
12917
12952
|
setShowGridlines(b: boolean): void;
|
|
12918
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12919
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
12920
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
12953
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12954
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
12955
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
12956
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
12921
12957
|
scrollTo(offsetPx: number): number;
|
|
12922
12958
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
12923
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
12959
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12924
12960
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
12925
12961
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
12926
12962
|
horizontallyFlip(): void;
|
|
@@ -12937,7 +12973,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12937
12973
|
setShowCenterLine(b: boolean): void;
|
|
12938
12974
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
12939
12975
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
12940
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
12976
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
12941
12977
|
assemblyName: string;
|
|
12942
12978
|
refName: string;
|
|
12943
12979
|
start: number;
|
|
@@ -12952,8 +12988,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12952
12988
|
setScaleFactor(factor: number): void;
|
|
12953
12989
|
setTargetBpPerPx(target: number | undefined): void;
|
|
12954
12990
|
clearView(): void;
|
|
12955
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
12956
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
12991
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
12992
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
12957
12993
|
} & {
|
|
12958
12994
|
slide: (viewWidths: number) => void;
|
|
12959
12995
|
} & {
|
|
@@ -12978,7 +13014,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12978
13014
|
} & {
|
|
12979
13015
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
12980
13016
|
} & {
|
|
12981
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
13017
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
12982
13018
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
12983
13019
|
navToSearchString({ input, assembly, }: {
|
|
12984
13020
|
input: string;
|
|
@@ -12986,8 +13022,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
12986
13022
|
}): Promise<void>;
|
|
12987
13023
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
12988
13024
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
12989
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
12990
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
13025
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
13026
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
12991
13027
|
} & {
|
|
12992
13028
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
12993
13029
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -13023,7 +13059,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
13023
13059
|
} | undefined;
|
|
13024
13060
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
13025
13061
|
} & {
|
|
13026
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
13062
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
13027
13063
|
} & {
|
|
13028
13064
|
afterCreate(): void;
|
|
13029
13065
|
afterAttach(): void;
|
|
@@ -13046,10 +13082,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
13046
13082
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13047
13083
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
13048
13084
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
13049
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
13085
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
13050
13086
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13051
13087
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13052
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
13088
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
13053
13089
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
13054
13090
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
13055
13091
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -13069,10 +13105,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
13069
13105
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13070
13106
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
13071
13107
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
13072
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
13108
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
13073
13109
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13074
13110
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
13075
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
13111
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
13076
13112
|
}>>>;
|
|
13077
13113
|
removeView(): void;
|
|
13078
13114
|
} & {
|
|
@@ -15380,9 +15416,9 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15380
15416
|
} & {
|
|
15381
15417
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
15382
15418
|
} & {
|
|
15383
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
15384
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
15385
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
15419
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
15420
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
15421
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
15386
15422
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
15387
15423
|
removeSnackbarMessage(message: string): void;
|
|
15388
15424
|
} & {
|
|
@@ -15409,10 +15445,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15409
15445
|
showCytobandsSetting: boolean;
|
|
15410
15446
|
trackLabels: string;
|
|
15411
15447
|
showGridlines: boolean;
|
|
15412
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15448
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
15413
15449
|
colorByCDS: boolean;
|
|
15414
15450
|
showTrackOutlines: boolean;
|
|
15415
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
15451
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
15416
15452
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
15417
15453
|
width: number;
|
|
15418
15454
|
} & {
|
|
@@ -15432,10 +15468,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15432
15468
|
trackRefs: Record<string, HTMLDivElement>;
|
|
15433
15469
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
15434
15470
|
coarseTotalBp: number;
|
|
15435
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15436
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15471
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15472
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15437
15473
|
isScalebarRefNameMenuOpen: boolean;
|
|
15438
15474
|
scalebarRefNameClickPending: boolean;
|
|
15475
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
15439
15476
|
} & {
|
|
15440
15477
|
readonly pinnedTracks: any[];
|
|
15441
15478
|
readonly unpinnedTracks: any[];
|
|
@@ -15495,12 +15532,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15495
15532
|
setHideHeaderOverview(b: boolean): void;
|
|
15496
15533
|
setHideNoTracksActive(b: boolean): void;
|
|
15497
15534
|
setShowGridlines(b: boolean): void;
|
|
15498
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
15499
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
15500
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
15535
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
15536
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
15537
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
15538
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
15501
15539
|
scrollTo(offsetPx: number): number;
|
|
15502
15540
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
15503
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
15541
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
15504
15542
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
15505
15543
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
15506
15544
|
horizontallyFlip(): void;
|
|
@@ -15517,7 +15555,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15517
15555
|
setShowCenterLine(b: boolean): void;
|
|
15518
15556
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
15519
15557
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
15520
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
15558
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
15521
15559
|
assemblyName: string;
|
|
15522
15560
|
refName: string;
|
|
15523
15561
|
start: number;
|
|
@@ -15532,8 +15570,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15532
15570
|
setScaleFactor(factor: number): void;
|
|
15533
15571
|
setTargetBpPerPx(target: number | undefined): void;
|
|
15534
15572
|
clearView(): void;
|
|
15535
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
15536
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
15573
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
15574
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
15537
15575
|
} & {
|
|
15538
15576
|
slide: (viewWidths: number) => void;
|
|
15539
15577
|
} & {
|
|
@@ -15558,7 +15596,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15558
15596
|
} & {
|
|
15559
15597
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
15560
15598
|
} & {
|
|
15561
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
15599
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
15562
15600
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
15563
15601
|
navToSearchString({ input, assembly, }: {
|
|
15564
15602
|
input: string;
|
|
@@ -15566,8 +15604,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15566
15604
|
}): Promise<void>;
|
|
15567
15605
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
15568
15606
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
15569
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
15570
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
15607
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
15608
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
15571
15609
|
} & {
|
|
15572
15610
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
15573
15611
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -15603,7 +15641,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15603
15641
|
} | undefined;
|
|
15604
15642
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
15605
15643
|
} & {
|
|
15606
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
15644
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
15607
15645
|
} & {
|
|
15608
15646
|
afterCreate(): void;
|
|
15609
15647
|
afterAttach(): void;
|
|
@@ -15626,10 +15664,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15626
15664
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15627
15665
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
15628
15666
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
15629
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15667
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
15630
15668
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15631
15669
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15632
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15670
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
15633
15671
|
}, {
|
|
15634
15672
|
width: number;
|
|
15635
15673
|
} & {
|
|
@@ -15649,10 +15687,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15649
15687
|
trackRefs: Record<string, HTMLDivElement>;
|
|
15650
15688
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
15651
15689
|
coarseTotalBp: number;
|
|
15652
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15653
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15690
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15691
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15654
15692
|
isScalebarRefNameMenuOpen: boolean;
|
|
15655
15693
|
scalebarRefNameClickPending: boolean;
|
|
15694
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
15656
15695
|
} & {
|
|
15657
15696
|
readonly pinnedTracks: any[];
|
|
15658
15697
|
readonly unpinnedTracks: any[];
|
|
@@ -15712,12 +15751,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15712
15751
|
setHideHeaderOverview(b: boolean): void;
|
|
15713
15752
|
setHideNoTracksActive(b: boolean): void;
|
|
15714
15753
|
setShowGridlines(b: boolean): void;
|
|
15715
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
15716
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
15717
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
15754
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
15755
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
15756
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
15757
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
15718
15758
|
scrollTo(offsetPx: number): number;
|
|
15719
15759
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
15720
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
15760
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
15721
15761
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
15722
15762
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
15723
15763
|
horizontallyFlip(): void;
|
|
@@ -15734,7 +15774,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15734
15774
|
setShowCenterLine(b: boolean): void;
|
|
15735
15775
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
15736
15776
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
15737
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
15777
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
15738
15778
|
assemblyName: string;
|
|
15739
15779
|
refName: string;
|
|
15740
15780
|
start: number;
|
|
@@ -15749,8 +15789,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15749
15789
|
setScaleFactor(factor: number): void;
|
|
15750
15790
|
setTargetBpPerPx(target: number | undefined): void;
|
|
15751
15791
|
clearView(): void;
|
|
15752
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
15753
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
15792
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
15793
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
15754
15794
|
} & {
|
|
15755
15795
|
slide: (viewWidths: number) => void;
|
|
15756
15796
|
} & {
|
|
@@ -15775,7 +15815,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15775
15815
|
} & {
|
|
15776
15816
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
15777
15817
|
} & {
|
|
15778
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
15818
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
15779
15819
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
15780
15820
|
navToSearchString({ input, assembly, }: {
|
|
15781
15821
|
input: string;
|
|
@@ -15783,8 +15823,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15783
15823
|
}): Promise<void>;
|
|
15784
15824
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
15785
15825
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
15786
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
15787
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
15826
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
15827
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
15788
15828
|
} & {
|
|
15789
15829
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
15790
15830
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -15820,7 +15860,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15820
15860
|
} | undefined;
|
|
15821
15861
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
15822
15862
|
} & {
|
|
15823
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
15863
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
15824
15864
|
} & {
|
|
15825
15865
|
afterCreate(): void;
|
|
15826
15866
|
afterAttach(): void;
|
|
@@ -15843,10 +15883,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15843
15883
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15844
15884
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
15845
15885
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
15846
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15886
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
15847
15887
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15848
15888
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15849
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15889
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
15850
15890
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
15851
15891
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
15852
15892
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -15866,10 +15906,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15866
15906
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15867
15907
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
15868
15908
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
15869
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15909
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
15870
15910
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15871
15911
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
15872
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15912
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
15873
15913
|
}>>>)[];
|
|
15874
15914
|
renderProps(): {
|
|
15875
15915
|
theme: any;
|
|
@@ -15893,10 +15933,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15893
15933
|
showCytobandsSetting: boolean;
|
|
15894
15934
|
trackLabels: string;
|
|
15895
15935
|
showGridlines: boolean;
|
|
15896
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
15936
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
15897
15937
|
colorByCDS: boolean;
|
|
15898
15938
|
showTrackOutlines: boolean;
|
|
15899
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
15939
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
15900
15940
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
15901
15941
|
width: number;
|
|
15902
15942
|
} & {
|
|
@@ -15916,10 +15956,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15916
15956
|
trackRefs: Record<string, HTMLDivElement>;
|
|
15917
15957
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
15918
15958
|
coarseTotalBp: number;
|
|
15919
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15920
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
15959
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15960
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
15921
15961
|
isScalebarRefNameMenuOpen: boolean;
|
|
15922
15962
|
scalebarRefNameClickPending: boolean;
|
|
15963
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
15923
15964
|
} & {
|
|
15924
15965
|
readonly pinnedTracks: any[];
|
|
15925
15966
|
readonly unpinnedTracks: any[];
|
|
@@ -15979,12 +16020,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
15979
16020
|
setHideHeaderOverview(b: boolean): void;
|
|
15980
16021
|
setHideNoTracksActive(b: boolean): void;
|
|
15981
16022
|
setShowGridlines(b: boolean): void;
|
|
15982
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
15983
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
15984
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
16023
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
16024
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
16025
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
16026
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
15985
16027
|
scrollTo(offsetPx: number): number;
|
|
15986
16028
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
15987
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
16029
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
15988
16030
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
15989
16031
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
15990
16032
|
horizontallyFlip(): void;
|
|
@@ -16001,7 +16043,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16001
16043
|
setShowCenterLine(b: boolean): void;
|
|
16002
16044
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
16003
16045
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
16004
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
16046
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
16005
16047
|
assemblyName: string;
|
|
16006
16048
|
refName: string;
|
|
16007
16049
|
start: number;
|
|
@@ -16016,8 +16058,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16016
16058
|
setScaleFactor(factor: number): void;
|
|
16017
16059
|
setTargetBpPerPx(target: number | undefined): void;
|
|
16018
16060
|
clearView(): void;
|
|
16019
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
16020
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
16061
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
16062
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
16021
16063
|
} & {
|
|
16022
16064
|
slide: (viewWidths: number) => void;
|
|
16023
16065
|
} & {
|
|
@@ -16042,7 +16084,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16042
16084
|
} & {
|
|
16043
16085
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
16044
16086
|
} & {
|
|
16045
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
16087
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
16046
16088
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
16047
16089
|
navToSearchString({ input, assembly, }: {
|
|
16048
16090
|
input: string;
|
|
@@ -16050,8 +16092,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16050
16092
|
}): Promise<void>;
|
|
16051
16093
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
16052
16094
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
16053
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
16054
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
16095
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
16096
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
16055
16097
|
} & {
|
|
16056
16098
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
16057
16099
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -16087,7 +16129,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16087
16129
|
} | undefined;
|
|
16088
16130
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
16089
16131
|
} & {
|
|
16090
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
16132
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
16091
16133
|
} & {
|
|
16092
16134
|
afterCreate(): void;
|
|
16093
16135
|
afterAttach(): void;
|
|
@@ -16110,10 +16152,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16110
16152
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16111
16153
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
16112
16154
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
16113
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16155
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
16114
16156
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16115
16157
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16116
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16158
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
16117
16159
|
}, {
|
|
16118
16160
|
width: number;
|
|
16119
16161
|
} & {
|
|
@@ -16133,10 +16175,11 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16133
16175
|
trackRefs: Record<string, HTMLDivElement>;
|
|
16134
16176
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
16135
16177
|
coarseTotalBp: number;
|
|
16136
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
16137
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
16178
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
16179
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
16138
16180
|
isScalebarRefNameMenuOpen: boolean;
|
|
16139
16181
|
scalebarRefNameClickPending: boolean;
|
|
16182
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
16140
16183
|
} & {
|
|
16141
16184
|
readonly pinnedTracks: any[];
|
|
16142
16185
|
readonly unpinnedTracks: any[];
|
|
@@ -16196,12 +16239,13 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16196
16239
|
setHideHeaderOverview(b: boolean): void;
|
|
16197
16240
|
setHideNoTracksActive(b: boolean): void;
|
|
16198
16241
|
setShowGridlines(b: boolean): void;
|
|
16199
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
16200
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
16201
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
16242
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
16243
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
16244
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
16245
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
16202
16246
|
scrollTo(offsetPx: number): number;
|
|
16203
16247
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
16204
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
16248
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
16205
16249
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
16206
16250
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
16207
16251
|
horizontallyFlip(): void;
|
|
@@ -16218,7 +16262,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16218
16262
|
setShowCenterLine(b: boolean): void;
|
|
16219
16263
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
16220
16264
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
16221
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
16265
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
16222
16266
|
assemblyName: string;
|
|
16223
16267
|
refName: string;
|
|
16224
16268
|
start: number;
|
|
@@ -16233,8 +16277,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16233
16277
|
setScaleFactor(factor: number): void;
|
|
16234
16278
|
setTargetBpPerPx(target: number | undefined): void;
|
|
16235
16279
|
clearView(): void;
|
|
16236
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
16237
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
16280
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
16281
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
16238
16282
|
} & {
|
|
16239
16283
|
slide: (viewWidths: number) => void;
|
|
16240
16284
|
} & {
|
|
@@ -16259,7 +16303,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16259
16303
|
} & {
|
|
16260
16304
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
16261
16305
|
} & {
|
|
16262
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
16306
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
16263
16307
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
16264
16308
|
navToSearchString({ input, assembly, }: {
|
|
16265
16309
|
input: string;
|
|
@@ -16267,8 +16311,8 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16267
16311
|
}): Promise<void>;
|
|
16268
16312
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
16269
16313
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
16270
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
16271
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
16314
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
16315
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
16272
16316
|
} & {
|
|
16273
16317
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
16274
16318
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -16304,7 +16348,7 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16304
16348
|
} | undefined;
|
|
16305
16349
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
16306
16350
|
} & {
|
|
16307
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
16351
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
16308
16352
|
} & {
|
|
16309
16353
|
afterCreate(): void;
|
|
16310
16354
|
afterAttach(): void;
|
|
@@ -16327,10 +16371,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16327
16371
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16328
16372
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
16329
16373
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
16330
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16374
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
16331
16375
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16332
16376
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16333
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16377
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
16334
16378
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
16335
16379
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
16336
16380
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -16350,10 +16394,10 @@ export default function createViewState(opts: ViewStateOptions): {
|
|
|
16350
16394
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16351
16395
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
16352
16396
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
16353
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16397
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
16354
16398
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16355
16399
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16356
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
16400
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
16357
16401
|
}>>>;
|
|
16358
16402
|
removeView(): void;
|
|
16359
16403
|
} & {
|