@jbrowse/react-linear-genome-view2 4.0.3 → 4.1.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. package/esm/createModel/createModel.d.ts +230 -142
  2. package/esm/createModel/createSessionModel.d.ts +115 -71
  3. package/esm/createViewState.d.ts +631 -389
  4. package/esm/version.d.ts +1 -1
  5. package/esm/version.js +1 -1
  6. package/package.json +46 -23
package/esm/createViewState.d.ts CHANGED
@@ -249,10 +249,10 @@ export default function createViewState(opts: ViewStateOptions): {
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  showCytobandsSetting: boolean;
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  trackLabels: string;
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  showGridlines: boolean;
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- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
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+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
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  colorByCDS: boolean;
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  showTrackOutlines: boolean;
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- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
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+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
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  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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  width: number;
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  } & {
@@ -268,11 +268,15 @@ export default function createViewState(opts: ViewStateOptions): {
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  lastTrackDragY: undefined | number;
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  volatileError: unknown;
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  scaleFactor: number;
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+ targetBpPerPx: number | undefined;
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
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- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ isScalebarRefNameMenuOpen: boolean;
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+ scalebarRefNameClickPending: boolean;
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+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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  } & {
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  readonly pinnedTracks: any[];
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  readonly unpinnedTracks: any[];
@@ -326,16 +330,19 @@ export default function createViewState(opts: ViewStateOptions): {
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  setShowCytobands(flag: boolean): void;
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  setWidth(newWidth: number): void;
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  setError(error: unknown): void;
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+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
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+ setScalebarRefNameClickPending(pending: boolean): void;
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  setHideHeader(b: boolean): void;
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
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- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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  setNewView(bpPerPx: number, offsetPx: number): void;
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  horizontallyFlip(): void;
@@ -352,7 +359,7 @@ export default function createViewState(opts: ViewStateOptions): {
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  setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
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+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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  assemblyName: string;
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  refName: string;
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  start: number;
@@ -365,9 +372,10 @@ export default function createViewState(opts: ViewStateOptions): {
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  setDraggingTrackId(idx?: string): void;
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  setLastTrackDragY(y: number): void;
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  setScaleFactor(factor: number): void;
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+ setTargetBpPerPx(target: number | undefined): void;
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  clearView(): void;
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- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
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- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
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+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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  } & {
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  slide: (viewWidths: number) => void;
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  } & {
@@ -386,10 +394,13 @@ export default function createViewState(opts: ViewStateOptions): {
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  readonly visibleLocStrings: string;
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  readonly coarseVisibleLocStrings: string;
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  readonly coarseTotalBpDisplayStr: string;
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+ readonly effectiveBpPerPx: number;
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+ readonly effectiveTotalBp: number;
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+ readonly effectiveTotalBpDisplayStr: string;
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  } & {
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  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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  } & {
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- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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  navToSearchString({ input, assembly, }: {
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  input: string;
@@ -397,8 +408,8 @@ export default function createViewState(opts: ViewStateOptions): {
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  }): Promise<void>;
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  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
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- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
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+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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  } & {
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  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -434,7 +445,7 @@ export default function createViewState(opts: ViewStateOptions): {
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  } | undefined;
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  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  } & {
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- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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  } & {
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  afterCreate(): void;
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  afterAttach(): void;
@@ -457,10 +468,10 @@ export default function createViewState(opts: ViewStateOptions): {
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  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
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+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
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+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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  }, {
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  width: number;
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  } & {
@@ -476,11 +487,15 @@ export default function createViewState(opts: ViewStateOptions): {
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  lastTrackDragY: undefined | number;
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  volatileError: unknown;
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  scaleFactor: number;
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+ targetBpPerPx: number | undefined;
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
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- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
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+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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+ isScalebarRefNameMenuOpen: boolean;
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+ scalebarRefNameClickPending: boolean;
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+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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  } & {
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  readonly pinnedTracks: any[];
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  readonly unpinnedTracks: any[];
@@ -534,16 +549,19 @@ export default function createViewState(opts: ViewStateOptions): {
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  setShowCytobands(flag: boolean): void;
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  setWidth(newWidth: number): void;
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  setError(error: unknown): void;
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+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
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+ setScalebarRefNameClickPending(pending: boolean): void;
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  setHideHeader(b: boolean): void;
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
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- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
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+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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  setNewView(bpPerPx: number, offsetPx: number): void;
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  horizontallyFlip(): void;
@@ -560,7 +578,7 @@ export default function createViewState(opts: ViewStateOptions): {
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  setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
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+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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  assemblyName: string;
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  refName: string;
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  start: number;
@@ -573,9 +591,10 @@ export default function createViewState(opts: ViewStateOptions): {
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  setDraggingTrackId(idx?: string): void;
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  setLastTrackDragY(y: number): void;
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  setScaleFactor(factor: number): void;
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+ setTargetBpPerPx(target: number | undefined): void;
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  clearView(): void;
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- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
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- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
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+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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  } & {
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  slide: (viewWidths: number) => void;
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  } & {
@@ -594,10 +613,13 @@ export default function createViewState(opts: ViewStateOptions): {
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  readonly visibleLocStrings: string;
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  readonly coarseVisibleLocStrings: string;
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  readonly coarseTotalBpDisplayStr: string;
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+ readonly effectiveBpPerPx: number;
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+ readonly effectiveTotalBp: number;
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+ readonly effectiveTotalBpDisplayStr: string;
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  } & {
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  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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  } & {
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- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
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+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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  navToSearchString({ input, assembly, }: {
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  input: string;
@@ -605,8 +627,8 @@ export default function createViewState(opts: ViewStateOptions): {
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  }): Promise<void>;
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  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
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- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
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+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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  } & {
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  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  bpToPx({ refName, coord, regionNumber, }: {
@@ -642,7 +664,7 @@ export default function createViewState(opts: ViewStateOptions): {
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  } | undefined;
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  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  } & {
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- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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  } & {
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  afterCreate(): void;
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  afterAttach(): void;
@@ -665,10 +687,10 @@ export default function createViewState(opts: ViewStateOptions): {
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  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
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+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
693
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
672
694
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
673
695
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
674
696
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -688,10 +710,10 @@ export default function createViewState(opts: ViewStateOptions): {
688
710
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
689
711
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
690
712
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
691
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
713
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
692
714
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
693
715
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
694
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
716
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
695
717
  }>>>;
696
718
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
697
719
  selection: unknown;
@@ -2433,9 +2455,9 @@ export default function createViewState(opts: ViewStateOptions): {
2433
2455
  } & {
2434
2456
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
2435
2457
  } & {
2436
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
2437
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
2438
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
2458
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
2459
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
2460
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
2439
2461
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
2440
2462
  removeSnackbarMessage(message: string): void;
2441
2463
  } & {
@@ -2462,10 +2484,10 @@ export default function createViewState(opts: ViewStateOptions): {
2462
2484
  showCytobandsSetting: boolean;
2463
2485
  trackLabels: string;
2464
2486
  showGridlines: boolean;
2465
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
2487
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
2466
2488
  colorByCDS: boolean;
2467
2489
  showTrackOutlines: boolean;
2468
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
2490
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
2469
2491
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2470
2492
  width: number;
2471
2493
  } & {
@@ -2481,11 +2503,15 @@ export default function createViewState(opts: ViewStateOptions): {
2481
2503
  lastTrackDragY: undefined | number;
2482
2504
  volatileError: unknown;
2483
2505
  scaleFactor: number;
2506
+ targetBpPerPx: number | undefined;
2484
2507
  trackRefs: Record<string, HTMLDivElement>;
2485
2508
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2486
2509
  coarseTotalBp: number;
2487
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2488
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2510
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2511
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2512
+ isScalebarRefNameMenuOpen: boolean;
2513
+ scalebarRefNameClickPending: boolean;
2514
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
2489
2515
  } & {
2490
2516
  readonly pinnedTracks: any[];
2491
2517
  readonly unpinnedTracks: any[];
@@ -2539,16 +2565,19 @@ export default function createViewState(opts: ViewStateOptions): {
2539
2565
  setShowCytobands(flag: boolean): void;
2540
2566
  setWidth(newWidth: number): void;
2541
2567
  setError(error: unknown): void;
2568
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
2569
+ setScalebarRefNameClickPending(pending: boolean): void;
2542
2570
  setHideHeader(b: boolean): void;
2543
2571
  setHideHeaderOverview(b: boolean): void;
2544
2572
  setHideNoTracksActive(b: boolean): void;
2545
2573
  setShowGridlines(b: boolean): void;
2546
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2547
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
2548
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2574
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2575
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
2576
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2577
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
2549
2578
  scrollTo(offsetPx: number): number;
2550
2579
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
2551
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2580
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2552
2581
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
2553
2582
  setNewView(bpPerPx: number, offsetPx: number): void;
2554
2583
  horizontallyFlip(): void;
@@ -2565,7 +2594,7 @@ export default function createViewState(opts: ViewStateOptions): {
2565
2594
  setShowCenterLine(b: boolean): void;
2566
2595
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
2567
2596
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
2568
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
2597
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
2569
2598
  assemblyName: string;
2570
2599
  refName: string;
2571
2600
  start: number;
@@ -2578,9 +2607,10 @@ export default function createViewState(opts: ViewStateOptions): {
2578
2607
  setDraggingTrackId(idx?: string): void;
2579
2608
  setLastTrackDragY(y: number): void;
2580
2609
  setScaleFactor(factor: number): void;
2610
+ setTargetBpPerPx(target: number | undefined): void;
2581
2611
  clearView(): void;
2582
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
2583
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
2612
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
2613
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
2584
2614
  } & {
2585
2615
  slide: (viewWidths: number) => void;
2586
2616
  } & {
@@ -2599,10 +2629,13 @@ export default function createViewState(opts: ViewStateOptions): {
2599
2629
  readonly visibleLocStrings: string;
2600
2630
  readonly coarseVisibleLocStrings: string;
2601
2631
  readonly coarseTotalBpDisplayStr: string;
2632
+ readonly effectiveBpPerPx: number;
2633
+ readonly effectiveTotalBp: number;
2634
+ readonly effectiveTotalBpDisplayStr: string;
2602
2635
  } & {
2603
2636
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
2604
2637
  } & {
2605
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2638
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2606
2639
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
2607
2640
  navToSearchString({ input, assembly, }: {
2608
2641
  input: string;
@@ -2610,8 +2643,8 @@ export default function createViewState(opts: ViewStateOptions): {
2610
2643
  }): Promise<void>;
2611
2644
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
2612
2645
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
2613
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
2614
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
2646
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
2647
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
2615
2648
  } & {
2616
2649
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2617
2650
  bpToPx({ refName, coord, regionNumber, }: {
@@ -2647,7 +2680,7 @@ export default function createViewState(opts: ViewStateOptions): {
2647
2680
  } | undefined;
2648
2681
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2649
2682
  } & {
2650
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2683
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2651
2684
  } & {
2652
2685
  afterCreate(): void;
2653
2686
  afterAttach(): void;
@@ -2670,10 +2703,10 @@ export default function createViewState(opts: ViewStateOptions): {
2670
2703
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2671
2704
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2672
2705
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2673
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2706
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2674
2707
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2675
2708
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2676
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2709
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2677
2710
  }, {
2678
2711
  width: number;
2679
2712
  } & {
@@ -2689,11 +2722,15 @@ export default function createViewState(opts: ViewStateOptions): {
2689
2722
  lastTrackDragY: undefined | number;
2690
2723
  volatileError: unknown;
2691
2724
  scaleFactor: number;
2725
+ targetBpPerPx: number | undefined;
2692
2726
  trackRefs: Record<string, HTMLDivElement>;
2693
2727
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2694
2728
  coarseTotalBp: number;
2695
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2696
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2729
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2730
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2731
+ isScalebarRefNameMenuOpen: boolean;
2732
+ scalebarRefNameClickPending: boolean;
2733
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
2697
2734
  } & {
2698
2735
  readonly pinnedTracks: any[];
2699
2736
  readonly unpinnedTracks: any[];
@@ -2747,16 +2784,19 @@ export default function createViewState(opts: ViewStateOptions): {
2747
2784
  setShowCytobands(flag: boolean): void;
2748
2785
  setWidth(newWidth: number): void;
2749
2786
  setError(error: unknown): void;
2787
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
2788
+ setScalebarRefNameClickPending(pending: boolean): void;
2750
2789
  setHideHeader(b: boolean): void;
2751
2790
  setHideHeaderOverview(b: boolean): void;
2752
2791
  setHideNoTracksActive(b: boolean): void;
2753
2792
  setShowGridlines(b: boolean): void;
2754
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2755
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
2756
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
2793
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2794
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
2795
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
2796
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
2757
2797
  scrollTo(offsetPx: number): number;
2758
2798
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
2759
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2799
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2760
2800
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
2761
2801
  setNewView(bpPerPx: number, offsetPx: number): void;
2762
2802
  horizontallyFlip(): void;
@@ -2773,7 +2813,7 @@ export default function createViewState(opts: ViewStateOptions): {
2773
2813
  setShowCenterLine(b: boolean): void;
2774
2814
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
2775
2815
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
2776
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
2816
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
2777
2817
  assemblyName: string;
2778
2818
  refName: string;
2779
2819
  start: number;
@@ -2786,9 +2826,10 @@ export default function createViewState(opts: ViewStateOptions): {
2786
2826
  setDraggingTrackId(idx?: string): void;
2787
2827
  setLastTrackDragY(y: number): void;
2788
2828
  setScaleFactor(factor: number): void;
2829
+ setTargetBpPerPx(target: number | undefined): void;
2789
2830
  clearView(): void;
2790
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
2791
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
2831
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
2832
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
2792
2833
  } & {
2793
2834
  slide: (viewWidths: number) => void;
2794
2835
  } & {
@@ -2807,10 +2848,13 @@ export default function createViewState(opts: ViewStateOptions): {
2807
2848
  readonly visibleLocStrings: string;
2808
2849
  readonly coarseVisibleLocStrings: string;
2809
2850
  readonly coarseTotalBpDisplayStr: string;
2851
+ readonly effectiveBpPerPx: number;
2852
+ readonly effectiveTotalBp: number;
2853
+ readonly effectiveTotalBpDisplayStr: string;
2810
2854
  } & {
2811
2855
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
2812
2856
  } & {
2813
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
2857
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
2814
2858
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
2815
2859
  navToSearchString({ input, assembly, }: {
2816
2860
  input: string;
@@ -2818,8 +2862,8 @@ export default function createViewState(opts: ViewStateOptions): {
2818
2862
  }): Promise<void>;
2819
2863
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
2820
2864
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
2821
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
2822
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
2865
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
2866
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
2823
2867
  } & {
2824
2868
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2825
2869
  bpToPx({ refName, coord, regionNumber, }: {
@@ -2855,7 +2899,7 @@ export default function createViewState(opts: ViewStateOptions): {
2855
2899
  } | undefined;
2856
2900
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2857
2901
  } & {
2858
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2902
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
2859
2903
  } & {
2860
2904
  afterCreate(): void;
2861
2905
  afterAttach(): void;
@@ -2878,10 +2922,10 @@ export default function createViewState(opts: ViewStateOptions): {
2878
2922
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2879
2923
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2880
2924
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2881
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2925
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2882
2926
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2883
2927
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2884
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2928
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2885
2929
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
2886
2930
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2887
2931
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -2901,10 +2945,10 @@ export default function createViewState(opts: ViewStateOptions): {
2901
2945
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2902
2946
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2903
2947
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2904
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
2948
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
2905
2949
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2906
2950
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
2907
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
2951
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
2908
2952
  }>>>)[];
2909
2953
  renderProps(): {
2910
2954
  theme: any;
@@ -2928,10 +2972,10 @@ export default function createViewState(opts: ViewStateOptions): {
2928
2972
  showCytobandsSetting: boolean;
2929
2973
  trackLabels: string;
2930
2974
  showGridlines: boolean;
2931
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
2975
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
2932
2976
  colorByCDS: boolean;
2933
2977
  showTrackOutlines: boolean;
2934
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
2978
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
2935
2979
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2936
2980
  width: number;
2937
2981
  } & {
@@ -2947,11 +2991,15 @@ export default function createViewState(opts: ViewStateOptions): {
2947
2991
  lastTrackDragY: undefined | number;
2948
2992
  volatileError: unknown;
2949
2993
  scaleFactor: number;
2994
+ targetBpPerPx: number | undefined;
2950
2995
  trackRefs: Record<string, HTMLDivElement>;
2951
2996
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
2952
2997
  coarseTotalBp: number;
2953
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2954
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
2998
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
2999
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
3000
+ isScalebarRefNameMenuOpen: boolean;
3001
+ scalebarRefNameClickPending: boolean;
3002
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
2955
3003
  } & {
2956
3004
  readonly pinnedTracks: any[];
2957
3005
  readonly unpinnedTracks: any[];
@@ -3005,16 +3053,19 @@ export default function createViewState(opts: ViewStateOptions): {
3005
3053
  setShowCytobands(flag: boolean): void;
3006
3054
  setWidth(newWidth: number): void;
3007
3055
  setError(error: unknown): void;
3056
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
3057
+ setScalebarRefNameClickPending(pending: boolean): void;
3008
3058
  setHideHeader(b: boolean): void;
3009
3059
  setHideHeaderOverview(b: boolean): void;
3010
3060
  setHideNoTracksActive(b: boolean): void;
3011
3061
  setShowGridlines(b: boolean): void;
3012
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
3013
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
3014
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
3062
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
3063
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
3064
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
3065
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
3015
3066
  scrollTo(offsetPx: number): number;
3016
3067
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
3017
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
3068
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
3018
3069
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
3019
3070
  setNewView(bpPerPx: number, offsetPx: number): void;
3020
3071
  horizontallyFlip(): void;
@@ -3031,7 +3082,7 @@ export default function createViewState(opts: ViewStateOptions): {
3031
3082
  setShowCenterLine(b: boolean): void;
3032
3083
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
3033
3084
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
3034
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
3085
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
3035
3086
  assemblyName: string;
3036
3087
  refName: string;
3037
3088
  start: number;
@@ -3044,9 +3095,10 @@ export default function createViewState(opts: ViewStateOptions): {
3044
3095
  setDraggingTrackId(idx?: string): void;
3045
3096
  setLastTrackDragY(y: number): void;
3046
3097
  setScaleFactor(factor: number): void;
3098
+ setTargetBpPerPx(target: number | undefined): void;
3047
3099
  clearView(): void;
3048
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
3049
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
3100
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
3101
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
3050
3102
  } & {
3051
3103
  slide: (viewWidths: number) => void;
3052
3104
  } & {
@@ -3065,10 +3117,13 @@ export default function createViewState(opts: ViewStateOptions): {
3065
3117
  readonly visibleLocStrings: string;
3066
3118
  readonly coarseVisibleLocStrings: string;
3067
3119
  readonly coarseTotalBpDisplayStr: string;
3120
+ readonly effectiveBpPerPx: number;
3121
+ readonly effectiveTotalBp: number;
3122
+ readonly effectiveTotalBpDisplayStr: string;
3068
3123
  } & {
3069
3124
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
3070
3125
  } & {
3071
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
3126
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
3072
3127
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
3073
3128
  navToSearchString({ input, assembly, }: {
3074
3129
  input: string;
@@ -3076,8 +3131,8 @@ export default function createViewState(opts: ViewStateOptions): {
3076
3131
  }): Promise<void>;
3077
3132
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
3078
3133
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
3079
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
3080
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
3134
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
3135
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
3081
3136
  } & {
3082
3137
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3083
3138
  bpToPx({ refName, coord, regionNumber, }: {
@@ -3113,7 +3168,7 @@ export default function createViewState(opts: ViewStateOptions): {
3113
3168
  } | undefined;
3114
3169
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
3115
3170
  } & {
3116
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
3171
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
3117
3172
  } & {
3118
3173
  afterCreate(): void;
3119
3174
  afterAttach(): void;
@@ -3136,10 +3191,10 @@ export default function createViewState(opts: ViewStateOptions): {
3136
3191
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3137
3192
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3138
3193
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3139
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
3194
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
3140
3195
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3141
3196
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3142
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
3197
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
3143
3198
  }, {
3144
3199
  width: number;
3145
3200
  } & {
@@ -3155,11 +3210,15 @@ export default function createViewState(opts: ViewStateOptions): {
3155
3210
  lastTrackDragY: undefined | number;
3156
3211
  volatileError: unknown;
3157
3212
  scaleFactor: number;
3213
+ targetBpPerPx: number | undefined;
3158
3214
  trackRefs: Record<string, HTMLDivElement>;
3159
3215
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
3160
3216
  coarseTotalBp: number;
3161
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
3162
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
3217
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
3218
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
3219
+ isScalebarRefNameMenuOpen: boolean;
3220
+ scalebarRefNameClickPending: boolean;
3221
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
3163
3222
  } & {
3164
3223
  readonly pinnedTracks: any[];
3165
3224
  readonly unpinnedTracks: any[];
@@ -3213,16 +3272,19 @@ export default function createViewState(opts: ViewStateOptions): {
3213
3272
  setShowCytobands(flag: boolean): void;
3214
3273
  setWidth(newWidth: number): void;
3215
3274
  setError(error: unknown): void;
3275
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
3276
+ setScalebarRefNameClickPending(pending: boolean): void;
3216
3277
  setHideHeader(b: boolean): void;
3217
3278
  setHideHeaderOverview(b: boolean): void;
3218
3279
  setHideNoTracksActive(b: boolean): void;
3219
3280
  setShowGridlines(b: boolean): void;
3220
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
3221
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
3222
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
3281
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
3282
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
3283
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
3284
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
3223
3285
  scrollTo(offsetPx: number): number;
3224
3286
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
3225
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
3287
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
3226
3288
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
3227
3289
  setNewView(bpPerPx: number, offsetPx: number): void;
3228
3290
  horizontallyFlip(): void;
@@ -3239,7 +3301,7 @@ export default function createViewState(opts: ViewStateOptions): {
3239
3301
  setShowCenterLine(b: boolean): void;
3240
3302
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
3241
3303
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
3242
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
3304
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
3243
3305
  assemblyName: string;
3244
3306
  refName: string;
3245
3307
  start: number;
@@ -3252,9 +3314,10 @@ export default function createViewState(opts: ViewStateOptions): {
3252
3314
  setDraggingTrackId(idx?: string): void;
3253
3315
  setLastTrackDragY(y: number): void;
3254
3316
  setScaleFactor(factor: number): void;
3317
+ setTargetBpPerPx(target: number | undefined): void;
3255
3318
  clearView(): void;
3256
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
3257
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
3319
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
3320
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
3258
3321
  } & {
3259
3322
  slide: (viewWidths: number) => void;
3260
3323
  } & {
@@ -3273,10 +3336,13 @@ export default function createViewState(opts: ViewStateOptions): {
3273
3336
  readonly visibleLocStrings: string;
3274
3337
  readonly coarseVisibleLocStrings: string;
3275
3338
  readonly coarseTotalBpDisplayStr: string;
3339
+ readonly effectiveBpPerPx: number;
3340
+ readonly effectiveTotalBp: number;
3341
+ readonly effectiveTotalBpDisplayStr: string;
3276
3342
  } & {
3277
3343
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
3278
3344
  } & {
3279
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
3345
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
3280
3346
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
3281
3347
  navToSearchString({ input, assembly, }: {
3282
3348
  input: string;
@@ -3284,8 +3350,8 @@ export default function createViewState(opts: ViewStateOptions): {
3284
3350
  }): Promise<void>;
3285
3351
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
3286
3352
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
3287
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
3288
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
3353
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
3354
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
3289
3355
  } & {
3290
3356
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3291
3357
  bpToPx({ refName, coord, regionNumber, }: {
@@ -3321,7 +3387,7 @@ export default function createViewState(opts: ViewStateOptions): {
3321
3387
  } | undefined;
3322
3388
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
3323
3389
  } & {
3324
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
3390
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
3325
3391
  } & {
3326
3392
  afterCreate(): void;
3327
3393
  afterAttach(): void;
@@ -3344,10 +3410,10 @@ export default function createViewState(opts: ViewStateOptions): {
3344
3410
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3345
3411
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3346
3412
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3347
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
3413
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
3348
3414
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3349
3415
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3350
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
3416
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
3351
3417
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
3352
3418
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3353
3419
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -3367,10 +3433,10 @@ export default function createViewState(opts: ViewStateOptions): {
3367
3433
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3368
3434
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3369
3435
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3370
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
3436
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
3371
3437
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3372
3438
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
3373
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
3439
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
3374
3440
  }>>>;
3375
3441
  removeView(): void;
3376
3442
  } & {
@@ -5132,9 +5198,9 @@ export default function createViewState(opts: ViewStateOptions): {
5132
5198
  } & {
5133
5199
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
5134
5200
  } & {
5135
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
5136
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
5137
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
5201
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
5202
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
5203
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
5138
5204
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
5139
5205
  removeSnackbarMessage(message: string): void;
5140
5206
  } & {
@@ -5161,10 +5227,10 @@ export default function createViewState(opts: ViewStateOptions): {
5161
5227
  showCytobandsSetting: boolean;
5162
5228
  trackLabels: string;
5163
5229
  showGridlines: boolean;
5164
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
5230
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
5165
5231
  colorByCDS: boolean;
5166
5232
  showTrackOutlines: boolean;
5167
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
5233
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
5168
5234
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
5169
5235
  width: number;
5170
5236
  } & {
@@ -5180,11 +5246,15 @@ export default function createViewState(opts: ViewStateOptions): {
5180
5246
  lastTrackDragY: undefined | number;
5181
5247
  volatileError: unknown;
5182
5248
  scaleFactor: number;
5249
+ targetBpPerPx: number | undefined;
5183
5250
  trackRefs: Record<string, HTMLDivElement>;
5184
5251
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5185
5252
  coarseTotalBp: number;
5186
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5187
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5253
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5254
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5255
+ isScalebarRefNameMenuOpen: boolean;
5256
+ scalebarRefNameClickPending: boolean;
5257
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5188
5258
  } & {
5189
5259
  readonly pinnedTracks: any[];
5190
5260
  readonly unpinnedTracks: any[];
@@ -5238,16 +5308,19 @@ export default function createViewState(opts: ViewStateOptions): {
5238
5308
  setShowCytobands(flag: boolean): void;
5239
5309
  setWidth(newWidth: number): void;
5240
5310
  setError(error: unknown): void;
5311
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
5312
+ setScalebarRefNameClickPending(pending: boolean): void;
5241
5313
  setHideHeader(b: boolean): void;
5242
5314
  setHideHeaderOverview(b: boolean): void;
5243
5315
  setHideNoTracksActive(b: boolean): void;
5244
5316
  setShowGridlines(b: boolean): void;
5245
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5246
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5247
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5317
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5318
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5319
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5320
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5248
5321
  scrollTo(offsetPx: number): number;
5249
5322
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5250
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5323
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5251
5324
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5252
5325
  setNewView(bpPerPx: number, offsetPx: number): void;
5253
5326
  horizontallyFlip(): void;
@@ -5264,7 +5337,7 @@ export default function createViewState(opts: ViewStateOptions): {
5264
5337
  setShowCenterLine(b: boolean): void;
5265
5338
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5266
5339
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5267
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5340
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5268
5341
  assemblyName: string;
5269
5342
  refName: string;
5270
5343
  start: number;
@@ -5277,9 +5350,10 @@ export default function createViewState(opts: ViewStateOptions): {
5277
5350
  setDraggingTrackId(idx?: string): void;
5278
5351
  setLastTrackDragY(y: number): void;
5279
5352
  setScaleFactor(factor: number): void;
5353
+ setTargetBpPerPx(target: number | undefined): void;
5280
5354
  clearView(): void;
5281
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5282
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5355
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5356
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5283
5357
  } & {
5284
5358
  slide: (viewWidths: number) => void;
5285
5359
  } & {
@@ -5298,10 +5372,13 @@ export default function createViewState(opts: ViewStateOptions): {
5298
5372
  readonly visibleLocStrings: string;
5299
5373
  readonly coarseVisibleLocStrings: string;
5300
5374
  readonly coarseTotalBpDisplayStr: string;
5375
+ readonly effectiveBpPerPx: number;
5376
+ readonly effectiveTotalBp: number;
5377
+ readonly effectiveTotalBpDisplayStr: string;
5301
5378
  } & {
5302
5379
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5303
5380
  } & {
5304
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5381
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5305
5382
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5306
5383
  navToSearchString({ input, assembly, }: {
5307
5384
  input: string;
@@ -5309,8 +5386,8 @@ export default function createViewState(opts: ViewStateOptions): {
5309
5386
  }): Promise<void>;
5310
5387
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5311
5388
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5312
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
5313
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
5389
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5390
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5314
5391
  } & {
5315
5392
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5316
5393
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5346,7 +5423,7 @@ export default function createViewState(opts: ViewStateOptions): {
5346
5423
  } | undefined;
5347
5424
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5348
5425
  } & {
5349
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5426
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5350
5427
  } & {
5351
5428
  afterCreate(): void;
5352
5429
  afterAttach(): void;
@@ -5369,10 +5446,10 @@ export default function createViewState(opts: ViewStateOptions): {
5369
5446
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5370
5447
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5371
5448
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5372
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5449
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5373
5450
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5374
5451
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5375
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5452
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5376
5453
  }, {
5377
5454
  width: number;
5378
5455
  } & {
@@ -5388,11 +5465,15 @@ export default function createViewState(opts: ViewStateOptions): {
5388
5465
  lastTrackDragY: undefined | number;
5389
5466
  volatileError: unknown;
5390
5467
  scaleFactor: number;
5468
+ targetBpPerPx: number | undefined;
5391
5469
  trackRefs: Record<string, HTMLDivElement>;
5392
5470
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5393
5471
  coarseTotalBp: number;
5394
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5395
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5472
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5473
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5474
+ isScalebarRefNameMenuOpen: boolean;
5475
+ scalebarRefNameClickPending: boolean;
5476
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5396
5477
  } & {
5397
5478
  readonly pinnedTracks: any[];
5398
5479
  readonly unpinnedTracks: any[];
@@ -5446,16 +5527,19 @@ export default function createViewState(opts: ViewStateOptions): {
5446
5527
  setShowCytobands(flag: boolean): void;
5447
5528
  setWidth(newWidth: number): void;
5448
5529
  setError(error: unknown): void;
5530
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
5531
+ setScalebarRefNameClickPending(pending: boolean): void;
5449
5532
  setHideHeader(b: boolean): void;
5450
5533
  setHideHeaderOverview(b: boolean): void;
5451
5534
  setHideNoTracksActive(b: boolean): void;
5452
5535
  setShowGridlines(b: boolean): void;
5453
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5454
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5455
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5536
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5537
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5538
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5539
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5456
5540
  scrollTo(offsetPx: number): number;
5457
5541
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5458
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5542
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5459
5543
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5460
5544
  setNewView(bpPerPx: number, offsetPx: number): void;
5461
5545
  horizontallyFlip(): void;
@@ -5472,7 +5556,7 @@ export default function createViewState(opts: ViewStateOptions): {
5472
5556
  setShowCenterLine(b: boolean): void;
5473
5557
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5474
5558
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5475
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5559
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5476
5560
  assemblyName: string;
5477
5561
  refName: string;
5478
5562
  start: number;
@@ -5485,9 +5569,10 @@ export default function createViewState(opts: ViewStateOptions): {
5485
5569
  setDraggingTrackId(idx?: string): void;
5486
5570
  setLastTrackDragY(y: number): void;
5487
5571
  setScaleFactor(factor: number): void;
5572
+ setTargetBpPerPx(target: number | undefined): void;
5488
5573
  clearView(): void;
5489
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5490
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5574
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5575
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5491
5576
  } & {
5492
5577
  slide: (viewWidths: number) => void;
5493
5578
  } & {
@@ -5506,10 +5591,13 @@ export default function createViewState(opts: ViewStateOptions): {
5506
5591
  readonly visibleLocStrings: string;
5507
5592
  readonly coarseVisibleLocStrings: string;
5508
5593
  readonly coarseTotalBpDisplayStr: string;
5594
+ readonly effectiveBpPerPx: number;
5595
+ readonly effectiveTotalBp: number;
5596
+ readonly effectiveTotalBpDisplayStr: string;
5509
5597
  } & {
5510
5598
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5511
5599
  } & {
5512
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5600
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5513
5601
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5514
5602
  navToSearchString({ input, assembly, }: {
5515
5603
  input: string;
@@ -5517,8 +5605,8 @@ export default function createViewState(opts: ViewStateOptions): {
5517
5605
  }): Promise<void>;
5518
5606
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5519
5607
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5520
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
5521
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
5608
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5609
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5522
5610
  } & {
5523
5611
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5524
5612
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5554,7 +5642,7 @@ export default function createViewState(opts: ViewStateOptions): {
5554
5642
  } | undefined;
5555
5643
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5556
5644
  } & {
5557
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5645
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5558
5646
  } & {
5559
5647
  afterCreate(): void;
5560
5648
  afterAttach(): void;
@@ -5577,10 +5665,10 @@ export default function createViewState(opts: ViewStateOptions): {
5577
5665
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5578
5666
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5579
5667
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5580
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5668
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5581
5669
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5582
5670
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5583
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5671
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5584
5672
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
5585
5673
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5586
5674
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -5600,10 +5688,10 @@ export default function createViewState(opts: ViewStateOptions): {
5600
5688
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5601
5689
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5602
5690
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5603
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5691
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5604
5692
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5605
5693
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5606
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5694
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5607
5695
  }>>>)[];
5608
5696
  renderProps(): {
5609
5697
  theme: any;
@@ -5627,10 +5715,10 @@ export default function createViewState(opts: ViewStateOptions): {
5627
5715
  showCytobandsSetting: boolean;
5628
5716
  trackLabels: string;
5629
5717
  showGridlines: boolean;
5630
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
5718
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
5631
5719
  colorByCDS: boolean;
5632
5720
  showTrackOutlines: boolean;
5633
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
5721
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
5634
5722
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
5635
5723
  width: number;
5636
5724
  } & {
@@ -5646,11 +5734,15 @@ export default function createViewState(opts: ViewStateOptions): {
5646
5734
  lastTrackDragY: undefined | number;
5647
5735
  volatileError: unknown;
5648
5736
  scaleFactor: number;
5737
+ targetBpPerPx: number | undefined;
5649
5738
  trackRefs: Record<string, HTMLDivElement>;
5650
5739
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5651
5740
  coarseTotalBp: number;
5652
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5653
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5741
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5742
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5743
+ isScalebarRefNameMenuOpen: boolean;
5744
+ scalebarRefNameClickPending: boolean;
5745
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5654
5746
  } & {
5655
5747
  readonly pinnedTracks: any[];
5656
5748
  readonly unpinnedTracks: any[];
@@ -5704,16 +5796,19 @@ export default function createViewState(opts: ViewStateOptions): {
5704
5796
  setShowCytobands(flag: boolean): void;
5705
5797
  setWidth(newWidth: number): void;
5706
5798
  setError(error: unknown): void;
5799
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
5800
+ setScalebarRefNameClickPending(pending: boolean): void;
5707
5801
  setHideHeader(b: boolean): void;
5708
5802
  setHideHeaderOverview(b: boolean): void;
5709
5803
  setHideNoTracksActive(b: boolean): void;
5710
5804
  setShowGridlines(b: boolean): void;
5711
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5712
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5713
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5805
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5806
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
5807
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
5808
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5714
5809
  scrollTo(offsetPx: number): number;
5715
5810
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5716
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5811
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5717
5812
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5718
5813
  setNewView(bpPerPx: number, offsetPx: number): void;
5719
5814
  horizontallyFlip(): void;
@@ -5730,7 +5825,7 @@ export default function createViewState(opts: ViewStateOptions): {
5730
5825
  setShowCenterLine(b: boolean): void;
5731
5826
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5732
5827
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5733
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
5828
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5734
5829
  assemblyName: string;
5735
5830
  refName: string;
5736
5831
  start: number;
@@ -5743,9 +5838,10 @@ export default function createViewState(opts: ViewStateOptions): {
5743
5838
  setDraggingTrackId(idx?: string): void;
5744
5839
  setLastTrackDragY(y: number): void;
5745
5840
  setScaleFactor(factor: number): void;
5841
+ setTargetBpPerPx(target: number | undefined): void;
5746
5842
  clearView(): void;
5747
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5748
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
5843
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
5844
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5749
5845
  } & {
5750
5846
  slide: (viewWidths: number) => void;
5751
5847
  } & {
@@ -5764,10 +5860,13 @@ export default function createViewState(opts: ViewStateOptions): {
5764
5860
  readonly visibleLocStrings: string;
5765
5861
  readonly coarseVisibleLocStrings: string;
5766
5862
  readonly coarseTotalBpDisplayStr: string;
5863
+ readonly effectiveBpPerPx: number;
5864
+ readonly effectiveTotalBp: number;
5865
+ readonly effectiveTotalBpDisplayStr: string;
5767
5866
  } & {
5768
5867
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5769
5868
  } & {
5770
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
5869
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5771
5870
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5772
5871
  navToSearchString({ input, assembly, }: {
5773
5872
  input: string;
@@ -5775,8 +5874,8 @@ export default function createViewState(opts: ViewStateOptions): {
5775
5874
  }): Promise<void>;
5776
5875
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5777
5876
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5778
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
5779
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
5877
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
5878
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5780
5879
  } & {
5781
5880
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5782
5881
  bpToPx({ refName, coord, regionNumber, }: {
@@ -5812,7 +5911,7 @@ export default function createViewState(opts: ViewStateOptions): {
5812
5911
  } | undefined;
5813
5912
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5814
5913
  } & {
5815
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5914
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
5816
5915
  } & {
5817
5916
  afterCreate(): void;
5818
5917
  afterAttach(): void;
@@ -5835,10 +5934,10 @@ export default function createViewState(opts: ViewStateOptions): {
5835
5934
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5836
5935
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5837
5936
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
5838
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
5937
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
5839
5938
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5840
5939
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
5841
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
5940
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
5842
5941
  }, {
5843
5942
  width: number;
5844
5943
  } & {
@@ -5854,11 +5953,15 @@ export default function createViewState(opts: ViewStateOptions): {
5854
5953
  lastTrackDragY: undefined | number;
5855
5954
  volatileError: unknown;
5856
5955
  scaleFactor: number;
5956
+ targetBpPerPx: number | undefined;
5857
5957
  trackRefs: Record<string, HTMLDivElement>;
5858
5958
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
5859
5959
  coarseTotalBp: number;
5860
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5861
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
5960
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5961
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
5962
+ isScalebarRefNameMenuOpen: boolean;
5963
+ scalebarRefNameClickPending: boolean;
5964
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
5862
5965
  } & {
5863
5966
  readonly pinnedTracks: any[];
5864
5967
  readonly unpinnedTracks: any[];
@@ -5912,16 +6015,19 @@ export default function createViewState(opts: ViewStateOptions): {
5912
6015
  setShowCytobands(flag: boolean): void;
5913
6016
  setWidth(newWidth: number): void;
5914
6017
  setError(error: unknown): void;
6018
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
6019
+ setScalebarRefNameClickPending(pending: boolean): void;
5915
6020
  setHideHeader(b: boolean): void;
5916
6021
  setHideHeaderOverview(b: boolean): void;
5917
6022
  setHideNoTracksActive(b: boolean): void;
5918
6023
  setShowGridlines(b: boolean): void;
5919
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
5920
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
5921
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
6024
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
6025
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
6026
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
6027
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
5922
6028
  scrollTo(offsetPx: number): number;
5923
6029
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
5924
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
6030
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5925
6031
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
5926
6032
  setNewView(bpPerPx: number, offsetPx: number): void;
5927
6033
  horizontallyFlip(): void;
@@ -5938,7 +6044,7 @@ export default function createViewState(opts: ViewStateOptions): {
5938
6044
  setShowCenterLine(b: boolean): void;
5939
6045
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
5940
6046
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
5941
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
6047
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
5942
6048
  assemblyName: string;
5943
6049
  refName: string;
5944
6050
  start: number;
@@ -5951,9 +6057,10 @@ export default function createViewState(opts: ViewStateOptions): {
5951
6057
  setDraggingTrackId(idx?: string): void;
5952
6058
  setLastTrackDragY(y: number): void;
5953
6059
  setScaleFactor(factor: number): void;
6060
+ setTargetBpPerPx(target: number | undefined): void;
5954
6061
  clearView(): void;
5955
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
5956
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
6062
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
6063
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
5957
6064
  } & {
5958
6065
  slide: (viewWidths: number) => void;
5959
6066
  } & {
@@ -5972,10 +6079,13 @@ export default function createViewState(opts: ViewStateOptions): {
5972
6079
  readonly visibleLocStrings: string;
5973
6080
  readonly coarseVisibleLocStrings: string;
5974
6081
  readonly coarseTotalBpDisplayStr: string;
6082
+ readonly effectiveBpPerPx: number;
6083
+ readonly effectiveTotalBp: number;
6084
+ readonly effectiveTotalBpDisplayStr: string;
5975
6085
  } & {
5976
6086
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
5977
6087
  } & {
5978
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
6088
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
5979
6089
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
5980
6090
  navToSearchString({ input, assembly, }: {
5981
6091
  input: string;
@@ -5983,8 +6093,8 @@ export default function createViewState(opts: ViewStateOptions): {
5983
6093
  }): Promise<void>;
5984
6094
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
5985
6095
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
5986
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
5987
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
6096
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
6097
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
5988
6098
  } & {
5989
6099
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
5990
6100
  bpToPx({ refName, coord, regionNumber, }: {
@@ -6020,7 +6130,7 @@ export default function createViewState(opts: ViewStateOptions): {
6020
6130
  } | undefined;
6021
6131
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
6022
6132
  } & {
6023
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
6133
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
6024
6134
  } & {
6025
6135
  afterCreate(): void;
6026
6136
  afterAttach(): void;
@@ -6043,10 +6153,10 @@ export default function createViewState(opts: ViewStateOptions): {
6043
6153
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6044
6154
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6045
6155
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
6046
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
6156
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
6047
6157
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6048
6158
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6049
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
6159
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
6050
6160
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
6051
6161
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6052
6162
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -6066,10 +6176,10 @@ export default function createViewState(opts: ViewStateOptions): {
6066
6176
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6067
6177
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
6068
6178
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
6069
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
6179
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
6070
6180
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6071
6181
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
6072
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
6182
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
6073
6183
  }>>>;
6074
6184
  removeView(): void;
6075
6185
  } & {
@@ -8965,9 +9075,9 @@ export default function createViewState(opts: ViewStateOptions): {
8965
9075
  } & {
8966
9076
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
8967
9077
  } & {
8968
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
8969
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
8970
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
9078
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
9079
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
9080
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
8971
9081
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
8972
9082
  removeSnackbarMessage(message: string): void;
8973
9083
  } & {
@@ -8994,10 +9104,10 @@ export default function createViewState(opts: ViewStateOptions): {
8994
9104
  showCytobandsSetting: boolean;
8995
9105
  trackLabels: string;
8996
9106
  showGridlines: boolean;
8997
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
9107
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
8998
9108
  colorByCDS: boolean;
8999
9109
  showTrackOutlines: boolean;
9000
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
9110
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
9001
9111
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
9002
9112
  width: number;
9003
9113
  } & {
@@ -9013,11 +9123,15 @@ export default function createViewState(opts: ViewStateOptions): {
9013
9123
  lastTrackDragY: undefined | number;
9014
9124
  volatileError: unknown;
9015
9125
  scaleFactor: number;
9126
+ targetBpPerPx: number | undefined;
9016
9127
  trackRefs: Record<string, HTMLDivElement>;
9017
9128
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9018
9129
  coarseTotalBp: number;
9019
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9020
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9130
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9131
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9132
+ isScalebarRefNameMenuOpen: boolean;
9133
+ scalebarRefNameClickPending: boolean;
9134
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
9021
9135
  } & {
9022
9136
  readonly pinnedTracks: any[];
9023
9137
  readonly unpinnedTracks: any[];
@@ -9071,16 +9185,19 @@ export default function createViewState(opts: ViewStateOptions): {
9071
9185
  setShowCytobands(flag: boolean): void;
9072
9186
  setWidth(newWidth: number): void;
9073
9187
  setError(error: unknown): void;
9188
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
9189
+ setScalebarRefNameClickPending(pending: boolean): void;
9074
9190
  setHideHeader(b: boolean): void;
9075
9191
  setHideHeaderOverview(b: boolean): void;
9076
9192
  setHideNoTracksActive(b: boolean): void;
9077
9193
  setShowGridlines(b: boolean): void;
9078
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9079
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
9080
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9194
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9195
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
9196
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9197
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
9081
9198
  scrollTo(offsetPx: number): number;
9082
9199
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
9083
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9200
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9084
9201
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
9085
9202
  setNewView(bpPerPx: number, offsetPx: number): void;
9086
9203
  horizontallyFlip(): void;
@@ -9097,7 +9214,7 @@ export default function createViewState(opts: ViewStateOptions): {
9097
9214
  setShowCenterLine(b: boolean): void;
9098
9215
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
9099
9216
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
9100
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
9217
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
9101
9218
  assemblyName: string;
9102
9219
  refName: string;
9103
9220
  start: number;
@@ -9110,9 +9227,10 @@ export default function createViewState(opts: ViewStateOptions): {
9110
9227
  setDraggingTrackId(idx?: string): void;
9111
9228
  setLastTrackDragY(y: number): void;
9112
9229
  setScaleFactor(factor: number): void;
9230
+ setTargetBpPerPx(target: number | undefined): void;
9113
9231
  clearView(): void;
9114
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
9115
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
9232
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
9233
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
9116
9234
  } & {
9117
9235
  slide: (viewWidths: number) => void;
9118
9236
  } & {
@@ -9131,10 +9249,13 @@ export default function createViewState(opts: ViewStateOptions): {
9131
9249
  readonly visibleLocStrings: string;
9132
9250
  readonly coarseVisibleLocStrings: string;
9133
9251
  readonly coarseTotalBpDisplayStr: string;
9252
+ readonly effectiveBpPerPx: number;
9253
+ readonly effectiveTotalBp: number;
9254
+ readonly effectiveTotalBpDisplayStr: string;
9134
9255
  } & {
9135
9256
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
9136
9257
  } & {
9137
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9258
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9138
9259
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
9139
9260
  navToSearchString({ input, assembly, }: {
9140
9261
  input: string;
@@ -9142,8 +9263,8 @@ export default function createViewState(opts: ViewStateOptions): {
9142
9263
  }): Promise<void>;
9143
9264
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
9144
9265
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
9145
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
9146
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
9266
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
9267
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
9147
9268
  } & {
9148
9269
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
9149
9270
  bpToPx({ refName, coord, regionNumber, }: {
@@ -9179,7 +9300,7 @@ export default function createViewState(opts: ViewStateOptions): {
9179
9300
  } | undefined;
9180
9301
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9181
9302
  } & {
9182
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9303
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9183
9304
  } & {
9184
9305
  afterCreate(): void;
9185
9306
  afterAttach(): void;
@@ -9202,10 +9323,10 @@ export default function createViewState(opts: ViewStateOptions): {
9202
9323
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9203
9324
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9204
9325
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9205
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
9326
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9206
9327
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9207
9328
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9208
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
9329
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9209
9330
  }, {
9210
9331
  width: number;
9211
9332
  } & {
@@ -9221,11 +9342,15 @@ export default function createViewState(opts: ViewStateOptions): {
9221
9342
  lastTrackDragY: undefined | number;
9222
9343
  volatileError: unknown;
9223
9344
  scaleFactor: number;
9345
+ targetBpPerPx: number | undefined;
9224
9346
  trackRefs: Record<string, HTMLDivElement>;
9225
9347
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9226
9348
  coarseTotalBp: number;
9227
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9228
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9349
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9350
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9351
+ isScalebarRefNameMenuOpen: boolean;
9352
+ scalebarRefNameClickPending: boolean;
9353
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
9229
9354
  } & {
9230
9355
  readonly pinnedTracks: any[];
9231
9356
  readonly unpinnedTracks: any[];
@@ -9279,16 +9404,19 @@ export default function createViewState(opts: ViewStateOptions): {
9279
9404
  setShowCytobands(flag: boolean): void;
9280
9405
  setWidth(newWidth: number): void;
9281
9406
  setError(error: unknown): void;
9407
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
9408
+ setScalebarRefNameClickPending(pending: boolean): void;
9282
9409
  setHideHeader(b: boolean): void;
9283
9410
  setHideHeaderOverview(b: boolean): void;
9284
9411
  setHideNoTracksActive(b: boolean): void;
9285
9412
  setShowGridlines(b: boolean): void;
9286
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9287
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
9288
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9413
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9414
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
9415
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9416
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
9289
9417
  scrollTo(offsetPx: number): number;
9290
9418
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
9291
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9419
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9292
9420
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
9293
9421
  setNewView(bpPerPx: number, offsetPx: number): void;
9294
9422
  horizontallyFlip(): void;
@@ -9305,7 +9433,7 @@ export default function createViewState(opts: ViewStateOptions): {
9305
9433
  setShowCenterLine(b: boolean): void;
9306
9434
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
9307
9435
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
9308
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
9436
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
9309
9437
  assemblyName: string;
9310
9438
  refName: string;
9311
9439
  start: number;
@@ -9318,9 +9446,10 @@ export default function createViewState(opts: ViewStateOptions): {
9318
9446
  setDraggingTrackId(idx?: string): void;
9319
9447
  setLastTrackDragY(y: number): void;
9320
9448
  setScaleFactor(factor: number): void;
9449
+ setTargetBpPerPx(target: number | undefined): void;
9321
9450
  clearView(): void;
9322
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
9323
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
9451
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
9452
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
9324
9453
  } & {
9325
9454
  slide: (viewWidths: number) => void;
9326
9455
  } & {
@@ -9339,10 +9468,13 @@ export default function createViewState(opts: ViewStateOptions): {
9339
9468
  readonly visibleLocStrings: string;
9340
9469
  readonly coarseVisibleLocStrings: string;
9341
9470
  readonly coarseTotalBpDisplayStr: string;
9471
+ readonly effectiveBpPerPx: number;
9472
+ readonly effectiveTotalBp: number;
9473
+ readonly effectiveTotalBpDisplayStr: string;
9342
9474
  } & {
9343
9475
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
9344
9476
  } & {
9345
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9477
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9346
9478
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
9347
9479
  navToSearchString({ input, assembly, }: {
9348
9480
  input: string;
@@ -9350,8 +9482,8 @@ export default function createViewState(opts: ViewStateOptions): {
9350
9482
  }): Promise<void>;
9351
9483
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
9352
9484
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
9353
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
9354
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
9485
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
9486
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
9355
9487
  } & {
9356
9488
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
9357
9489
  bpToPx({ refName, coord, regionNumber, }: {
@@ -9387,7 +9519,7 @@ export default function createViewState(opts: ViewStateOptions): {
9387
9519
  } | undefined;
9388
9520
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9389
9521
  } & {
9390
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9522
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9391
9523
  } & {
9392
9524
  afterCreate(): void;
9393
9525
  afterAttach(): void;
@@ -9410,10 +9542,10 @@ export default function createViewState(opts: ViewStateOptions): {
9410
9542
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9411
9543
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9412
9544
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9413
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
9545
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9414
9546
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9415
9547
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9416
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
9548
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9417
9549
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
9418
9550
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9419
9551
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -9433,10 +9565,10 @@ export default function createViewState(opts: ViewStateOptions): {
9433
9565
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9434
9566
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9435
9567
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9436
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
9568
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9437
9569
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9438
9570
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9439
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
9571
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9440
9572
  }>>>)[];
9441
9573
  renderProps(): {
9442
9574
  theme: any;
@@ -9460,10 +9592,10 @@ export default function createViewState(opts: ViewStateOptions): {
9460
9592
  showCytobandsSetting: boolean;
9461
9593
  trackLabels: string;
9462
9594
  showGridlines: boolean;
9463
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
9595
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
9464
9596
  colorByCDS: boolean;
9465
9597
  showTrackOutlines: boolean;
9466
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
9598
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
9467
9599
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
9468
9600
  width: number;
9469
9601
  } & {
@@ -9479,11 +9611,15 @@ export default function createViewState(opts: ViewStateOptions): {
9479
9611
  lastTrackDragY: undefined | number;
9480
9612
  volatileError: unknown;
9481
9613
  scaleFactor: number;
9614
+ targetBpPerPx: number | undefined;
9482
9615
  trackRefs: Record<string, HTMLDivElement>;
9483
9616
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9484
9617
  coarseTotalBp: number;
9485
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9486
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9618
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9619
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9620
+ isScalebarRefNameMenuOpen: boolean;
9621
+ scalebarRefNameClickPending: boolean;
9622
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
9487
9623
  } & {
9488
9624
  readonly pinnedTracks: any[];
9489
9625
  readonly unpinnedTracks: any[];
@@ -9537,16 +9673,19 @@ export default function createViewState(opts: ViewStateOptions): {
9537
9673
  setShowCytobands(flag: boolean): void;
9538
9674
  setWidth(newWidth: number): void;
9539
9675
  setError(error: unknown): void;
9676
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
9677
+ setScalebarRefNameClickPending(pending: boolean): void;
9540
9678
  setHideHeader(b: boolean): void;
9541
9679
  setHideHeaderOverview(b: boolean): void;
9542
9680
  setHideNoTracksActive(b: boolean): void;
9543
9681
  setShowGridlines(b: boolean): void;
9544
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9545
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
9546
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9682
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9683
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
9684
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9685
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
9547
9686
  scrollTo(offsetPx: number): number;
9548
9687
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
9549
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9688
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9550
9689
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
9551
9690
  setNewView(bpPerPx: number, offsetPx: number): void;
9552
9691
  horizontallyFlip(): void;
@@ -9563,7 +9702,7 @@ export default function createViewState(opts: ViewStateOptions): {
9563
9702
  setShowCenterLine(b: boolean): void;
9564
9703
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
9565
9704
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
9566
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
9705
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
9567
9706
  assemblyName: string;
9568
9707
  refName: string;
9569
9708
  start: number;
@@ -9576,9 +9715,10 @@ export default function createViewState(opts: ViewStateOptions): {
9576
9715
  setDraggingTrackId(idx?: string): void;
9577
9716
  setLastTrackDragY(y: number): void;
9578
9717
  setScaleFactor(factor: number): void;
9718
+ setTargetBpPerPx(target: number | undefined): void;
9579
9719
  clearView(): void;
9580
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
9581
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
9720
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
9721
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
9582
9722
  } & {
9583
9723
  slide: (viewWidths: number) => void;
9584
9724
  } & {
@@ -9597,10 +9737,13 @@ export default function createViewState(opts: ViewStateOptions): {
9597
9737
  readonly visibleLocStrings: string;
9598
9738
  readonly coarseVisibleLocStrings: string;
9599
9739
  readonly coarseTotalBpDisplayStr: string;
9740
+ readonly effectiveBpPerPx: number;
9741
+ readonly effectiveTotalBp: number;
9742
+ readonly effectiveTotalBpDisplayStr: string;
9600
9743
  } & {
9601
9744
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
9602
9745
  } & {
9603
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9746
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9604
9747
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
9605
9748
  navToSearchString({ input, assembly, }: {
9606
9749
  input: string;
@@ -9608,8 +9751,8 @@ export default function createViewState(opts: ViewStateOptions): {
9608
9751
  }): Promise<void>;
9609
9752
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
9610
9753
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
9611
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
9612
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
9754
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
9755
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
9613
9756
  } & {
9614
9757
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
9615
9758
  bpToPx({ refName, coord, regionNumber, }: {
@@ -9645,7 +9788,7 @@ export default function createViewState(opts: ViewStateOptions): {
9645
9788
  } | undefined;
9646
9789
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9647
9790
  } & {
9648
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9791
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9649
9792
  } & {
9650
9793
  afterCreate(): void;
9651
9794
  afterAttach(): void;
@@ -9668,10 +9811,10 @@ export default function createViewState(opts: ViewStateOptions): {
9668
9811
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9669
9812
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9670
9813
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9671
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
9814
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9672
9815
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9673
9816
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9674
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
9817
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9675
9818
  }, {
9676
9819
  width: number;
9677
9820
  } & {
@@ -9687,11 +9830,15 @@ export default function createViewState(opts: ViewStateOptions): {
9687
9830
  lastTrackDragY: undefined | number;
9688
9831
  volatileError: unknown;
9689
9832
  scaleFactor: number;
9833
+ targetBpPerPx: number | undefined;
9690
9834
  trackRefs: Record<string, HTMLDivElement>;
9691
9835
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9692
9836
  coarseTotalBp: number;
9693
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9694
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
9837
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9838
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
9839
+ isScalebarRefNameMenuOpen: boolean;
9840
+ scalebarRefNameClickPending: boolean;
9841
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
9695
9842
  } & {
9696
9843
  readonly pinnedTracks: any[];
9697
9844
  readonly unpinnedTracks: any[];
@@ -9745,16 +9892,19 @@ export default function createViewState(opts: ViewStateOptions): {
9745
9892
  setShowCytobands(flag: boolean): void;
9746
9893
  setWidth(newWidth: number): void;
9747
9894
  setError(error: unknown): void;
9895
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
9896
+ setScalebarRefNameClickPending(pending: boolean): void;
9748
9897
  setHideHeader(b: boolean): void;
9749
9898
  setHideHeaderOverview(b: boolean): void;
9750
9899
  setHideNoTracksActive(b: boolean): void;
9751
9900
  setShowGridlines(b: boolean): void;
9752
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9753
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
9754
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
9901
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9902
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
9903
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
9904
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
9755
9905
  scrollTo(offsetPx: number): number;
9756
9906
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
9757
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9907
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9758
9908
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
9759
9909
  setNewView(bpPerPx: number, offsetPx: number): void;
9760
9910
  horizontallyFlip(): void;
@@ -9771,7 +9921,7 @@ export default function createViewState(opts: ViewStateOptions): {
9771
9921
  setShowCenterLine(b: boolean): void;
9772
9922
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
9773
9923
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
9774
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
9924
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
9775
9925
  assemblyName: string;
9776
9926
  refName: string;
9777
9927
  start: number;
@@ -9784,9 +9934,10 @@ export default function createViewState(opts: ViewStateOptions): {
9784
9934
  setDraggingTrackId(idx?: string): void;
9785
9935
  setLastTrackDragY(y: number): void;
9786
9936
  setScaleFactor(factor: number): void;
9937
+ setTargetBpPerPx(target: number | undefined): void;
9787
9938
  clearView(): void;
9788
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
9789
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
9939
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
9940
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
9790
9941
  } & {
9791
9942
  slide: (viewWidths: number) => void;
9792
9943
  } & {
@@ -9805,10 +9956,13 @@ export default function createViewState(opts: ViewStateOptions): {
9805
9956
  readonly visibleLocStrings: string;
9806
9957
  readonly coarseVisibleLocStrings: string;
9807
9958
  readonly coarseTotalBpDisplayStr: string;
9959
+ readonly effectiveBpPerPx: number;
9960
+ readonly effectiveTotalBp: number;
9961
+ readonly effectiveTotalBpDisplayStr: string;
9808
9962
  } & {
9809
9963
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
9810
9964
  } & {
9811
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
9965
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
9812
9966
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
9813
9967
  navToSearchString({ input, assembly, }: {
9814
9968
  input: string;
@@ -9816,8 +9970,8 @@ export default function createViewState(opts: ViewStateOptions): {
9816
9970
  }): Promise<void>;
9817
9971
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
9818
9972
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
9819
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
9820
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
9973
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
9974
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
9821
9975
  } & {
9822
9976
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
9823
9977
  bpToPx({ refName, coord, regionNumber, }: {
@@ -9853,7 +10007,7 @@ export default function createViewState(opts: ViewStateOptions): {
9853
10007
  } | undefined;
9854
10008
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
9855
10009
  } & {
9856
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
10010
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
9857
10011
  } & {
9858
10012
  afterCreate(): void;
9859
10013
  afterAttach(): void;
@@ -9876,10 +10030,10 @@ export default function createViewState(opts: ViewStateOptions): {
9876
10030
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9877
10031
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9878
10032
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9879
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
10033
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9880
10034
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9881
10035
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9882
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
10036
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9883
10037
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
9884
10038
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9885
10039
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -9899,10 +10053,10 @@ export default function createViewState(opts: ViewStateOptions): {
9899
10053
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9900
10054
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9901
10055
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
9902
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
10056
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
9903
10057
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9904
10058
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
9905
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
10059
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
9906
10060
  }>>>;
9907
10061
  removeView(): void;
9908
10062
  } & {
@@ -11973,9 +12127,9 @@ export default function createViewState(opts: ViewStateOptions): {
11973
12127
  } & {
11974
12128
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
11975
12129
  } & {
11976
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
11977
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
11978
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
12130
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
12131
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
12132
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
11979
12133
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
11980
12134
  removeSnackbarMessage(message: string): void;
11981
12135
  } & {
@@ -12002,10 +12156,10 @@ export default function createViewState(opts: ViewStateOptions): {
12002
12156
  showCytobandsSetting: boolean;
12003
12157
  trackLabels: string;
12004
12158
  showGridlines: boolean;
12005
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
12159
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
12006
12160
  colorByCDS: boolean;
12007
12161
  showTrackOutlines: boolean;
12008
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
12162
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
12009
12163
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
12010
12164
  width: number;
12011
12165
  } & {
@@ -12021,11 +12175,15 @@ export default function createViewState(opts: ViewStateOptions): {
12021
12175
  lastTrackDragY: undefined | number;
12022
12176
  volatileError: unknown;
12023
12177
  scaleFactor: number;
12178
+ targetBpPerPx: number | undefined;
12024
12179
  trackRefs: Record<string, HTMLDivElement>;
12025
12180
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12026
12181
  coarseTotalBp: number;
12027
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12028
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12182
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12183
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12184
+ isScalebarRefNameMenuOpen: boolean;
12185
+ scalebarRefNameClickPending: boolean;
12186
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
12029
12187
  } & {
12030
12188
  readonly pinnedTracks: any[];
12031
12189
  readonly unpinnedTracks: any[];
@@ -12079,16 +12237,19 @@ export default function createViewState(opts: ViewStateOptions): {
12079
12237
  setShowCytobands(flag: boolean): void;
12080
12238
  setWidth(newWidth: number): void;
12081
12239
  setError(error: unknown): void;
12240
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
12241
+ setScalebarRefNameClickPending(pending: boolean): void;
12082
12242
  setHideHeader(b: boolean): void;
12083
12243
  setHideHeaderOverview(b: boolean): void;
12084
12244
  setHideNoTracksActive(b: boolean): void;
12085
12245
  setShowGridlines(b: boolean): void;
12086
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12087
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
12088
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12246
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12247
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
12248
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12249
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
12089
12250
  scrollTo(offsetPx: number): number;
12090
12251
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
12091
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12252
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12092
12253
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
12093
12254
  setNewView(bpPerPx: number, offsetPx: number): void;
12094
12255
  horizontallyFlip(): void;
@@ -12105,7 +12266,7 @@ export default function createViewState(opts: ViewStateOptions): {
12105
12266
  setShowCenterLine(b: boolean): void;
12106
12267
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
12107
12268
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
12108
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
12269
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
12109
12270
  assemblyName: string;
12110
12271
  refName: string;
12111
12272
  start: number;
@@ -12118,9 +12279,10 @@ export default function createViewState(opts: ViewStateOptions): {
12118
12279
  setDraggingTrackId(idx?: string): void;
12119
12280
  setLastTrackDragY(y: number): void;
12120
12281
  setScaleFactor(factor: number): void;
12282
+ setTargetBpPerPx(target: number | undefined): void;
12121
12283
  clearView(): void;
12122
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
12123
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
12284
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
12285
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
12124
12286
  } & {
12125
12287
  slide: (viewWidths: number) => void;
12126
12288
  } & {
@@ -12139,10 +12301,13 @@ export default function createViewState(opts: ViewStateOptions): {
12139
12301
  readonly visibleLocStrings: string;
12140
12302
  readonly coarseVisibleLocStrings: string;
12141
12303
  readonly coarseTotalBpDisplayStr: string;
12304
+ readonly effectiveBpPerPx: number;
12305
+ readonly effectiveTotalBp: number;
12306
+ readonly effectiveTotalBpDisplayStr: string;
12142
12307
  } & {
12143
12308
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
12144
12309
  } & {
12145
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12310
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12146
12311
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
12147
12312
  navToSearchString({ input, assembly, }: {
12148
12313
  input: string;
@@ -12150,8 +12315,8 @@ export default function createViewState(opts: ViewStateOptions): {
12150
12315
  }): Promise<void>;
12151
12316
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
12152
12317
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
12153
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
12154
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
12318
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
12319
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
12155
12320
  } & {
12156
12321
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
12157
12322
  bpToPx({ refName, coord, regionNumber, }: {
@@ -12187,7 +12352,7 @@ export default function createViewState(opts: ViewStateOptions): {
12187
12352
  } | undefined;
12188
12353
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12189
12354
  } & {
12190
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12355
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12191
12356
  } & {
12192
12357
  afterCreate(): void;
12193
12358
  afterAttach(): void;
@@ -12210,10 +12375,10 @@ export default function createViewState(opts: ViewStateOptions): {
12210
12375
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12211
12376
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12212
12377
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12213
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
12378
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12214
12379
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12215
12380
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12216
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
12381
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12217
12382
  }, {
12218
12383
  width: number;
12219
12384
  } & {
@@ -12229,11 +12394,15 @@ export default function createViewState(opts: ViewStateOptions): {
12229
12394
  lastTrackDragY: undefined | number;
12230
12395
  volatileError: unknown;
12231
12396
  scaleFactor: number;
12397
+ targetBpPerPx: number | undefined;
12232
12398
  trackRefs: Record<string, HTMLDivElement>;
12233
12399
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12234
12400
  coarseTotalBp: number;
12235
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12236
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12401
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12402
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12403
+ isScalebarRefNameMenuOpen: boolean;
12404
+ scalebarRefNameClickPending: boolean;
12405
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
12237
12406
  } & {
12238
12407
  readonly pinnedTracks: any[];
12239
12408
  readonly unpinnedTracks: any[];
@@ -12287,16 +12456,19 @@ export default function createViewState(opts: ViewStateOptions): {
12287
12456
  setShowCytobands(flag: boolean): void;
12288
12457
  setWidth(newWidth: number): void;
12289
12458
  setError(error: unknown): void;
12459
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
12460
+ setScalebarRefNameClickPending(pending: boolean): void;
12290
12461
  setHideHeader(b: boolean): void;
12291
12462
  setHideHeaderOverview(b: boolean): void;
12292
12463
  setHideNoTracksActive(b: boolean): void;
12293
12464
  setShowGridlines(b: boolean): void;
12294
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12295
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
12296
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12465
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12466
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
12467
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12468
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
12297
12469
  scrollTo(offsetPx: number): number;
12298
12470
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
12299
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12471
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12300
12472
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
12301
12473
  setNewView(bpPerPx: number, offsetPx: number): void;
12302
12474
  horizontallyFlip(): void;
@@ -12313,7 +12485,7 @@ export default function createViewState(opts: ViewStateOptions): {
12313
12485
  setShowCenterLine(b: boolean): void;
12314
12486
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
12315
12487
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
12316
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
12488
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
12317
12489
  assemblyName: string;
12318
12490
  refName: string;
12319
12491
  start: number;
@@ -12326,9 +12498,10 @@ export default function createViewState(opts: ViewStateOptions): {
12326
12498
  setDraggingTrackId(idx?: string): void;
12327
12499
  setLastTrackDragY(y: number): void;
12328
12500
  setScaleFactor(factor: number): void;
12501
+ setTargetBpPerPx(target: number | undefined): void;
12329
12502
  clearView(): void;
12330
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
12331
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
12503
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
12504
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
12332
12505
  } & {
12333
12506
  slide: (viewWidths: number) => void;
12334
12507
  } & {
@@ -12347,10 +12520,13 @@ export default function createViewState(opts: ViewStateOptions): {
12347
12520
  readonly visibleLocStrings: string;
12348
12521
  readonly coarseVisibleLocStrings: string;
12349
12522
  readonly coarseTotalBpDisplayStr: string;
12523
+ readonly effectiveBpPerPx: number;
12524
+ readonly effectiveTotalBp: number;
12525
+ readonly effectiveTotalBpDisplayStr: string;
12350
12526
  } & {
12351
12527
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
12352
12528
  } & {
12353
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12529
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12354
12530
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
12355
12531
  navToSearchString({ input, assembly, }: {
12356
12532
  input: string;
@@ -12358,8 +12534,8 @@ export default function createViewState(opts: ViewStateOptions): {
12358
12534
  }): Promise<void>;
12359
12535
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
12360
12536
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
12361
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
12362
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
12537
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
12538
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
12363
12539
  } & {
12364
12540
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
12365
12541
  bpToPx({ refName, coord, regionNumber, }: {
@@ -12395,7 +12571,7 @@ export default function createViewState(opts: ViewStateOptions): {
12395
12571
  } | undefined;
12396
12572
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12397
12573
  } & {
12398
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12574
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12399
12575
  } & {
12400
12576
  afterCreate(): void;
12401
12577
  afterAttach(): void;
@@ -12418,10 +12594,10 @@ export default function createViewState(opts: ViewStateOptions): {
12418
12594
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12419
12595
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12420
12596
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12421
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
12597
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12422
12598
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12423
12599
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12424
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
12600
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12425
12601
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
12426
12602
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12427
12603
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -12441,10 +12617,10 @@ export default function createViewState(opts: ViewStateOptions): {
12441
12617
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12442
12618
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12443
12619
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12444
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
12620
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12445
12621
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12446
12622
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12447
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
12623
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12448
12624
  }>>>)[];
12449
12625
  renderProps(): {
12450
12626
  theme: any;
@@ -12468,10 +12644,10 @@ export default function createViewState(opts: ViewStateOptions): {
12468
12644
  showCytobandsSetting: boolean;
12469
12645
  trackLabels: string;
12470
12646
  showGridlines: boolean;
12471
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
12647
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
12472
12648
  colorByCDS: boolean;
12473
12649
  showTrackOutlines: boolean;
12474
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
12650
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
12475
12651
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
12476
12652
  width: number;
12477
12653
  } & {
@@ -12487,11 +12663,15 @@ export default function createViewState(opts: ViewStateOptions): {
12487
12663
  lastTrackDragY: undefined | number;
12488
12664
  volatileError: unknown;
12489
12665
  scaleFactor: number;
12666
+ targetBpPerPx: number | undefined;
12490
12667
  trackRefs: Record<string, HTMLDivElement>;
12491
12668
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12492
12669
  coarseTotalBp: number;
12493
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12494
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12670
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12671
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12672
+ isScalebarRefNameMenuOpen: boolean;
12673
+ scalebarRefNameClickPending: boolean;
12674
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
12495
12675
  } & {
12496
12676
  readonly pinnedTracks: any[];
12497
12677
  readonly unpinnedTracks: any[];
@@ -12545,16 +12725,19 @@ export default function createViewState(opts: ViewStateOptions): {
12545
12725
  setShowCytobands(flag: boolean): void;
12546
12726
  setWidth(newWidth: number): void;
12547
12727
  setError(error: unknown): void;
12728
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
12729
+ setScalebarRefNameClickPending(pending: boolean): void;
12548
12730
  setHideHeader(b: boolean): void;
12549
12731
  setHideHeaderOverview(b: boolean): void;
12550
12732
  setHideNoTracksActive(b: boolean): void;
12551
12733
  setShowGridlines(b: boolean): void;
12552
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12553
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
12554
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12734
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12735
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
12736
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12737
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
12555
12738
  scrollTo(offsetPx: number): number;
12556
12739
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
12557
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12740
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12558
12741
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
12559
12742
  setNewView(bpPerPx: number, offsetPx: number): void;
12560
12743
  horizontallyFlip(): void;
@@ -12571,7 +12754,7 @@ export default function createViewState(opts: ViewStateOptions): {
12571
12754
  setShowCenterLine(b: boolean): void;
12572
12755
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
12573
12756
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
12574
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
12757
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
12575
12758
  assemblyName: string;
12576
12759
  refName: string;
12577
12760
  start: number;
@@ -12584,9 +12767,10 @@ export default function createViewState(opts: ViewStateOptions): {
12584
12767
  setDraggingTrackId(idx?: string): void;
12585
12768
  setLastTrackDragY(y: number): void;
12586
12769
  setScaleFactor(factor: number): void;
12770
+ setTargetBpPerPx(target: number | undefined): void;
12587
12771
  clearView(): void;
12588
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
12589
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
12772
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
12773
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
12590
12774
  } & {
12591
12775
  slide: (viewWidths: number) => void;
12592
12776
  } & {
@@ -12605,10 +12789,13 @@ export default function createViewState(opts: ViewStateOptions): {
12605
12789
  readonly visibleLocStrings: string;
12606
12790
  readonly coarseVisibleLocStrings: string;
12607
12791
  readonly coarseTotalBpDisplayStr: string;
12792
+ readonly effectiveBpPerPx: number;
12793
+ readonly effectiveTotalBp: number;
12794
+ readonly effectiveTotalBpDisplayStr: string;
12608
12795
  } & {
12609
12796
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
12610
12797
  } & {
12611
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12798
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12612
12799
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
12613
12800
  navToSearchString({ input, assembly, }: {
12614
12801
  input: string;
@@ -12616,8 +12803,8 @@ export default function createViewState(opts: ViewStateOptions): {
12616
12803
  }): Promise<void>;
12617
12804
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
12618
12805
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
12619
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
12620
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
12806
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
12807
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
12621
12808
  } & {
12622
12809
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
12623
12810
  bpToPx({ refName, coord, regionNumber, }: {
@@ -12653,7 +12840,7 @@ export default function createViewState(opts: ViewStateOptions): {
12653
12840
  } | undefined;
12654
12841
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12655
12842
  } & {
12656
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12843
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12657
12844
  } & {
12658
12845
  afterCreate(): void;
12659
12846
  afterAttach(): void;
@@ -12676,10 +12863,10 @@ export default function createViewState(opts: ViewStateOptions): {
12676
12863
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12677
12864
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12678
12865
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12679
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
12866
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12680
12867
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12681
12868
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12682
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
12869
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12683
12870
  }, {
12684
12871
  width: number;
12685
12872
  } & {
@@ -12695,11 +12882,15 @@ export default function createViewState(opts: ViewStateOptions): {
12695
12882
  lastTrackDragY: undefined | number;
12696
12883
  volatileError: unknown;
12697
12884
  scaleFactor: number;
12885
+ targetBpPerPx: number | undefined;
12698
12886
  trackRefs: Record<string, HTMLDivElement>;
12699
12887
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12700
12888
  coarseTotalBp: number;
12701
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12702
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
12889
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12890
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
12891
+ isScalebarRefNameMenuOpen: boolean;
12892
+ scalebarRefNameClickPending: boolean;
12893
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
12703
12894
  } & {
12704
12895
  readonly pinnedTracks: any[];
12705
12896
  readonly unpinnedTracks: any[];
@@ -12753,16 +12944,19 @@ export default function createViewState(opts: ViewStateOptions): {
12753
12944
  setShowCytobands(flag: boolean): void;
12754
12945
  setWidth(newWidth: number): void;
12755
12946
  setError(error: unknown): void;
12947
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
12948
+ setScalebarRefNameClickPending(pending: boolean): void;
12756
12949
  setHideHeader(b: boolean): void;
12757
12950
  setHideHeaderOverview(b: boolean): void;
12758
12951
  setHideNoTracksActive(b: boolean): void;
12759
12952
  setShowGridlines(b: boolean): void;
12760
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12761
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
12762
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
12953
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12954
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
12955
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
12956
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
12763
12957
  scrollTo(offsetPx: number): number;
12764
12958
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
12765
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
12959
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12766
12960
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
12767
12961
  setNewView(bpPerPx: number, offsetPx: number): void;
12768
12962
  horizontallyFlip(): void;
@@ -12779,7 +12973,7 @@ export default function createViewState(opts: ViewStateOptions): {
12779
12973
  setShowCenterLine(b: boolean): void;
12780
12974
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
12781
12975
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
12782
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
12976
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
12783
12977
  assemblyName: string;
12784
12978
  refName: string;
12785
12979
  start: number;
@@ -12792,9 +12986,10 @@ export default function createViewState(opts: ViewStateOptions): {
12792
12986
  setDraggingTrackId(idx?: string): void;
12793
12987
  setLastTrackDragY(y: number): void;
12794
12988
  setScaleFactor(factor: number): void;
12989
+ setTargetBpPerPx(target: number | undefined): void;
12795
12990
  clearView(): void;
12796
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
12797
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
12991
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
12992
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
12798
12993
  } & {
12799
12994
  slide: (viewWidths: number) => void;
12800
12995
  } & {
@@ -12813,10 +13008,13 @@ export default function createViewState(opts: ViewStateOptions): {
12813
13008
  readonly visibleLocStrings: string;
12814
13009
  readonly coarseVisibleLocStrings: string;
12815
13010
  readonly coarseTotalBpDisplayStr: string;
13011
+ readonly effectiveBpPerPx: number;
13012
+ readonly effectiveTotalBp: number;
13013
+ readonly effectiveTotalBpDisplayStr: string;
12816
13014
  } & {
12817
13015
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
12818
13016
  } & {
12819
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
13017
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
12820
13018
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
12821
13019
  navToSearchString({ input, assembly, }: {
12822
13020
  input: string;
@@ -12824,8 +13022,8 @@ export default function createViewState(opts: ViewStateOptions): {
12824
13022
  }): Promise<void>;
12825
13023
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
12826
13024
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
12827
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
12828
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
13025
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
13026
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
12829
13027
  } & {
12830
13028
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
12831
13029
  bpToPx({ refName, coord, regionNumber, }: {
@@ -12861,7 +13059,7 @@ export default function createViewState(opts: ViewStateOptions): {
12861
13059
  } | undefined;
12862
13060
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
12863
13061
  } & {
12864
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
13062
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
12865
13063
  } & {
12866
13064
  afterCreate(): void;
12867
13065
  afterAttach(): void;
@@ -12884,10 +13082,10 @@ export default function createViewState(opts: ViewStateOptions): {
12884
13082
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12885
13083
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12886
13084
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12887
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
13085
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12888
13086
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12889
13087
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12890
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
13088
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12891
13089
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
12892
13090
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12893
13091
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -12907,10 +13105,10 @@ export default function createViewState(opts: ViewStateOptions): {
12907
13105
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12908
13106
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
12909
13107
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
12910
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
13108
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
12911
13109
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12912
13110
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12913
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
13111
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
12914
13112
  }>>>;
12915
13113
  removeView(): void;
12916
13114
  } & {
@@ -15218,9 +15416,9 @@ export default function createViewState(opts: ViewStateOptions): {
15218
15416
  } & {
15219
15417
  readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
15220
15418
  } & {
15221
- notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
15222
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
15223
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
15419
+ notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
15420
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
15421
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
15224
15422
  popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
15225
15423
  removeSnackbarMessage(message: string): void;
15226
15424
  } & {
@@ -15247,10 +15445,10 @@ export default function createViewState(opts: ViewStateOptions): {
15247
15445
  showCytobandsSetting: boolean;
15248
15446
  trackLabels: string;
15249
15447
  showGridlines: boolean;
15250
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
15448
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
15251
15449
  colorByCDS: boolean;
15252
15450
  showTrackOutlines: boolean;
15253
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
15451
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
15254
15452
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
15255
15453
  width: number;
15256
15454
  } & {
@@ -15266,11 +15464,15 @@ export default function createViewState(opts: ViewStateOptions): {
15266
15464
  lastTrackDragY: undefined | number;
15267
15465
  volatileError: unknown;
15268
15466
  scaleFactor: number;
15467
+ targetBpPerPx: number | undefined;
15269
15468
  trackRefs: Record<string, HTMLDivElement>;
15270
15469
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15271
15470
  coarseTotalBp: number;
15272
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15273
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15471
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15472
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15473
+ isScalebarRefNameMenuOpen: boolean;
15474
+ scalebarRefNameClickPending: boolean;
15475
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
15274
15476
  } & {
15275
15477
  readonly pinnedTracks: any[];
15276
15478
  readonly unpinnedTracks: any[];
@@ -15324,16 +15526,19 @@ export default function createViewState(opts: ViewStateOptions): {
15324
15526
  setShowCytobands(flag: boolean): void;
15325
15527
  setWidth(newWidth: number): void;
15326
15528
  setError(error: unknown): void;
15529
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
15530
+ setScalebarRefNameClickPending(pending: boolean): void;
15327
15531
  setHideHeader(b: boolean): void;
15328
15532
  setHideHeaderOverview(b: boolean): void;
15329
15533
  setHideNoTracksActive(b: boolean): void;
15330
15534
  setShowGridlines(b: boolean): void;
15331
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
15332
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
15333
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
15535
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
15536
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
15537
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
15538
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
15334
15539
  scrollTo(offsetPx: number): number;
15335
15540
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
15336
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
15541
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15337
15542
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
15338
15543
  setNewView(bpPerPx: number, offsetPx: number): void;
15339
15544
  horizontallyFlip(): void;
@@ -15350,7 +15555,7 @@ export default function createViewState(opts: ViewStateOptions): {
15350
15555
  setShowCenterLine(b: boolean): void;
15351
15556
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
15352
15557
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
15353
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
15558
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
15354
15559
  assemblyName: string;
15355
15560
  refName: string;
15356
15561
  start: number;
@@ -15363,9 +15568,10 @@ export default function createViewState(opts: ViewStateOptions): {
15363
15568
  setDraggingTrackId(idx?: string): void;
15364
15569
  setLastTrackDragY(y: number): void;
15365
15570
  setScaleFactor(factor: number): void;
15571
+ setTargetBpPerPx(target: number | undefined): void;
15366
15572
  clearView(): void;
15367
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
15368
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
15573
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
15574
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
15369
15575
  } & {
15370
15576
  slide: (viewWidths: number) => void;
15371
15577
  } & {
@@ -15384,10 +15590,13 @@ export default function createViewState(opts: ViewStateOptions): {
15384
15590
  readonly visibleLocStrings: string;
15385
15591
  readonly coarseVisibleLocStrings: string;
15386
15592
  readonly coarseTotalBpDisplayStr: string;
15593
+ readonly effectiveBpPerPx: number;
15594
+ readonly effectiveTotalBp: number;
15595
+ readonly effectiveTotalBpDisplayStr: string;
15387
15596
  } & {
15388
15597
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
15389
15598
  } & {
15390
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
15599
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15391
15600
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
15392
15601
  navToSearchString({ input, assembly, }: {
15393
15602
  input: string;
@@ -15395,8 +15604,8 @@ export default function createViewState(opts: ViewStateOptions): {
15395
15604
  }): Promise<void>;
15396
15605
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
15397
15606
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
15398
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
15399
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
15607
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
15608
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
15400
15609
  } & {
15401
15610
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
15402
15611
  bpToPx({ refName, coord, regionNumber, }: {
@@ -15432,7 +15641,7 @@ export default function createViewState(opts: ViewStateOptions): {
15432
15641
  } | undefined;
15433
15642
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15434
15643
  } & {
15435
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
15644
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
15436
15645
  } & {
15437
15646
  afterCreate(): void;
15438
15647
  afterAttach(): void;
@@ -15455,10 +15664,10 @@ export default function createViewState(opts: ViewStateOptions): {
15455
15664
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15456
15665
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15457
15666
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
15458
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
15667
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
15459
15668
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15460
15669
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15461
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
15670
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
15462
15671
  }, {
15463
15672
  width: number;
15464
15673
  } & {
@@ -15474,11 +15683,15 @@ export default function createViewState(opts: ViewStateOptions): {
15474
15683
  lastTrackDragY: undefined | number;
15475
15684
  volatileError: unknown;
15476
15685
  scaleFactor: number;
15686
+ targetBpPerPx: number | undefined;
15477
15687
  trackRefs: Record<string, HTMLDivElement>;
15478
15688
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15479
15689
  coarseTotalBp: number;
15480
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15481
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15690
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15691
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15692
+ isScalebarRefNameMenuOpen: boolean;
15693
+ scalebarRefNameClickPending: boolean;
15694
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
15482
15695
  } & {
15483
15696
  readonly pinnedTracks: any[];
15484
15697
  readonly unpinnedTracks: any[];
@@ -15532,16 +15745,19 @@ export default function createViewState(opts: ViewStateOptions): {
15532
15745
  setShowCytobands(flag: boolean): void;
15533
15746
  setWidth(newWidth: number): void;
15534
15747
  setError(error: unknown): void;
15748
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
15749
+ setScalebarRefNameClickPending(pending: boolean): void;
15535
15750
  setHideHeader(b: boolean): void;
15536
15751
  setHideHeaderOverview(b: boolean): void;
15537
15752
  setHideNoTracksActive(b: boolean): void;
15538
15753
  setShowGridlines(b: boolean): void;
15539
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
15540
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
15541
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
15754
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
15755
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
15756
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
15757
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
15542
15758
  scrollTo(offsetPx: number): number;
15543
15759
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
15544
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
15760
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15545
15761
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
15546
15762
  setNewView(bpPerPx: number, offsetPx: number): void;
15547
15763
  horizontallyFlip(): void;
@@ -15558,7 +15774,7 @@ export default function createViewState(opts: ViewStateOptions): {
15558
15774
  setShowCenterLine(b: boolean): void;
15559
15775
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
15560
15776
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
15561
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
15777
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
15562
15778
  assemblyName: string;
15563
15779
  refName: string;
15564
15780
  start: number;
@@ -15571,9 +15787,10 @@ export default function createViewState(opts: ViewStateOptions): {
15571
15787
  setDraggingTrackId(idx?: string): void;
15572
15788
  setLastTrackDragY(y: number): void;
15573
15789
  setScaleFactor(factor: number): void;
15790
+ setTargetBpPerPx(target: number | undefined): void;
15574
15791
  clearView(): void;
15575
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
15576
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
15792
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
15793
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
15577
15794
  } & {
15578
15795
  slide: (viewWidths: number) => void;
15579
15796
  } & {
@@ -15592,10 +15809,13 @@ export default function createViewState(opts: ViewStateOptions): {
15592
15809
  readonly visibleLocStrings: string;
15593
15810
  readonly coarseVisibleLocStrings: string;
15594
15811
  readonly coarseTotalBpDisplayStr: string;
15812
+ readonly effectiveBpPerPx: number;
15813
+ readonly effectiveTotalBp: number;
15814
+ readonly effectiveTotalBpDisplayStr: string;
15595
15815
  } & {
15596
15816
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
15597
15817
  } & {
15598
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
15818
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15599
15819
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
15600
15820
  navToSearchString({ input, assembly, }: {
15601
15821
  input: string;
@@ -15603,8 +15823,8 @@ export default function createViewState(opts: ViewStateOptions): {
15603
15823
  }): Promise<void>;
15604
15824
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
15605
15825
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
15606
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
15607
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
15826
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
15827
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
15608
15828
  } & {
15609
15829
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
15610
15830
  bpToPx({ refName, coord, regionNumber, }: {
@@ -15640,7 +15860,7 @@ export default function createViewState(opts: ViewStateOptions): {
15640
15860
  } | undefined;
15641
15861
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15642
15862
  } & {
15643
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
15863
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
15644
15864
  } & {
15645
15865
  afterCreate(): void;
15646
15866
  afterAttach(): void;
@@ -15663,10 +15883,10 @@ export default function createViewState(opts: ViewStateOptions): {
15663
15883
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15664
15884
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15665
15885
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
15666
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
15886
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
15667
15887
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15668
15888
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15669
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
15889
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
15670
15890
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
15671
15891
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15672
15892
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -15686,10 +15906,10 @@ export default function createViewState(opts: ViewStateOptions): {
15686
15906
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15687
15907
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15688
15908
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
15689
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
15909
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
15690
15910
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15691
15911
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15692
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
15912
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
15693
15913
  }>>>)[];
15694
15914
  renderProps(): {
15695
15915
  theme: any;
@@ -15713,10 +15933,10 @@ export default function createViewState(opts: ViewStateOptions): {
15713
15933
  showCytobandsSetting: boolean;
15714
15934
  trackLabels: string;
15715
15935
  showGridlines: boolean;
15716
- highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>>;
15936
+ highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
15717
15937
  colorByCDS: boolean;
15718
15938
  showTrackOutlines: boolean;
15719
- init: (import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>>) | undefined;
15939
+ init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
15720
15940
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
15721
15941
  width: number;
15722
15942
  } & {
@@ -15732,11 +15952,15 @@ export default function createViewState(opts: ViewStateOptions): {
15732
15952
  lastTrackDragY: undefined | number;
15733
15953
  volatileError: unknown;
15734
15954
  scaleFactor: number;
15955
+ targetBpPerPx: number | undefined;
15735
15956
  trackRefs: Record<string, HTMLDivElement>;
15736
15957
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15737
15958
  coarseTotalBp: number;
15738
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15739
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15959
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15960
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
15961
+ isScalebarRefNameMenuOpen: boolean;
15962
+ scalebarRefNameClickPending: boolean;
15963
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
15740
15964
  } & {
15741
15965
  readonly pinnedTracks: any[];
15742
15966
  readonly unpinnedTracks: any[];
@@ -15790,16 +16014,19 @@ export default function createViewState(opts: ViewStateOptions): {
15790
16014
  setShowCytobands(flag: boolean): void;
15791
16015
  setWidth(newWidth: number): void;
15792
16016
  setError(error: unknown): void;
16017
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
16018
+ setScalebarRefNameClickPending(pending: boolean): void;
15793
16019
  setHideHeader(b: boolean): void;
15794
16020
  setHideHeaderOverview(b: boolean): void;
15795
16021
  setHideNoTracksActive(b: boolean): void;
15796
16022
  setShowGridlines(b: boolean): void;
15797
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
15798
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
15799
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
16023
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
16024
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
16025
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
16026
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
15800
16027
  scrollTo(offsetPx: number): number;
15801
16028
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
15802
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
16029
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15803
16030
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
15804
16031
  setNewView(bpPerPx: number, offsetPx: number): void;
15805
16032
  horizontallyFlip(): void;
@@ -15816,7 +16043,7 @@ export default function createViewState(opts: ViewStateOptions): {
15816
16043
  setShowCenterLine(b: boolean): void;
15817
16044
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
15818
16045
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
15819
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
16046
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
15820
16047
  assemblyName: string;
15821
16048
  refName: string;
15822
16049
  start: number;
@@ -15829,9 +16056,10 @@ export default function createViewState(opts: ViewStateOptions): {
15829
16056
  setDraggingTrackId(idx?: string): void;
15830
16057
  setLastTrackDragY(y: number): void;
15831
16058
  setScaleFactor(factor: number): void;
16059
+ setTargetBpPerPx(target: number | undefined): void;
15832
16060
  clearView(): void;
15833
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
15834
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
16061
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
16062
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
15835
16063
  } & {
15836
16064
  slide: (viewWidths: number) => void;
15837
16065
  } & {
@@ -15850,10 +16078,13 @@ export default function createViewState(opts: ViewStateOptions): {
15850
16078
  readonly visibleLocStrings: string;
15851
16079
  readonly coarseVisibleLocStrings: string;
15852
16080
  readonly coarseTotalBpDisplayStr: string;
16081
+ readonly effectiveBpPerPx: number;
16082
+ readonly effectiveTotalBp: number;
16083
+ readonly effectiveTotalBpDisplayStr: string;
15853
16084
  } & {
15854
16085
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
15855
16086
  } & {
15856
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
16087
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
15857
16088
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
15858
16089
  navToSearchString({ input, assembly, }: {
15859
16090
  input: string;
@@ -15861,8 +16092,8 @@ export default function createViewState(opts: ViewStateOptions): {
15861
16092
  }): Promise<void>;
15862
16093
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
15863
16094
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
15864
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
15865
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
16095
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
16096
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
15866
16097
  } & {
15867
16098
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
15868
16099
  bpToPx({ refName, coord, regionNumber, }: {
@@ -15898,7 +16129,7 @@ export default function createViewState(opts: ViewStateOptions): {
15898
16129
  } | undefined;
15899
16130
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15900
16131
  } & {
15901
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
16132
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
15902
16133
  } & {
15903
16134
  afterCreate(): void;
15904
16135
  afterAttach(): void;
@@ -15921,10 +16152,10 @@ export default function createViewState(opts: ViewStateOptions): {
15921
16152
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15922
16153
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15923
16154
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
15924
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
16155
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
15925
16156
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15926
16157
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
15927
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
16158
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
15928
16159
  }, {
15929
16160
  width: number;
15930
16161
  } & {
@@ -15940,11 +16171,15 @@ export default function createViewState(opts: ViewStateOptions): {
15940
16171
  lastTrackDragY: undefined | number;
15941
16172
  volatileError: unknown;
15942
16173
  scaleFactor: number;
16174
+ targetBpPerPx: number | undefined;
15943
16175
  trackRefs: Record<string, HTMLDivElement>;
15944
16176
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
15945
16177
  coarseTotalBp: number;
15946
- leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
15947
- rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
16178
+ leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
16179
+ rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
16180
+ isScalebarRefNameMenuOpen: boolean;
16181
+ scalebarRefNameClickPending: boolean;
16182
+ volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
15948
16183
  } & {
15949
16184
  readonly pinnedTracks: any[];
15950
16185
  readonly unpinnedTracks: any[];
@@ -15998,16 +16233,19 @@ export default function createViewState(opts: ViewStateOptions): {
15998
16233
  setShowCytobands(flag: boolean): void;
15999
16234
  setWidth(newWidth: number): void;
16000
16235
  setError(error: unknown): void;
16236
+ setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
16237
+ setScalebarRefNameClickPending(pending: boolean): void;
16001
16238
  setHideHeader(b: boolean): void;
16002
16239
  setHideHeaderOverview(b: boolean): void;
16003
16240
  setHideNoTracksActive(b: boolean): void;
16004
16241
  setShowGridlines(b: boolean): void;
16005
- addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
16006
- setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
16007
- removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
16242
+ addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
16243
+ setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
16244
+ removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
16245
+ setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
16008
16246
  scrollTo(offsetPx: number): number;
16009
16247
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
16010
- setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
16248
+ setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
16011
16249
  setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
16012
16250
  setNewView(bpPerPx: number, offsetPx: number): void;
16013
16251
  horizontallyFlip(): void;
@@ -16024,7 +16262,7 @@ export default function createViewState(opts: ViewStateOptions): {
16024
16262
  setShowCenterLine(b: boolean): void;
16025
16263
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
16026
16264
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
16027
- getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
16265
+ getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
16028
16266
  assemblyName: string;
16029
16267
  refName: string;
16030
16268
  start: number;
@@ -16037,9 +16275,10 @@ export default function createViewState(opts: ViewStateOptions): {
16037
16275
  setDraggingTrackId(idx?: string): void;
16038
16276
  setLastTrackDragY(y: number): void;
16039
16277
  setScaleFactor(factor: number): void;
16278
+ setTargetBpPerPx(target: number | undefined): void;
16040
16279
  clearView(): void;
16041
- setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
16042
- exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
16280
+ setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
16281
+ exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
16043
16282
  } & {
16044
16283
  slide: (viewWidths: number) => void;
16045
16284
  } & {
@@ -16058,10 +16297,13 @@ export default function createViewState(opts: ViewStateOptions): {
16058
16297
  readonly visibleLocStrings: string;
16059
16298
  readonly coarseVisibleLocStrings: string;
16060
16299
  readonly coarseTotalBpDisplayStr: string;
16300
+ readonly effectiveBpPerPx: number;
16301
+ readonly effectiveTotalBp: number;
16302
+ readonly effectiveTotalBpDisplayStr: string;
16061
16303
  } & {
16062
16304
  setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
16063
16305
  } & {
16064
- moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
16306
+ moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
16065
16307
  navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
16066
16308
  navToSearchString({ input, assembly, }: {
16067
16309
  input: string;
@@ -16069,8 +16311,8 @@ export default function createViewState(opts: ViewStateOptions): {
16069
16311
  }): Promise<void>;
16070
16312
  navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
16071
16313
  navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
16072
- navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
16073
- navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
16314
+ navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
16315
+ navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
16074
16316
  } & {
16075
16317
  rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
16076
16318
  bpToPx({ refName, coord, regionNumber, }: {
@@ -16106,7 +16348,7 @@ export default function createViewState(opts: ViewStateOptions): {
16106
16348
  } | undefined;
16107
16349
  readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
16108
16350
  } & {
16109
- rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
16351
+ rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
16110
16352
  } & {
16111
16353
  afterCreate(): void;
16112
16354
  afterAttach(): void;
@@ -16129,10 +16371,10 @@ export default function createViewState(opts: ViewStateOptions): {
16129
16371
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16130
16372
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
16131
16373
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
16132
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
16374
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
16133
16375
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16134
16376
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16135
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
16377
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
16136
16378
  }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
16137
16379
  id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
16138
16380
  displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -16152,10 +16394,10 @@ export default function createViewState(opts: ViewStateOptions): {
16152
16394
  showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16153
16395
  trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
16154
16396
  showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
16155
- highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
16397
+ highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
16156
16398
  colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16157
16399
  showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16158
- init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
16400
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
16159
16401
  }>>>;
16160
16402
  removeView(): void;
16161
16403
  } & {