@jbrowse/react-linear-genome-view2 3.2.0

package/esm/createViewState.js

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+import { assembleLocString, parseLocString } from '@jbrowse/core/util';
+import { onPatch } from 'mobx-state-tree';
+import createModel from './createModel';
+export default function createViewState(opts) {
+    const { assembly, tracks, internetAccounts, configuration, aggregateTextSearchAdapters, plugins, location, highlight, onChange, disableAddTracks = false, makeWorkerInstance, } = opts;
+    const { model, pluginManager } = createModel(plugins || [], makeWorkerInstance);
+    let { defaultSession } = opts;
+    if (!defaultSession) {
+        defaultSession = {
+            name: 'this session',
+            view: {
+                id: 'linearGenomeView',
+                type: 'LinearGenomeView',
+            },
+        };
+    }
+    const stateTree = model.create({
+        config: {
+            configuration,
+            assembly,
+            tracks,
+            internetAccounts,
+            aggregateTextSearchAdapters,
+        },
+        disableAddTracks,
+        session: defaultSession,
+    }, { pluginManager });
+    for (const account of stateTree.config.internetAccounts) {
+        const internetAccountType = pluginManager.getInternetAccountType(account.type);
+        if (!internetAccountType) {
+            throw new Error(`unknown internet account type ${account.type}`);
+        }
+        stateTree.addInternetAccount({
+            type: account.type,
+            configuration: account,
+        });
+    }
+    pluginManager.setRootModel(stateTree);
+    pluginManager.configure();
+    if (location) {
+        ;
+        (async () => {
+            const { session } = stateTree;
+            const { isValidRefName } = session.assemblyManager;
+            try {
+                await session.view.navToLocString(typeof location === 'string' ? location : assembleLocString(location), assembly.name);
+                if (highlight) {
+                    for (const h of highlight) {
+                        if (h) {
+                            const p = parseLocString(h, refName => isValidRefName(refName, assembly.name));
+                            const { start, end } = p;
+                            if (start !== undefined && end !== undefined) {
+                                session.view.addToHighlights({
+                                    ...p,
+                                    start,
+                                    end,
+                                    assemblyName: assembly,
+                                });
+                            }
+                        }
+                    }
+                }
+            }
+            catch (e) {
+                session.notifyError(`${e}`, e);
+            }
+        })();
+    }
+    if (onChange) {
+        onPatch(stateTree, onChange);
+    }
+    return stateTree;
+}

package/esm/index.d.ts

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+export { default as JBrowseLinearGenomeView } from './JBrowseLinearGenomeView';
+export { default as createModel } from './createModel';
+export { default as createViewState } from './createViewState';
+export { default as loadPlugins } from './loadPlugins';
+export type { ViewModel } from './createModel/createModel';

package/esm/index.js

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+export { default as JBrowseLinearGenomeView } from './JBrowseLinearGenomeView';
+export { default as createModel } from './createModel';
+export { default as createViewState } from './createViewState';
+export { default as loadPlugins } from './loadPlugins';

package/esm/loadPlugins.d.ts

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+import type { LoadedPlugin } from '@jbrowse/core/PluginLoader';
+interface PluginDefinition {
+    name: string;
+    url: string;
+}
+export default function loadPlugins(pluginDefinitions: PluginDefinition[], args?: {
+    fetchESM?: (url: string) => Promise<LoadedPlugin>;
+    baseUrl?: string;
+}): Promise<{
+    plugin: import("@jbrowse/core/Plugin").PluginConstructor;
+    definition: import("@jbrowse/core/PluginLoader").PluginDefinition;
+}[]>;
+export {};

package/esm/loadPlugins.js

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+import PluginLoader from '@jbrowse/core/PluginLoader';
+export default async function loadPlugins(pluginDefinitions, args) {
+    const pluginLoader = new PluginLoader(pluginDefinitions, args);
+    pluginLoader.installGlobalReExports(window);
+    return pluginLoader.load(args === null || args === void 0 ? void 0 : args.baseUrl);
+}

package/esm/makeWorkerInstance.d.ts

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+export default function makeWorkerInstance(): Worker;

package/esm/makeWorkerInstance.js

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+export default function makeWorkerInstance() {
+    return new Worker(new URL('./rpcWorker', import.meta.url));
+}

package/esm/rpcWorker.d.ts

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+import './workerPolyfill';
+export default function doNothing(): void;

package/esm/rpcWorker.js

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+import './workerPolyfill';
+import { initializeWorker } from '@jbrowse/product-core';
+import { enableStaticRendering } from 'mobx-react';
+import corePlugins from './corePlugins';
+enableStaticRendering(true);
+initializeWorker(corePlugins, {
+    fetchESM: url => import(url),
+});
+export default function doNothing() {
+}

package/esm/types.d.ts

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+import type { IAnyStateTreeNode } from 'mobx-state-tree';
+export interface ReferringNode {
+    node: IAnyStateTreeNode;
+    key: string;
+}

package/esm/types.js

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+export {};

package/esm/version.d.ts

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+export const version: "3.2.0";

package/esm/version.js

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+export const version = '3.2.0';

package/esm/webpack.d.ts

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+import * as React from 'react';
+export { default as JBrowseLinearGenomeView } from './JBrowseLinearGenomeView';
+export { default as createModel } from './createModel';
+export { default as createViewState } from './createViewState';
+export { default as loadPlugins } from './loadPlugins';
+export type { ViewModel } from './createModel/createModel';
+export * from 'react-dom/client';
+export { React };

package/esm/webpack.js

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+import * as React from 'react';
+export { default as JBrowseLinearGenomeView } from './JBrowseLinearGenomeView';
+export { default as createModel } from './createModel';
+export { default as createViewState } from './createViewState';
+export { default as loadPlugins } from './loadPlugins';
+export * from 'react-dom/client';
+export { React };

package/esm/workerPolyfill.js

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+"use strict";
+self.window = {
+    addEventListener() { },
+    fetch: self.fetch.bind(self),
+    location: self.location,
+    Date: self.Date,
+    requestIdleCallback: cb => {
+        cb();
+    },
+    cancelIdleCallback: () => { },
+    requestAnimationFrame: cb => {
+        cb();
+    },
+    cancelAnimationFrame: () => { },
+    navigator: {},
+};
+self.document = {
+    createTextNode() { },
+    querySelector() {
+        return { appendChild() { } };
+    },
+    documentElement: {},
+    querySelectorAll: () => [],
+    createElement() {
+        return {
+            style: {},
+            setAttribute() { },
+            removeAttribute() { },
+            appendChild() { },
+        };
+    },
+};

package/package.json

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+{
+  "name": "@jbrowse/react-linear-genome-view2",
+  "version": "3.2.0",
+  "description": "JBrowse 2 linear genome view React component",
+  "keywords": [
+    "jbrowse",
+    "jbrowse2"
+  ],
+  "license": "MIT",
+  "homepage": "https://jbrowse.org",
+  "bugs": "https://github.com/GMOD/jbrowse-components/issues",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/GMOD/jbrowse-components.git",
+    "directory": "products/jbrowse-react-linear-genome-view"
+  },
+  "author": "JBrowse Team",
+  "distMain": "dist/index.js",
+  "srcMain": "src/index.ts",
+  "distModule": "esm/index.js",
+  "srcModule": "src/index.ts",
+  "module": "esm/index.js",
+  "main": "dist/index.js",
+  "files": [
+    "dist",
+    "esm",
+    "docs"
+  ],
+  "scripts": {
+    "build": "npm-run-all build:*",
+    "prepublishOnly": "node output-version.js > src/version.js && git add -A src && git commit -m '[skip ci] Bump version.js'",
+    "build:esm": "tsc --build tsconfig.build.esm.json",
+    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
+    "build:webpack": "webpack",
+    "clean": "rimraf dist esm *.tsbuildinfo",
+    "storybook": "storybook dev --port 6006",
+    "storybook:build": "storybook build",
+    "prebuild": "yarn clean",
+    "prepack": "yarn build && yarn useDist",
+    "postpack": "yarn useSrc",
+    "useDist": "node ../../scripts/useDist.js",
+    "useSrc": "node ../../scripts/useSrc.js"
+  },
+  "dependencies": {
+    "@babel/runtime": "^7.17.9",
+    "@emotion/cache": "^11.7.1",
+    "@emotion/react": "^11.9.0",
+    "@emotion/styled": "^11.8.1",
+    "@jbrowse/core": "^3.2.0",
+    "@jbrowse/embedded-core": "^3.2.0",
+    "@jbrowse/plugin-alignments": "^3.2.0",
+    "@jbrowse/plugin-arc": "^3.2.0",
+    "@jbrowse/plugin-authentication": "^3.2.0",
+    "@jbrowse/plugin-bed": "^3.2.0",
+    "@jbrowse/plugin-circular-view": "^3.2.0",
+    "@jbrowse/plugin-config": "^3.2.0",
+    "@jbrowse/plugin-data-management": "^3.2.0",
+    "@jbrowse/plugin-gccontent": "^3.2.0",
+    "@jbrowse/plugin-gff3": "^3.2.0",
+    "@jbrowse/plugin-legacy-jbrowse": "^3.2.0",
+    "@jbrowse/plugin-linear-genome-view": "^3.2.0",
+    "@jbrowse/plugin-sequence": "^3.2.0",
+    "@jbrowse/plugin-svg": "^3.2.0",
+    "@jbrowse/plugin-trix": "^3.2.0",
+    "@jbrowse/plugin-variants": "^3.2.0",
+    "@jbrowse/plugin-wiggle": "^3.2.0",
+    "@jbrowse/product-core": "^3.2.0",
+    "@mui/icons-material": "^6.0.0",
+    "@mui/material": "^6.0.0",
+    "deepmerge": "^4.3.1",
+    "mobx": "^6.6.0",
+    "mobx-react": "^9.0.0",
+    "mobx-state-tree": "^5.0.0",
+    "rxjs": "^7.0.0",
+    "tss-react": "^4.4.1"
+  },
+  "peerDependencies": {
+    "react": ">=18.0.0"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
+}