@jbrowse/react-linear-genome-view2 3.2.0

package/dist/createModel/createModel.js

@@ -0,0 +1,118 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = createModel;
+const PluginManager_1 = __importDefault(require("@jbrowse/core/PluginManager"));
+const TextSearchManager_1 = __importDefault(require("@jbrowse/core/TextSearch/TextSearchManager"));
+const assemblyManager_1 = __importStar(require("@jbrowse/core/assemblyManager"));
+const RpcManager_1 = __importDefault(require("@jbrowse/core/rpc/RpcManager"));
+const mobx_state_tree_1 = require("mobx-state-tree");
+const corePlugins_1 = __importDefault(require("../corePlugins"));
+const createConfigModel_1 = __importDefault(require("./createConfigModel"));
+const createSessionModel_1 = __importDefault(require("./createSessionModel"));
+const version_1 = require("../version");
+function createModel(runtimePlugins, makeWorkerInstance = () => {
+    throw new Error('no makeWorkerInstance supplied');
+}) {
+    const pluginManager = new PluginManager_1.default([...corePlugins_1.default, ...runtimePlugins].map(P => new P())).createPluggableElements();
+    const Session = (0, createSessionModel_1.default)(pluginManager);
+    const assemblyConfig = (0, assemblyManager_1.assemblyConfigSchemaFactory)(pluginManager);
+    const AssemblyManager = (0, assemblyManager_1.default)(assemblyConfig, pluginManager);
+    const rootModel = mobx_state_tree_1.types
+        .model('ReactLinearGenomeView', {
+        config: (0, createConfigModel_1.default)(pluginManager, assemblyConfig),
+        session: Session,
+        assemblyManager: mobx_state_tree_1.types.optional(AssemblyManager, {}),
+        disableAddTracks: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, false),
+        internetAccounts: mobx_state_tree_1.types.array(pluginManager.pluggableMstType('internet account', 'stateModel')),
+    })
+        .volatile(self => ({
+        error: undefined,
+        rpcManager: new RpcManager_1.default(pluginManager, self.config.configuration.rpc, {
+            WebWorkerRpcDriver: {
+                makeWorkerInstance,
+            },
+            MainThreadRpcDriver: {},
+        }),
+        textSearchManager: new TextSearchManager_1.default(pluginManager),
+        adminMode: false,
+        version: version_1.version,
+    }))
+        .actions(self => ({
+        setSession(sessionSnapshot) {
+            self.session = (0, mobx_state_tree_1.cast)(sessionSnapshot);
+        },
+        renameCurrentSession(sessionName) {
+            this.setSession({
+                ...JSON.parse(JSON.stringify((0, mobx_state_tree_1.getSnapshot)(self.session))),
+                name: sessionName,
+            });
+        },
+        setError(error) {
+            self.error = error;
+        },
+        addInternetAccount(acct) {
+            self.internetAccounts.push(acct);
+        },
+        findAppropriateInternetAccount(location) {
+            const selectedId = location.internetAccountId;
+            if (selectedId) {
+                const selectedAccount = self.internetAccounts.find(a => a.internetAccountId === selectedId);
+                if (selectedAccount) {
+                    return selectedAccount;
+                }
+            }
+            for (const account of self.internetAccounts) {
+                const handleResult = account.handlesLocation(location);
+                if (handleResult) {
+                    return account;
+                }
+            }
+            return null;
+        },
+    }))
+        .views(self => ({
+        get jbrowse() {
+            return self.config;
+        },
+    }));
+    return {
+        model: rootModel,
+        pluginManager,
+    };
+}