@jbrowse/react-linear-genome-view2 4.0.3 → 4.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/createModel/createModel.d.ts +230 -142
- package/esm/createModel/createSessionModel.d.ts +115 -71
- package/esm/createViewState.d.ts +631 -389
- package/esm/version.d.ts +1 -1
- package/esm/version.js +1 -1
- package/package.json +46 -23
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@@ -1855,9 +1855,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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} & {
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readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
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} & {
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notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
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notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
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pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
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notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
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notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
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pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
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popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
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removeSnackbarMessage(message: string): void;
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} & {
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@@ -1884,10 +1884,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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showCytobandsSetting: boolean;
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trackLabels: string;
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showGridlines: boolean;
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highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
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colorByCDS: boolean;
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showTrackOutlines: boolean;
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init: (import("@jbrowse/plugin-linear-genome-view
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init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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width: number;
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} & {
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@@ -1903,11 +1903,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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lastTrackDragY: undefined | number;
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volatileError: unknown;
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scaleFactor: number;
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targetBpPerPx: number | undefined;
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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@@ -1961,16 +1965,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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setError(error: unknown): void;
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setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
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setScalebarRefNameClickPending(pending: boolean): void;
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setHideHeader(b: boolean): void;
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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@@ -1987,7 +1994,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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@@ -2000,9 +2007,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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setDraggingTrackId(idx?: string): void;
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setLastTrackDragY(y: number): void;
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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@@ -2021,10 +2029,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
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readonly visibleLocStrings: string;
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readonly coarseVisibleLocStrings: string;
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readonly coarseTotalBpDisplayStr: string;
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readonly effectiveBpPerPx: number;
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readonly effectiveTotalBp: number;
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readonly effectiveTotalBpDisplayStr: string;
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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} & {
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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navToSearchString({ input, assembly, }: {
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input: string;
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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} & {
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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} & {
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afterCreate(): void;
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afterAttach(): void;
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}, {
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width: number;
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} & {
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lastTrackDragY: undefined | number;
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volatileError: unknown;
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scaleFactor: number;
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targetBpPerPx: number | undefined;
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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setError(error: unknown): void;
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setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
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setScalebarRefNameClickPending(pending: boolean): void;
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setHideHeader(b: boolean): void;
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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setDraggingTrackId(idx?: string): void;
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setLastTrackDragY(y: number): void;
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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readonly visibleLocStrings: string;
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readonly coarseVisibleLocStrings: string;
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readonly coarseTotalBpDisplayStr: string;
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readonly effectiveBpPerPx: number;
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readonly effectiveTotalBp: number;
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readonly effectiveTotalBpDisplayStr: string;
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
2234
2256
|
} & {
|
|
2235
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
2257
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2236
2258
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
2237
2259
|
navToSearchString({ input, assembly, }: {
|
|
2238
2260
|
input: string;
|
|
@@ -2240,8 +2262,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2240
2262
|
}): Promise<void>;
|
|
2241
2263
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
2242
2264
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
2243
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
2244
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
2265
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
2266
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
2245
2267
|
} & {
|
|
2246
2268
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2247
2269
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -2277,7 +2299,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2277
2299
|
} | undefined;
|
|
2278
2300
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2279
2301
|
} & {
|
|
2280
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
2302
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
2281
2303
|
} & {
|
|
2282
2304
|
afterCreate(): void;
|
|
2283
2305
|
afterAttach(): void;
|
|
@@ -2300,10 +2322,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2300
2322
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2301
2323
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2302
2324
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2303
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2325
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2304
2326
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2305
2327
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2306
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2328
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2307
2329
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
2308
2330
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2309
2331
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -2323,10 +2345,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2323
2345
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2324
2346
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2325
2347
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2326
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2348
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2327
2349
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2328
2350
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2329
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2351
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2330
2352
|
}>>>)[];
|
|
2331
2353
|
renderProps(): {
|
|
2332
2354
|
theme: any;
|
|
@@ -2350,10 +2372,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2350
2372
|
showCytobandsSetting: boolean;
|
|
2351
2373
|
trackLabels: string;
|
|
2352
2374
|
showGridlines: boolean;
|
|
2353
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2375
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
2354
2376
|
colorByCDS: boolean;
|
|
2355
2377
|
showTrackOutlines: boolean;
|
|
2356
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
2378
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
2357
2379
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2358
2380
|
width: number;
|
|
2359
2381
|
} & {
|
|
@@ -2369,11 +2391,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2369
2391
|
lastTrackDragY: undefined | number;
|
|
2370
2392
|
volatileError: unknown;
|
|
2371
2393
|
scaleFactor: number;
|
|
2394
|
+
targetBpPerPx: number | undefined;
|
|
2372
2395
|
trackRefs: Record<string, HTMLDivElement>;
|
|
2373
2396
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2374
2397
|
coarseTotalBp: number;
|
|
2375
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2376
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2398
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2399
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2400
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
2401
|
+
scalebarRefNameClickPending: boolean;
|
|
2402
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
2377
2403
|
} & {
|
|
2378
2404
|
readonly pinnedTracks: any[];
|
|
2379
2405
|
readonly unpinnedTracks: any[];
|
|
@@ -2427,16 +2453,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2427
2453
|
setShowCytobands(flag: boolean): void;
|
|
2428
2454
|
setWidth(newWidth: number): void;
|
|
2429
2455
|
setError(error: unknown): void;
|
|
2456
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
2457
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
2430
2458
|
setHideHeader(b: boolean): void;
|
|
2431
2459
|
setHideHeaderOverview(b: boolean): void;
|
|
2432
2460
|
setHideNoTracksActive(b: boolean): void;
|
|
2433
2461
|
setShowGridlines(b: boolean): void;
|
|
2434
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2435
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
2436
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2462
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2463
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
2464
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2465
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
2437
2466
|
scrollTo(offsetPx: number): number;
|
|
2438
2467
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
2439
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
2468
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2440
2469
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
2441
2470
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
2442
2471
|
horizontallyFlip(): void;
|
|
@@ -2453,7 +2482,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2453
2482
|
setShowCenterLine(b: boolean): void;
|
|
2454
2483
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
2455
2484
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
2456
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
2485
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
2457
2486
|
assemblyName: string;
|
|
2458
2487
|
refName: string;
|
|
2459
2488
|
start: number;
|
|
@@ -2466,9 +2495,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2466
2495
|
setDraggingTrackId(idx?: string): void;
|
|
2467
2496
|
setLastTrackDragY(y: number): void;
|
|
2468
2497
|
setScaleFactor(factor: number): void;
|
|
2498
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
2469
2499
|
clearView(): void;
|
|
2470
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
2471
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
2500
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
2501
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
2472
2502
|
} & {
|
|
2473
2503
|
slide: (viewWidths: number) => void;
|
|
2474
2504
|
} & {
|
|
@@ -2487,10 +2517,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2487
2517
|
readonly visibleLocStrings: string;
|
|
2488
2518
|
readonly coarseVisibleLocStrings: string;
|
|
2489
2519
|
readonly coarseTotalBpDisplayStr: string;
|
|
2520
|
+
readonly effectiveBpPerPx: number;
|
|
2521
|
+
readonly effectiveTotalBp: number;
|
|
2522
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
2490
2523
|
} & {
|
|
2491
2524
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
2492
2525
|
} & {
|
|
2493
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
2526
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2494
2527
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
2495
2528
|
navToSearchString({ input, assembly, }: {
|
|
2496
2529
|
input: string;
|
|
@@ -2498,8 +2531,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2498
2531
|
}): Promise<void>;
|
|
2499
2532
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
2500
2533
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
2501
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
2502
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
2534
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
2535
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
2503
2536
|
} & {
|
|
2504
2537
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2505
2538
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -2535,7 +2568,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2535
2568
|
} | undefined;
|
|
2536
2569
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2537
2570
|
} & {
|
|
2538
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
2571
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
2539
2572
|
} & {
|
|
2540
2573
|
afterCreate(): void;
|
|
2541
2574
|
afterAttach(): void;
|
|
@@ -2558,10 +2591,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2558
2591
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2559
2592
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2560
2593
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2561
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2594
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2562
2595
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2563
2596
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2564
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2597
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2565
2598
|
}, {
|
|
2566
2599
|
width: number;
|
|
2567
2600
|
} & {
|
|
@@ -2577,11 +2610,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2577
2610
|
lastTrackDragY: undefined | number;
|
|
2578
2611
|
volatileError: unknown;
|
|
2579
2612
|
scaleFactor: number;
|
|
2613
|
+
targetBpPerPx: number | undefined;
|
|
2580
2614
|
trackRefs: Record<string, HTMLDivElement>;
|
|
2581
2615
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2582
2616
|
coarseTotalBp: number;
|
|
2583
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2584
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
2617
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2618
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
2619
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
2620
|
+
scalebarRefNameClickPending: boolean;
|
|
2621
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
2585
2622
|
} & {
|
|
2586
2623
|
readonly pinnedTracks: any[];
|
|
2587
2624
|
readonly unpinnedTracks: any[];
|
|
@@ -2635,16 +2672,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2635
2672
|
setShowCytobands(flag: boolean): void;
|
|
2636
2673
|
setWidth(newWidth: number): void;
|
|
2637
2674
|
setError(error: unknown): void;
|
|
2675
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
2676
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
2638
2677
|
setHideHeader(b: boolean): void;
|
|
2639
2678
|
setHideHeaderOverview(b: boolean): void;
|
|
2640
2679
|
setHideNoTracksActive(b: boolean): void;
|
|
2641
2680
|
setShowGridlines(b: boolean): void;
|
|
2642
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2643
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
2644
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
2681
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2682
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
2683
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
2684
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
2645
2685
|
scrollTo(offsetPx: number): number;
|
|
2646
2686
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
2647
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
2687
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2648
2688
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
2649
2689
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
2650
2690
|
horizontallyFlip(): void;
|
|
@@ -2661,7 +2701,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2661
2701
|
setShowCenterLine(b: boolean): void;
|
|
2662
2702
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
2663
2703
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
2664
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
2704
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
2665
2705
|
assemblyName: string;
|
|
2666
2706
|
refName: string;
|
|
2667
2707
|
start: number;
|
|
@@ -2674,9 +2714,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2674
2714
|
setDraggingTrackId(idx?: string): void;
|
|
2675
2715
|
setLastTrackDragY(y: number): void;
|
|
2676
2716
|
setScaleFactor(factor: number): void;
|
|
2717
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
2677
2718
|
clearView(): void;
|
|
2678
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
2679
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
2719
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
2720
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
2680
2721
|
} & {
|
|
2681
2722
|
slide: (viewWidths: number) => void;
|
|
2682
2723
|
} & {
|
|
@@ -2695,10 +2736,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2695
2736
|
readonly visibleLocStrings: string;
|
|
2696
2737
|
readonly coarseVisibleLocStrings: string;
|
|
2697
2738
|
readonly coarseTotalBpDisplayStr: string;
|
|
2739
|
+
readonly effectiveBpPerPx: number;
|
|
2740
|
+
readonly effectiveTotalBp: number;
|
|
2741
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
2698
2742
|
} & {
|
|
2699
2743
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
2700
2744
|
} & {
|
|
2701
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
2745
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
2702
2746
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
2703
2747
|
navToSearchString({ input, assembly, }: {
|
|
2704
2748
|
input: string;
|
|
@@ -2706,8 +2750,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2706
2750
|
}): Promise<void>;
|
|
2707
2751
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
2708
2752
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
2709
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
2710
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
2753
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
2754
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
2711
2755
|
} & {
|
|
2712
2756
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2713
2757
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -2743,7 +2787,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2743
2787
|
} | undefined;
|
|
2744
2788
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
2745
2789
|
} & {
|
|
2746
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
2790
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
2747
2791
|
} & {
|
|
2748
2792
|
afterCreate(): void;
|
|
2749
2793
|
afterAttach(): void;
|
|
@@ -2766,10 +2810,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2766
2810
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2767
2811
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2768
2812
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2769
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2813
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2770
2814
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2771
2815
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2772
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2816
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2773
2817
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
2774
2818
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2775
2819
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -2789,10 +2833,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2789
2833
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2790
2834
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2791
2835
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2792
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2836
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
2793
2837
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2794
2838
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2795
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
2839
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
2796
2840
|
}>>>;
|
|
2797
2841
|
removeView(): void;
|
|
2798
2842
|
} & {
|
|
@@ -5100,9 +5144,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5100
5144
|
} & {
|
|
5101
5145
|
readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
|
|
5102
5146
|
} & {
|
|
5103
|
-
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
5104
|
-
notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
|
|
5105
|
-
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel,
|
|
5147
|
+
notify(message: string, level?: import("@jbrowse/core/util").NotificationLevel, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
|
|
5148
|
+
notifyError(errorMessage: string, error?: unknown, extra?: unknown, action?: import("@jbrowse/core/util").SnackAction): void;
|
|
5149
|
+
pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util").NotificationLevel, actions?: import("@jbrowse/core/util").SnackAction[]): void;
|
|
5106
5150
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
5107
5151
|
removeSnackbarMessage(message: string): void;
|
|
5108
5152
|
} & {
|
|
@@ -5129,10 +5173,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5129
5173
|
showCytobandsSetting: boolean;
|
|
5130
5174
|
trackLabels: string;
|
|
5131
5175
|
showGridlines: boolean;
|
|
5132
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5176
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
5133
5177
|
colorByCDS: boolean;
|
|
5134
5178
|
showTrackOutlines: boolean;
|
|
5135
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
5179
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
5136
5180
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
5137
5181
|
width: number;
|
|
5138
5182
|
} & {
|
|
@@ -5148,11 +5192,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5148
5192
|
lastTrackDragY: undefined | number;
|
|
5149
5193
|
volatileError: unknown;
|
|
5150
5194
|
scaleFactor: number;
|
|
5195
|
+
targetBpPerPx: number | undefined;
|
|
5151
5196
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5152
5197
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5153
5198
|
coarseTotalBp: number;
|
|
5154
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5155
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5199
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5200
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5201
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
5202
|
+
scalebarRefNameClickPending: boolean;
|
|
5203
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5156
5204
|
} & {
|
|
5157
5205
|
readonly pinnedTracks: any[];
|
|
5158
5206
|
readonly unpinnedTracks: any[];
|
|
@@ -5206,16 +5254,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5206
5254
|
setShowCytobands(flag: boolean): void;
|
|
5207
5255
|
setWidth(newWidth: number): void;
|
|
5208
5256
|
setError(error: unknown): void;
|
|
5257
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
5258
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
5209
5259
|
setHideHeader(b: boolean): void;
|
|
5210
5260
|
setHideHeaderOverview(b: boolean): void;
|
|
5211
5261
|
setHideNoTracksActive(b: boolean): void;
|
|
5212
5262
|
setShowGridlines(b: boolean): void;
|
|
5213
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5214
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5215
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5263
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5264
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5265
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5266
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5216
5267
|
scrollTo(offsetPx: number): number;
|
|
5217
5268
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5218
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5269
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5219
5270
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5220
5271
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5221
5272
|
horizontallyFlip(): void;
|
|
@@ -5232,7 +5283,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5232
5283
|
setShowCenterLine(b: boolean): void;
|
|
5233
5284
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5234
5285
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5235
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5286
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5236
5287
|
assemblyName: string;
|
|
5237
5288
|
refName: string;
|
|
5238
5289
|
start: number;
|
|
@@ -5245,9 +5296,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5245
5296
|
setDraggingTrackId(idx?: string): void;
|
|
5246
5297
|
setLastTrackDragY(y: number): void;
|
|
5247
5298
|
setScaleFactor(factor: number): void;
|
|
5299
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
5248
5300
|
clearView(): void;
|
|
5249
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5250
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5301
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5302
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5251
5303
|
} & {
|
|
5252
5304
|
slide: (viewWidths: number) => void;
|
|
5253
5305
|
} & {
|
|
@@ -5266,10 +5318,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5266
5318
|
readonly visibleLocStrings: string;
|
|
5267
5319
|
readonly coarseVisibleLocStrings: string;
|
|
5268
5320
|
readonly coarseTotalBpDisplayStr: string;
|
|
5321
|
+
readonly effectiveBpPerPx: number;
|
|
5322
|
+
readonly effectiveTotalBp: number;
|
|
5323
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
5269
5324
|
} & {
|
|
5270
5325
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5271
5326
|
} & {
|
|
5272
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5327
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5273
5328
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5274
5329
|
navToSearchString({ input, assembly, }: {
|
|
5275
5330
|
input: string;
|
|
@@ -5277,8 +5332,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5277
5332
|
}): Promise<void>;
|
|
5278
5333
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5279
5334
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5280
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5281
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5335
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5336
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5282
5337
|
} & {
|
|
5283
5338
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5284
5339
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5314,7 +5369,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5314
5369
|
} | undefined;
|
|
5315
5370
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5316
5371
|
} & {
|
|
5317
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5372
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5318
5373
|
} & {
|
|
5319
5374
|
afterCreate(): void;
|
|
5320
5375
|
afterAttach(): void;
|
|
@@ -5337,10 +5392,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5337
5392
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5338
5393
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5339
5394
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5340
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5395
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5341
5396
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5342
5397
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5343
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5398
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5344
5399
|
}, {
|
|
5345
5400
|
width: number;
|
|
5346
5401
|
} & {
|
|
@@ -5356,11 +5411,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5356
5411
|
lastTrackDragY: undefined | number;
|
|
5357
5412
|
volatileError: unknown;
|
|
5358
5413
|
scaleFactor: number;
|
|
5414
|
+
targetBpPerPx: number | undefined;
|
|
5359
5415
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5360
5416
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5361
5417
|
coarseTotalBp: number;
|
|
5362
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5363
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5418
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5419
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5420
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
5421
|
+
scalebarRefNameClickPending: boolean;
|
|
5422
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5364
5423
|
} & {
|
|
5365
5424
|
readonly pinnedTracks: any[];
|
|
5366
5425
|
readonly unpinnedTracks: any[];
|
|
@@ -5414,16 +5473,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5414
5473
|
setShowCytobands(flag: boolean): void;
|
|
5415
5474
|
setWidth(newWidth: number): void;
|
|
5416
5475
|
setError(error: unknown): void;
|
|
5476
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
5477
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
5417
5478
|
setHideHeader(b: boolean): void;
|
|
5418
5479
|
setHideHeaderOverview(b: boolean): void;
|
|
5419
5480
|
setHideNoTracksActive(b: boolean): void;
|
|
5420
5481
|
setShowGridlines(b: boolean): void;
|
|
5421
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5422
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5423
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5482
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5483
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5484
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5485
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5424
5486
|
scrollTo(offsetPx: number): number;
|
|
5425
5487
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5426
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5488
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5427
5489
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5428
5490
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5429
5491
|
horizontallyFlip(): void;
|
|
@@ -5440,7 +5502,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5440
5502
|
setShowCenterLine(b: boolean): void;
|
|
5441
5503
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5442
5504
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5443
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5505
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5444
5506
|
assemblyName: string;
|
|
5445
5507
|
refName: string;
|
|
5446
5508
|
start: number;
|
|
@@ -5453,9 +5515,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5453
5515
|
setDraggingTrackId(idx?: string): void;
|
|
5454
5516
|
setLastTrackDragY(y: number): void;
|
|
5455
5517
|
setScaleFactor(factor: number): void;
|
|
5518
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
5456
5519
|
clearView(): void;
|
|
5457
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5458
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5520
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5521
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5459
5522
|
} & {
|
|
5460
5523
|
slide: (viewWidths: number) => void;
|
|
5461
5524
|
} & {
|
|
@@ -5474,10 +5537,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5474
5537
|
readonly visibleLocStrings: string;
|
|
5475
5538
|
readonly coarseVisibleLocStrings: string;
|
|
5476
5539
|
readonly coarseTotalBpDisplayStr: string;
|
|
5540
|
+
readonly effectiveBpPerPx: number;
|
|
5541
|
+
readonly effectiveTotalBp: number;
|
|
5542
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
5477
5543
|
} & {
|
|
5478
5544
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5479
5545
|
} & {
|
|
5480
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5546
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5481
5547
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5482
5548
|
navToSearchString({ input, assembly, }: {
|
|
5483
5549
|
input: string;
|
|
@@ -5485,8 +5551,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5485
5551
|
}): Promise<void>;
|
|
5486
5552
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5487
5553
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5488
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5489
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5554
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5555
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5490
5556
|
} & {
|
|
5491
5557
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5492
5558
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5522,7 +5588,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5522
5588
|
} | undefined;
|
|
5523
5589
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5524
5590
|
} & {
|
|
5525
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5591
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5526
5592
|
} & {
|
|
5527
5593
|
afterCreate(): void;
|
|
5528
5594
|
afterAttach(): void;
|
|
@@ -5545,10 +5611,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5545
5611
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5546
5612
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5547
5613
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5548
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5614
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5549
5615
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5550
5616
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5551
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5617
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5552
5618
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
5553
5619
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5554
5620
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -5568,10 +5634,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5568
5634
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5569
5635
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5570
5636
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5571
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5637
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5572
5638
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5573
5639
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5574
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5640
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5575
5641
|
}>>>)[];
|
|
5576
5642
|
renderProps(): {
|
|
5577
5643
|
theme: any;
|
|
@@ -5595,10 +5661,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5595
5661
|
showCytobandsSetting: boolean;
|
|
5596
5662
|
trackLabels: string;
|
|
5597
5663
|
showGridlines: boolean;
|
|
5598
|
-
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5664
|
+
highlight: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>>;
|
|
5599
5665
|
colorByCDS: boolean;
|
|
5600
5666
|
showTrackOutlines: boolean;
|
|
5601
|
-
init: (import("@jbrowse/plugin-linear-genome-view
|
|
5667
|
+
init: (import("@jbrowse/plugin-linear-genome-view").InitState & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>>) | undefined;
|
|
5602
5668
|
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
5603
5669
|
width: number;
|
|
5604
5670
|
} & {
|
|
@@ -5614,11 +5680,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5614
5680
|
lastTrackDragY: undefined | number;
|
|
5615
5681
|
volatileError: unknown;
|
|
5616
5682
|
scaleFactor: number;
|
|
5683
|
+
targetBpPerPx: number | undefined;
|
|
5617
5684
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5618
5685
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5619
5686
|
coarseTotalBp: number;
|
|
5620
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5621
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5687
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5688
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5689
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
5690
|
+
scalebarRefNameClickPending: boolean;
|
|
5691
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5622
5692
|
} & {
|
|
5623
5693
|
readonly pinnedTracks: any[];
|
|
5624
5694
|
readonly unpinnedTracks: any[];
|
|
@@ -5672,16 +5742,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5672
5742
|
setShowCytobands(flag: boolean): void;
|
|
5673
5743
|
setWidth(newWidth: number): void;
|
|
5674
5744
|
setError(error: unknown): void;
|
|
5745
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
5746
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
5675
5747
|
setHideHeader(b: boolean): void;
|
|
5676
5748
|
setHideHeaderOverview(b: boolean): void;
|
|
5677
5749
|
setHideNoTracksActive(b: boolean): void;
|
|
5678
5750
|
setShowGridlines(b: boolean): void;
|
|
5679
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5680
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5681
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5751
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5752
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5753
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5754
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5682
5755
|
scrollTo(offsetPx: number): number;
|
|
5683
5756
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5684
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5757
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5685
5758
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5686
5759
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5687
5760
|
horizontallyFlip(): void;
|
|
@@ -5698,7 +5771,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5698
5771
|
setShowCenterLine(b: boolean): void;
|
|
5699
5772
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5700
5773
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5701
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5774
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5702
5775
|
assemblyName: string;
|
|
5703
5776
|
refName: string;
|
|
5704
5777
|
start: number;
|
|
@@ -5711,9 +5784,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5711
5784
|
setDraggingTrackId(idx?: string): void;
|
|
5712
5785
|
setLastTrackDragY(y: number): void;
|
|
5713
5786
|
setScaleFactor(factor: number): void;
|
|
5787
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
5714
5788
|
clearView(): void;
|
|
5715
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5716
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
5789
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
5790
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5717
5791
|
} & {
|
|
5718
5792
|
slide: (viewWidths: number) => void;
|
|
5719
5793
|
} & {
|
|
@@ -5732,10 +5806,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5732
5806
|
readonly visibleLocStrings: string;
|
|
5733
5807
|
readonly coarseVisibleLocStrings: string;
|
|
5734
5808
|
readonly coarseTotalBpDisplayStr: string;
|
|
5809
|
+
readonly effectiveBpPerPx: number;
|
|
5810
|
+
readonly effectiveTotalBp: number;
|
|
5811
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
5735
5812
|
} & {
|
|
5736
5813
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5737
5814
|
} & {
|
|
5738
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
5815
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5739
5816
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5740
5817
|
navToSearchString({ input, assembly, }: {
|
|
5741
5818
|
input: string;
|
|
@@ -5743,8 +5820,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5743
5820
|
}): Promise<void>;
|
|
5744
5821
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5745
5822
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5746
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5747
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
5823
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
5824
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5748
5825
|
} & {
|
|
5749
5826
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5750
5827
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5780,7 +5857,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5780
5857
|
} | undefined;
|
|
5781
5858
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5782
5859
|
} & {
|
|
5783
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
5860
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5784
5861
|
} & {
|
|
5785
5862
|
afterCreate(): void;
|
|
5786
5863
|
afterAttach(): void;
|
|
@@ -5803,10 +5880,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5803
5880
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5804
5881
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5805
5882
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
5806
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5883
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
5807
5884
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5808
5885
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
5809
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
5886
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
5810
5887
|
}, {
|
|
5811
5888
|
width: number;
|
|
5812
5889
|
} & {
|
|
@@ -5822,11 +5899,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5822
5899
|
lastTrackDragY: undefined | number;
|
|
5823
5900
|
volatileError: unknown;
|
|
5824
5901
|
scaleFactor: number;
|
|
5902
|
+
targetBpPerPx: number | undefined;
|
|
5825
5903
|
trackRefs: Record<string, HTMLDivElement>;
|
|
5826
5904
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5827
5905
|
coarseTotalBp: number;
|
|
5828
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5829
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
5906
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5907
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
5908
|
+
isScalebarRefNameMenuOpen: boolean;
|
|
5909
|
+
scalebarRefNameClickPending: boolean;
|
|
5910
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
5830
5911
|
} & {
|
|
5831
5912
|
readonly pinnedTracks: any[];
|
|
5832
5913
|
readonly unpinnedTracks: any[];
|
|
@@ -5880,16 +5961,19 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5880
5961
|
setShowCytobands(flag: boolean): void;
|
|
5881
5962
|
setWidth(newWidth: number): void;
|
|
5882
5963
|
setError(error: unknown): void;
|
|
5964
|
+
setIsScalebarRefNameMenuOpen(isOpen: boolean): void;
|
|
5965
|
+
setScalebarRefNameClickPending(pending: boolean): void;
|
|
5883
5966
|
setHideHeader(b: boolean): void;
|
|
5884
5967
|
setHideHeaderOverview(b: boolean): void;
|
|
5885
5968
|
setHideNoTracksActive(b: boolean): void;
|
|
5886
5969
|
setShowGridlines(b: boolean): void;
|
|
5887
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5888
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
5889
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
5970
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5971
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
5972
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
5973
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
5890
5974
|
scrollTo(offsetPx: number): number;
|
|
5891
5975
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
5892
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
5976
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5893
5977
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
5894
5978
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
5895
5979
|
horizontallyFlip(): void;
|
|
@@ -5906,7 +5990,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5906
5990
|
setShowCenterLine(b: boolean): void;
|
|
5907
5991
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
5908
5992
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
5909
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
5993
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
5910
5994
|
assemblyName: string;
|
|
5911
5995
|
refName: string;
|
|
5912
5996
|
start: number;
|
|
@@ -5919,9 +6003,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5919
6003
|
setDraggingTrackId(idx?: string): void;
|
|
5920
6004
|
setLastTrackDragY(y: number): void;
|
|
5921
6005
|
setScaleFactor(factor: number): void;
|
|
6006
|
+
setTargetBpPerPx(target: number | undefined): void;
|
|
5922
6007
|
clearView(): void;
|
|
5923
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
5924
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
6008
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
6009
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
5925
6010
|
} & {
|
|
5926
6011
|
slide: (viewWidths: number) => void;
|
|
5927
6012
|
} & {
|
|
@@ -5940,10 +6025,13 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5940
6025
|
readonly visibleLocStrings: string;
|
|
5941
6026
|
readonly coarseVisibleLocStrings: string;
|
|
5942
6027
|
readonly coarseTotalBpDisplayStr: string;
|
|
6028
|
+
readonly effectiveBpPerPx: number;
|
|
6029
|
+
readonly effectiveTotalBp: number;
|
|
6030
|
+
readonly effectiveTotalBpDisplayStr: string;
|
|
5943
6031
|
} & {
|
|
5944
6032
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
5945
6033
|
} & {
|
|
5946
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
6034
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
5947
6035
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
5948
6036
|
navToSearchString({ input, assembly, }: {
|
|
5949
6037
|
input: string;
|
|
@@ -5951,8 +6039,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5951
6039
|
}): Promise<void>;
|
|
5952
6040
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
5953
6041
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
5954
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
5955
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
6042
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
6043
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
5956
6044
|
} & {
|
|
5957
6045
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
5958
6046
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -5988,7 +6076,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
5988
6076
|
} | undefined;
|
|
5989
6077
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
5990
6078
|
} & {
|
|
5991
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
6079
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
5992
6080
|
} & {
|
|
5993
6081
|
afterCreate(): void;
|
|
5994
6082
|
afterAttach(): void;
|
|
@@ -6011,10 +6099,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
6011
6099
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6012
6100
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6013
6101
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
6014
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6102
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
6015
6103
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6016
6104
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6017
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6105
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
6018
6106
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
6019
6107
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6020
6108
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -6034,10 +6122,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
6034
6122
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6035
6123
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6036
6124
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
6037
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6125
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
6038
6126
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6039
6127
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
6040
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
6128
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
6041
6129
|
}>>>;
|
|
6042
6130
|
removeView(): void;
|
|
6043
6131
|
} & {
|