@jbrowse/react-circular-genome-view2 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +1 -1
  2. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +1 -1
  3. package/esm/JBrowseCircularGenomeView/index.d.ts +1 -1
  4. package/esm/JBrowseCircularGenomeView/index.js +1 -1
  5. package/esm/corePlugins.d.ts +2 -2
  6. package/esm/createModel/createConfigModel.d.ts +25 -29
  7. package/esm/createModel/createConfigModel.js +1 -1
  8. package/esm/createModel/createModel.d.ts +517 -680
  9. package/esm/createModel/createModel.js +5 -5
  10. package/esm/createModel/createSessionModel.d.ts +247 -327
  11. package/esm/createModel/createSessionModel.js +5 -4
  12. package/esm/createModel/index.d.ts +3 -3
  13. package/esm/createModel/index.js +3 -3
  14. package/esm/createViewState.d.ts +1305 -1757
  15. package/esm/createViewState.js +3 -4
  16. package/esm/index.d.ts +4 -4
  17. package/esm/index.js +4 -4
  18. package/esm/loadPlugins.js +1 -1
  19. package/esm/types.d.ts +1 -1
  20. package/esm/version.d.ts +1 -1
  21. package/esm/version.js +1 -1
  22. package/esm/webpack.d.ts +4 -4
  23. package/esm/webpack.js +4 -4
  24. package/package.json +38 -40
  25. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +0 -5
  26. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +0 -23
  27. package/dist/JBrowseCircularGenomeView/index.d.ts +0 -1
  28. package/dist/JBrowseCircularGenomeView/index.js +0 -8
  29. package/dist/corePlugins.d.ts +0 -3
  30. package/dist/corePlugins.js +0 -22
  31. package/dist/createModel/AboutDialog.d.ts +0 -1
  32. package/dist/createModel/AboutDialog.js +0 -5
  33. package/dist/createModel/createConfigModel.d.ts +0 -104
  34. package/dist/createModel/createConfigModel.js +0 -43
  35. package/dist/createModel/createModel.d.ts +0 -4588
  36. package/dist/createModel/createModel.js +0 -117
  37. package/dist/createModel/createSessionModel.d.ts +0 -1870
  38. package/dist/createModel/createSessionModel.js +0 -115
  39. package/dist/createModel/index.d.ts +0 -3
  40. package/dist/createModel/index.js +0 -12
  41. package/dist/createViewState.d.ts +0 -11770
  42. package/dist/createViewState.js +0 -64
  43. package/dist/index.d.ts +0 -4
  44. package/dist/index.js +0 -14
  45. package/dist/loadPlugins.d.ts +0 -13
  46. package/dist/loadPlugins.js +0 -12
  47. package/dist/react-circular-genome-view.umd.production.min.js +0 -229
  48. package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +0 -145
  49. package/dist/react-circular-genome-view.umd.production.min.js.map +0 -1
  50. package/dist/types.d.ts +0 -5
  51. package/dist/types.js +0 -2
  52. package/dist/version.d.ts +0 -1
  53. package/dist/version.js +0 -4
  54. package/dist/webpack.d.ts +0 -7
  55. package/dist/webpack.js +0 -53
@@ -1,64 +0,0 @@
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- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- exports.default = createViewState;
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- const mobx_1 = require("mobx");
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- const mobx_state_tree_1 = require("mobx-state-tree");
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- const createModel_1 = __importDefault(require("./createModel"));
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- function createViewState(opts) {
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- const { assembly, tracks, internetAccounts, configuration, aggregateTextSearchAdapters, plugins, makeWorkerInstance, onChange, } = opts;
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- const { model, pluginManager } = (0, createModel_1.default)(plugins || [], makeWorkerInstance);
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- let { defaultSession } = opts;
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- if (!defaultSession) {
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- defaultSession = {
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- name: 'this session',
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- view: {
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- id: 'circularView',
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- type: 'CircularView',
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- },
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- };
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- }
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- const stateSnapshot = {
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- config: {
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- configuration,
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- assembly,
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- tracks,
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- internetAccounts,
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- aggregateTextSearchAdapters,
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- defaultSession,
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- },
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- session: defaultSession,
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- };
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- const stateTree = model.create(stateSnapshot, { pluginManager });
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- for (const account of stateTree.config.internetAccounts) {
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- const internetAccountType = pluginManager.getInternetAccountType(account.type);
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- if (!internetAccountType) {
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- throw new Error(`unknown internet account type ${account.type}`);
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- }
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- stateTree.addInternetAccount({
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- type: account.type,
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- configuration: account,
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- });
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- }
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- pluginManager.setRootModel(stateTree);
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- pluginManager.configure();
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- (0, mobx_1.autorun)(reaction => {
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- var _a;
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- const { session, assemblyManager } = stateTree;
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- if (!session.view.initialized) {
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- return;
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- }
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- const regions = (_a = assemblyManager.get(assembly === null || assembly === void 0 ? void 0 : assembly.name)) === null || _a === void 0 ? void 0 : _a.regions;
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- if (!regions) {
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- return;
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- }
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- session.view.setDisplayedRegions(regions);
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- reaction.dispose();
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- });
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- if (onChange) {
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- (0, mobx_state_tree_1.onPatch)(stateTree, onChange);
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- }
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- return stateTree;
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- }
package/dist/index.d.ts DELETED
@@ -1,4 +0,0 @@
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- export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
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- export { default as createModel } from './createModel';
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- export { default as createViewState } from './createViewState';
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- export { default as loadPlugins } from './loadPlugins';
package/dist/index.js DELETED
@@ -1,14 +0,0 @@
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- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- exports.loadPlugins = exports.createViewState = exports.createModel = exports.JBrowseCircularGenomeView = void 0;
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- var JBrowseCircularGenomeView_1 = require("./JBrowseCircularGenomeView");
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- Object.defineProperty(exports, "JBrowseCircularGenomeView", { enumerable: true, get: function () { return __importDefault(JBrowseCircularGenomeView_1).default; } });
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- var createModel_1 = require("./createModel");
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- Object.defineProperty(exports, "createModel", { enumerable: true, get: function () { return __importDefault(createModel_1).default; } });
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- var createViewState_1 = require("./createViewState");
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- Object.defineProperty(exports, "createViewState", { enumerable: true, get: function () { return __importDefault(createViewState_1).default; } });
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- var loadPlugins_1 = require("./loadPlugins");
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- Object.defineProperty(exports, "loadPlugins", { enumerable: true, get: function () { return __importDefault(loadPlugins_1).default; } });
@@ -1,13 +0,0 @@
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- import type { LoadedPlugin } from '@jbrowse/core/PluginLoader';
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- interface PluginDefinition {
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- name: string;
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- url: string;
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- }
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- export default function loadPlugins(pluginDefinitions: PluginDefinition[], args?: {
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- fetchESM?: (url: string) => Promise<LoadedPlugin>;
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- baseUrl?: string;
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- }): Promise<{
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- plugin: import("@jbrowse/core/Plugin").PluginConstructor;
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- definition: import("@jbrowse/core/PluginLoader").PluginDefinition;
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- }[]>;
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- export {};
@@ -1,12 +0,0 @@
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- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- exports.default = loadPlugins;
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- const PluginLoader_1 = __importDefault(require("@jbrowse/core/PluginLoader"));
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- async function loadPlugins(pluginDefinitions, args) {
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- const pluginLoader = new PluginLoader_1.default(pluginDefinitions, args);
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- pluginLoader.installGlobalReExports(window);
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- return pluginLoader.load(args === null || args === void 0 ? void 0 : args.baseUrl);
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- }