@jbrowse/react-linear-genome-view2 4.0.4 → 4.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (10) hide show
  1. package/dist/react-linear-genome-view.umd.production.min.js +229 -0
  2. package/dist/react-linear-genome-view.umd.production.min.js.LICENSE.txt +145 -0
  3. package/dist/react-linear-genome-view.umd.production.min.js.map +1 -0
  4. package/esm/createModel/createModel.d.ts +158 -142
  5. package/esm/createModel/createSessionModel.d.ts +79 -71
  6. package/esm/createViewState.d.ts +433 -389
  7. package/esm/version.d.ts +1 -1
  8. package/esm/version.js +1 -1
  9. package/package.json +46 -22
  10. package/LICENSE +0 -201
package/esm/createModel/createModel.d.ts CHANGED
@@ -1855,9 +1855,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  } & {
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  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
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  } & {
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- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
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- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
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- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
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+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
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+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
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+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
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  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
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  removeSnackbarMessage(message: string): void;
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  } & {
@@ -1884,10 +1884,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  showCytobandsSetting: boolean;
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  trackLabels: string;
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  showGridlines: boolean;
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- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
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+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
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  colorByCDS: boolean;
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  showTrackOutlines: boolean;
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- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
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+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
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  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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  width: number;
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  } & {
@@ -1907,10 +1907,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
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- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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  isScalebarRefNameMenuOpen: boolean;
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  scalebarRefNameClickPending: boolean;
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+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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  } & {
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  readonly pinnedTracks: any[];
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  readonly unpinnedTracks: any[];
@@ -1970,12 +1971,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
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- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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  setNewView(bpPerPx: number, offsetPx: number): void;
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  horizontallyFlip(): void;
@@ -1992,7 +1994,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
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+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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  assemblyName: string;
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  refName: string;
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  start: number;
@@ -2007,8 +2009,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setScaleFactor(factor: number): void;
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  setTargetBpPerPx(target: number | undefined): void;
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  clearView(): void;
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- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
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- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
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+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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  } & {
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  slide: (viewWidths: number) => void;
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  } & {
@@ -2033,7 +2035,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  } & {
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  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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  } & {
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- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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  navToSearchString({ input, assembly, }: {
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  input: string;
@@ -2041,8 +2043,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  }): Promise<void>;
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  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
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- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
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+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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  } & {
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  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -2078,7 +2080,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  } | undefined;
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  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  } & {
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- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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  } & {
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  afterCreate(): void;
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  afterAttach(): void;
@@ -2101,10 +2103,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
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+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
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+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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  }, {
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  width: number;
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  } & {
@@ -2124,10 +2126,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
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- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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  isScalebarRefNameMenuOpen: boolean;
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  scalebarRefNameClickPending: boolean;
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+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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  } & {
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  readonly pinnedTracks: any[];
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  readonly unpinnedTracks: any[];
@@ -2187,12 +2190,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
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- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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  setNewView(bpPerPx: number, offsetPx: number): void;
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  horizontallyFlip(): void;
@@ -2209,7 +2213,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
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+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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  assemblyName: string;
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  refName: string;
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  start: number;
@@ -2224,8 +2228,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  setScaleFactor(factor: number): void;
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  setTargetBpPerPx(target: number | undefined): void;
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  clearView(): void;
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- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
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- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
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+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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  } & {
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  slide: (viewWidths: number) => void;
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  } & {
@@ -2250,7 +2254,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  } & {
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  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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  } & {
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- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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  navToSearchString({ input, assembly, }: {
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  input: string;
@@ -2258,8 +2262,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  }): Promise<void>;
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  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
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- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
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+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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  } & {
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  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -2295,7 +2299,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  } | undefined;
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  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  } & {
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- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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  } & {
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  afterCreate(): void;
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  afterAttach(): void;
@@ -2318,10 +2322,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
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+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2322
2326
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2323
2327
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2324
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2328
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2325
2329
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
2326
2330
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2327
2331
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -2341,10 +2345,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2341
2345
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2342
2346
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2343
2347
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2344
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2348
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2345
2349
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2346
2350
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2347
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2351
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2348
2352
  }>>>)[];
2349
2353
  renderProps(): {
2350
2354
  theme: any;
@@ -2368,10 +2372,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2368
2372
  showCytobandsSetting: boolean;
2369
2373
  trackLabels: string;
2370
2374
  showGridlines: boolean;
2371
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
2375
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
2372
2376
  colorByCDS: boolean;
2373
2377
  showTrackOutlines: boolean;
2374
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
2378
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
2375
2379
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2376
2380
  width: number;
2377
2381
  } & {
@@ -2391,10 +2395,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2391
2395
  trackRefs: Record<string, HTMLDivElement>;
2392
2396
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2393
2397
  coarseTotalBp: number;
2394
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2395
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2398
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2399
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2396
2400
  isScalebarRefNameMenuOpen: boolean;
2397
2401
  scalebarRefNameClickPending: boolean;
2402
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
2398
2403
  } & {
2399
2404
  readonly pinnedTracks: any[];
2400
2405
  readonly unpinnedTracks: any[];
@@ -2454,12 +2459,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2454
2459
  setHideHeaderOverview(b: boolean): void;
2455
2460
  setHideNoTracksActive(b: boolean): void;
2456
2461
  setShowGridlines(b: boolean): void;
2457
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2458
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
2459
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2462
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2463
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
2464
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2465
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
2460
2466
  scrollTo(offsetPx: number): number;
2461
2467
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
2462
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2468
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2463
2469
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
2464
2470
  setNewView(bpPerPx: number, offsetPx: number): void;
2465
2471
  horizontallyFlip(): void;
@@ -2476,7 +2482,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2476
2482
  setShowCenterLine(b: boolean): void;
2477
2483
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
2478
2484
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
2479
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
2485
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
2480
2486
  assemblyName: string;
2481
2487
  refName: string;
2482
2488
  start: number;
@@ -2491,8 +2497,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2491
2497
  setScaleFactor(factor: number): void;
2492
2498
  setTargetBpPerPx(target: number | undefined): void;
2493
2499
  clearView(): void;
2494
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
2495
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
2500
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
2501
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
2496
2502
  } & {
2497
2503
  slide: (viewWidths: number) => void;
2498
2504
  } & {
@@ -2517,7 +2523,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2517
2523
  } & {
2518
2524
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
2519
2525
  } & {
2520
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2526
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2521
2527
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
2522
2528
  navToSearchString({ input, assembly, }: {
2523
2529
  input: string;
@@ -2525,8 +2531,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2525
2531
  }): Promise<void>;
2526
2532
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
2527
2533
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
2528
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
2529
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
2534
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
2535
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
2530
2536
  } & {
2531
2537
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2532
2538
  bpToPx({ refName, coord, regionNumber, }: {
@@ -2562,7 +2568,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2562
2568
  } | undefined;
2563
2569
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2564
2570
  } & {
2565
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2571
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2566
2572
  } & {
2567
2573
  afterCreate(): void;
2568
2574
  afterAttach(): void;
@@ -2585,10 +2591,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2585
2591
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2586
2592
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2587
2593
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2588
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2594
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2589
2595
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2590
2596
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2591
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2597
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2592
2598
  }, {
2593
2599
  width: number;
2594
2600
  } & {
@@ -2608,10 +2614,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2608
2614
  trackRefs: Record<string, HTMLDivElement>;
2609
2615
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2610
2616
  coarseTotalBp: number;
2611
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2612
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2617
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2618
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2613
2619
  isScalebarRefNameMenuOpen: boolean;
2614
2620
  scalebarRefNameClickPending: boolean;
2621
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
2615
2622
  } & {
2616
2623
  readonly pinnedTracks: any[];
2617
2624
  readonly unpinnedTracks: any[];
@@ -2671,12 +2678,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2671
2678
  setHideHeaderOverview(b: boolean): void;
2672
2679
  setHideNoTracksActive(b: boolean): void;
2673
2680
  setShowGridlines(b: boolean): void;
2674
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2675
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
2676
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2681
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2682
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
2683
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2684
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
2677
2685
  scrollTo(offsetPx: number): number;
2678
2686
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
2679
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2687
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2680
2688
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
2681
2689
  setNewView(bpPerPx: number, offsetPx: number): void;
2682
2690
  horizontallyFlip(): void;
@@ -2693,7 +2701,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2693
2701
  setShowCenterLine(b: boolean): void;
2694
2702
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
2695
2703
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
2696
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
2704
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
2697
2705
  assemblyName: string;
2698
2706
  refName: string;
2699
2707
  start: number;
@@ -2708,8 +2716,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2708
2716
  setScaleFactor(factor: number): void;
2709
2717
  setTargetBpPerPx(target: number | undefined): void;
2710
2718
  clearView(): void;
2711
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
2712
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
2719
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
2720
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
2713
2721
  } & {
2714
2722
  slide: (viewWidths: number) => void;
2715
2723
  } & {
@@ -2734,7 +2742,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2734
2742
  } & {
2735
2743
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
2736
2744
  } & {
2737
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2745
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2738
2746
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
2739
2747
  navToSearchString({ input, assembly, }: {
2740
2748
  input: string;
@@ -2742,8 +2750,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2742
2750
  }): Promise<void>;
2743
2751
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
2744
2752
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
2745
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
2746
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
2753
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
2754
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
2747
2755
  } & {
2748
2756
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2749
2757
  bpToPx({ refName, coord, regionNumber, }: {
@@ -2779,7 +2787,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2779
2787
  } | undefined;
2780
2788
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2781
2789
  } & {
2782
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2790
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2783
2791
  } & {
2784
2792
  afterCreate(): void;
2785
2793
  afterAttach(): void;
@@ -2802,10 +2810,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2802
2810
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2803
2811
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2804
2812
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2805
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2813
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2806
2814
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2807
2815
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2808
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2816
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2809
2817
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
2810
2818
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2811
2819
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -2825,10 +2833,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
2825
2833
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2826
2834
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2827
2835
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2828
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2836
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2829
2837
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2830
2838
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2831
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2839
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2832
2840
  }>>>;
2833
2841
  removeView(): void;
2834
2842
  } & {
@@ -5136,9 +5144,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5136
5144
  } & {
5137
5145
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
5138
5146
  } & {
5139
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
5140
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
5141
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
5147
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
5148
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
5149
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
5142
5150
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
5143
5151
  removeSnackbarMessage(message: string): void;
5144
5152
  } & {
@@ -5165,10 +5173,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5165
5173
  showCytobandsSetting: boolean;
5166
5174
  trackLabels: string;
5167
5175
  showGridlines: boolean;
5168
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
5176
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
5169
5177
  colorByCDS: boolean;
5170
5178
  showTrackOutlines: boolean;
5171
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
5179
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
5172
5180
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
5173
5181
  width: number;
5174
5182
  } & {
@@ -5188,10 +5196,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5188
5196
  trackRefs: Record<string, HTMLDivElement>;
5189
5197
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5190
5198
  coarseTotalBp: number;
5191
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5192
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5199
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5200
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5193
5201
  isScalebarRefNameMenuOpen: boolean;
5194
5202
  scalebarRefNameClickPending: boolean;
5203
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5195
5204
  } & {
5196
5205
  readonly pinnedTracks: any[];
5197
5206
  readonly unpinnedTracks: any[];
@@ -5251,12 +5260,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5251
5260
  setHideHeaderOverview(b: boolean): void;
5252
5261
  setHideNoTracksActive(b: boolean): void;
5253
5262
  setShowGridlines(b: boolean): void;
5254
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5255
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5256
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5263
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5264
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5265
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5266
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5257
5267
  scrollTo(offsetPx: number): number;
5258
5268
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5259
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5269
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5260
5270
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5261
5271
  setNewView(bpPerPx: number, offsetPx: number): void;
5262
5272
  horizontallyFlip(): void;
@@ -5273,7 +5283,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5273
5283
  setShowCenterLine(b: boolean): void;
5274
5284
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5275
5285
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5276
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5286
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5277
5287
  assemblyName: string;
5278
5288
  refName: string;
5279
5289
  start: number;
@@ -5288,8 +5298,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5288
5298
  setScaleFactor(factor: number): void;
5289
5299
  setTargetBpPerPx(target: number | undefined): void;
5290
5300
  clearView(): void;
5291
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5292
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5301
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5302
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5293
5303
  } & {
5294
5304
  slide: (viewWidths: number) => void;
5295
5305
  } & {
@@ -5314,7 +5324,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5314
5324
  } & {
5315
5325
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5316
5326
  } & {
5317
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5327
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5318
5328
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5319
5329
  navToSearchString({ input, assembly, }: {
5320
5330
  input: string;
@@ -5322,8 +5332,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5322
5332
  }): Promise<void>;
5323
5333
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5324
5334
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5325
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
5326
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
5335
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5336
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5327
5337
  } & {
5328
5338
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5329
5339
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5359,7 +5369,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5359
5369
  } | undefined;
5360
5370
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5361
5371
  } & {
5362
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5372
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5363
5373
  } & {
5364
5374
  afterCreate(): void;
5365
5375
  afterAttach(): void;
@@ -5382,10 +5392,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5382
5392
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5383
5393
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5384
5394
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5385
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5395
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5386
5396
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5387
5397
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5388
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5398
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5389
5399
  }, {
5390
5400
  width: number;
5391
5401
  } & {
@@ -5405,10 +5415,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5405
5415
  trackRefs: Record<string, HTMLDivElement>;
5406
5416
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5407
5417
  coarseTotalBp: number;
5408
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5409
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5418
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5419
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5410
5420
  isScalebarRefNameMenuOpen: boolean;
5411
5421
  scalebarRefNameClickPending: boolean;
5422
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5412
5423
  } & {
5413
5424
  readonly pinnedTracks: any[];
5414
5425
  readonly unpinnedTracks: any[];
@@ -5468,12 +5479,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5468
5479
  setHideHeaderOverview(b: boolean): void;
5469
5480
  setHideNoTracksActive(b: boolean): void;
5470
5481
  setShowGridlines(b: boolean): void;
5471
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5472
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5473
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5482
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5483
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5484
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5485
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5474
5486
  scrollTo(offsetPx: number): number;
5475
5487
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5476
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5488
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5477
5489
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5478
5490
  setNewView(bpPerPx: number, offsetPx: number): void;
5479
5491
  horizontallyFlip(): void;
@@ -5490,7 +5502,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5490
5502
  setShowCenterLine(b: boolean): void;
5491
5503
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5492
5504
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5493
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5505
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5494
5506
  assemblyName: string;
5495
5507
  refName: string;
5496
5508
  start: number;
@@ -5505,8 +5517,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5505
5517
  setScaleFactor(factor: number): void;
5506
5518
  setTargetBpPerPx(target: number | undefined): void;
5507
5519
  clearView(): void;
5508
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5509
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5520
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5521
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5510
5522
  } & {
5511
5523
  slide: (viewWidths: number) => void;
5512
5524
  } & {
@@ -5531,7 +5543,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5531
5543
  } & {
5532
5544
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5533
5545
  } & {
5534
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5546
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5535
5547
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5536
5548
  navToSearchString({ input, assembly, }: {
5537
5549
  input: string;
@@ -5539,8 +5551,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5539
5551
  }): Promise<void>;
5540
5552
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5541
5553
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5542
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
5543
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
5554
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5555
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5544
5556
  } & {
5545
5557
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5546
5558
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5576,7 +5588,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5576
5588
  } | undefined;
5577
5589
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5578
5590
  } & {
5579
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5591
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5580
5592
  } & {
5581
5593
  afterCreate(): void;
5582
5594
  afterAttach(): void;
@@ -5599,10 +5611,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5599
5611
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5600
5612
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5601
5613
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5602
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5614
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5603
5615
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5604
5616
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5605
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5617
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5606
5618
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
5607
5619
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5608
5620
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -5622,10 +5634,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5622
5634
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5623
5635
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5624
5636
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5625
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5637
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5626
5638
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5627
5639
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5628
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5640
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5629
5641
  }>>>)[];
5630
5642
  renderProps(): {
5631
5643
  theme: any;
@@ -5649,10 +5661,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5649
5661
  showCytobandsSetting: boolean;
5650
5662
  trackLabels: string;
5651
5663
  showGridlines: boolean;
5652
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
5664
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
5653
5665
  colorByCDS: boolean;
5654
5666
  showTrackOutlines: boolean;
5655
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
5667
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
5656
5668
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
5657
5669
  width: number;
5658
5670
  } & {
@@ -5672,10 +5684,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5672
5684
  trackRefs: Record<string, HTMLDivElement>;
5673
5685
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5674
5686
  coarseTotalBp: number;
5675
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5676
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5687
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5688
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5677
5689
  isScalebarRefNameMenuOpen: boolean;
5678
5690
  scalebarRefNameClickPending: boolean;
5691
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5679
5692
  } & {
5680
5693
  readonly pinnedTracks: any[];
5681
5694
  readonly unpinnedTracks: any[];
@@ -5735,12 +5748,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5735
5748
  setHideHeaderOverview(b: boolean): void;
5736
5749
  setHideNoTracksActive(b: boolean): void;
5737
5750
  setShowGridlines(b: boolean): void;
5738
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5739
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5740
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5751
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5752
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5753
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5754
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5741
5755
  scrollTo(offsetPx: number): number;
5742
5756
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5743
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5757
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5744
5758
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5745
5759
  setNewView(bpPerPx: number, offsetPx: number): void;
5746
5760
  horizontallyFlip(): void;
@@ -5757,7 +5771,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5757
5771
  setShowCenterLine(b: boolean): void;
5758
5772
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5759
5773
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5760
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5774
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5761
5775
  assemblyName: string;
5762
5776
  refName: string;
5763
5777
  start: number;
@@ -5772,8 +5786,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5772
5786
  setScaleFactor(factor: number): void;
5773
5787
  setTargetBpPerPx(target: number | undefined): void;
5774
5788
  clearView(): void;
5775
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5776
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5789
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5790
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5777
5791
  } & {
5778
5792
  slide: (viewWidths: number) => void;
5779
5793
  } & {
@@ -5798,7 +5812,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5798
5812
  } & {
5799
5813
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5800
5814
  } & {
5801
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5815
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5802
5816
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5803
5817
  navToSearchString({ input, assembly, }: {
5804
5818
  input: string;
@@ -5806,8 +5820,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5806
5820
  }): Promise<void>;
5807
5821
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5808
5822
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5809
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
5810
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
5823
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5824
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5811
5825
  } & {
5812
5826
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5813
5827
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5843,7 +5857,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5843
5857
  } | undefined;
5844
5858
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5845
5859
  } & {
5846
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5860
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5847
5861
  } & {
5848
5862
  afterCreate(): void;
5849
5863
  afterAttach(): void;
@@ -5866,10 +5880,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5866
5880
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5867
5881
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5868
5882
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5869
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5883
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5870
5884
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5871
5885
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5872
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5886
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5873
5887
  }, {
5874
5888
  width: number;
5875
5889
  } & {
@@ -5889,10 +5903,11 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5889
5903
  trackRefs: Record<string, HTMLDivElement>;
5890
5904
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5891
5905
  coarseTotalBp: number;
5892
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5893
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5906
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5907
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5894
5908
  isScalebarRefNameMenuOpen: boolean;
5895
5909
  scalebarRefNameClickPending: boolean;
5910
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5896
5911
  } & {
5897
5912
  readonly pinnedTracks: any[];
5898
5913
  readonly unpinnedTracks: any[];
@@ -5952,12 +5967,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5952
5967
  setHideHeaderOverview(b: boolean): void;
5953
5968
  setHideNoTracksActive(b: boolean): void;
5954
5969
  setShowGridlines(b: boolean): void;
5955
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5956
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5957
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5970
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5971
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5972
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5973
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5958
5974
  scrollTo(offsetPx: number): number;
5959
5975
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5960
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5976
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5961
5977
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5962
5978
  setNewView(bpPerPx: number, offsetPx: number): void;
5963
5979
  horizontallyFlip(): void;
@@ -5974,7 +5990,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5974
5990
  setShowCenterLine(b: boolean): void;
5975
5991
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5976
5992
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5977
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5993
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5978
5994
  assemblyName: string;
5979
5995
  refName: string;
5980
5996
  start: number;
@@ -5989,8 +6005,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
5989
6005
  setScaleFactor(factor: number): void;
5990
6006
  setTargetBpPerPx(target: number | undefined): void;
5991
6007
  clearView(): void;
5992
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5993
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
6008
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
6009
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5994
6010
  } & {
5995
6011
  slide: (viewWidths: number) => void;
5996
6012
  } & {
@@ -6015,7 +6031,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
6015
6031
  } & {
6016
6032
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
6017
6033
  } & {
6018
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
6034
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
6019
6035
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
6020
6036
  navToSearchString({ input, assembly, }: {
6021
6037
  input: string;
@@ -6023,8 +6039,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
6023
6039
  }): Promise<void>;
6024
6040
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
6025
6041
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
6026
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation, grow?: number): void;
6027
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[], grow?: number): void;
6042
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
6043
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
6028
6044
  } & {
6029
6045
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
6030
6046
  bpToPx({ refName, coord, regionNumber, }: {
@@ -6060,7 +6076,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
6060
6076
  } | undefined;
6061
6077
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
6062
6078
  } & {
6063
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
6079
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
6064
6080
  } & {
6065
6081
  afterCreate(): void;
6066
6082
  afterAttach(): void;
@@ -6083,10 +6099,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
6083
6099
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6084
6100
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6085
6101
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
6086
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
6102
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
6087
6103
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6088
6104
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6089
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
6105
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
6090
6106
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
6091
6107
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6092
6108
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -6106,10 +6122,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
6106
6122
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6107
6123
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6108
6124
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
6109
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
6125
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
6110
6126
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6111
6127
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6112
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
6128
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
6113
6129
  }>>>;
6114
6130
  removeView(): void;
6115
6131
  } & {