@jbrowse/react-circular-genome-view2 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +1 -1
  2. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +1 -1
  3. package/esm/JBrowseCircularGenomeView/index.d.ts +1 -1
  4. package/esm/JBrowseCircularGenomeView/index.js +1 -1
  5. package/esm/corePlugins.d.ts +2 -2
  6. package/esm/createModel/createConfigModel.d.ts +25 -29
  7. package/esm/createModel/createConfigModel.js +1 -1
  8. package/esm/createModel/createModel.d.ts +517 -680
  9. package/esm/createModel/createModel.js +5 -5
  10. package/esm/createModel/createSessionModel.d.ts +247 -327
  11. package/esm/createModel/createSessionModel.js +5 -4
  12. package/esm/createModel/index.d.ts +3 -3
  13. package/esm/createModel/index.js +3 -3
  14. package/esm/createViewState.d.ts +1305 -1757
  15. package/esm/createViewState.js +3 -4
  16. package/esm/index.d.ts +4 -4
  17. package/esm/index.js +4 -4
  18. package/esm/loadPlugins.js +1 -1
  19. package/esm/types.d.ts +1 -1
  20. package/esm/version.d.ts +1 -1
  21. package/esm/version.js +1 -1
  22. package/esm/webpack.d.ts +4 -4
  23. package/esm/webpack.js +4 -4
  24. package/package.json +38 -40
  25. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +0 -5
  26. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +0 -23
  27. package/dist/JBrowseCircularGenomeView/index.d.ts +0 -1
  28. package/dist/JBrowseCircularGenomeView/index.js +0 -8
  29. package/dist/corePlugins.d.ts +0 -3
  30. package/dist/corePlugins.js +0 -22
  31. package/dist/createModel/AboutDialog.d.ts +0 -1
  32. package/dist/createModel/AboutDialog.js +0 -5
  33. package/dist/createModel/createConfigModel.d.ts +0 -104
  34. package/dist/createModel/createConfigModel.js +0 -43
  35. package/dist/createModel/createModel.d.ts +0 -4588
  36. package/dist/createModel/createModel.js +0 -117
  37. package/dist/createModel/createSessionModel.d.ts +0 -1870
  38. package/dist/createModel/createSessionModel.js +0 -115
  39. package/dist/createModel/index.d.ts +0 -3
  40. package/dist/createModel/index.js +0 -12
  41. package/dist/createViewState.d.ts +0 -11770
  42. package/dist/createViewState.js +0 -64
  43. package/dist/index.d.ts +0 -4
  44. package/dist/index.js +0 -14
  45. package/dist/loadPlugins.d.ts +0 -13
  46. package/dist/loadPlugins.js +0 -12
  47. package/dist/react-circular-genome-view.umd.production.min.js +0 -229
  48. package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +0 -145
  49. package/dist/react-circular-genome-view.umd.production.min.js.map +0 -1
  50. package/dist/types.d.ts +0 -5
  51. package/dist/types.js +0 -2
  52. package/dist/version.d.ts +0 -1
  53. package/dist/version.js +0 -4
  54. package/dist/webpack.d.ts +0 -7
  55. package/dist/webpack.js +0 -53
@@ -1,1870 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- import type { Instance } from 'mobx-state-tree';
3
- export default function sessionModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- name: import("mobx-state-tree").ISimpleType<string>;
6
- margin: import("mobx-state-tree").IType<number | undefined, number, number>;
7
- } & {
8
- drawerPosition: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
- drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
10
- widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
11
- activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
12
- minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
13
- } & {
14
- connectionInstances: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
15
- name: import("mobx-state-tree").ISimpleType<string>;
16
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
17
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
18
- name: {
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- type: string;
20
- defaultValue: string;
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- description: string;
22
- };
23
- assemblyNames: {
24
- type: string;
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- defaultValue: never[];
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- description: string;
27
- };
28
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
29
- }, {
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- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
31
- } & {
32
- afterAttach(): void;
33
- addTrackConf(trackConf: Record<string, unknown> | ({
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- [x: string]: any;
35
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
36
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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- [x: string]: any;
38
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
39
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
40
- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
42
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
43
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
44
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
45
- [x: string]: any;
46
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
47
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
48
- [x: string]: any;
49
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
50
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
51
- [x: string]: any;
52
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
53
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
54
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
55
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
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- clear(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
58
- } & {
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- view: import("mobx-state-tree").IAnyModelType;
60
- }, {
61
- selection: unknown;
62
- hovered: unknown;
63
- } & {
64
- readonly root: {
65
- jbrowse: any;
66
- session: any;
67
- sessionPath: string;
68
- assemblyManager: {
69
- assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
70
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
71
- }, {
72
- error: unknown;
73
- loadingP: Promise<void> | undefined;
74
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
75
- refNameAliases: {
76
- [x: string]: string;
77
- } | undefined;
78
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
79
- } & {
80
- getConf(arg: string): any;
81
- readonly lowerCaseRefNameAliases: {
82
- [k: string]: string;
83
- } | undefined;
84
- } & {
85
- readonly initialized: boolean;
86
- readonly name: string;
87
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
88
- readonly aliases: string[];
89
- readonly displayName: string;
90
- hasName(name: string): boolean;
91
- readonly allAliases: string[];
92
- readonly allRefNames: string[] | undefined;
93
- readonly lowerCaseRefNames: string[] | undefined;
94
- readonly allRefNamesWithLowerCase: string[] | undefined;
95
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
96
- readonly refNameColors: string[];
97
- } & {
98
- readonly refNames: string[] | undefined;
99
- } & {
100
- getCanonicalRefName(refName: string): string | undefined;
101
- getCanonicalRefName2(asmName: string): string;
102
- getRefNameColor(refName: string): string | undefined;
103
- isValidRefName(refName: string): boolean;
104
- } & {
105
- setLoaded({ regions, refNameAliases, cytobands, }: {
106
- regions: import("@jbrowse/core/util/types").Region[];
107
- refNameAliases: {
108
- [x: string]: string;
109
- };
110
- cytobands: import("@jbrowse/core/util").Feature[];
111
- }): void;
112
- setError(e: unknown): void;
113
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
114
- setRefNameAliases(aliases: {
115
- [x: string]: string;
116
- }): void;
117
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
118
- setLoadingP(p?: Promise<void>): void;
119
- load(): Promise<void>;
120
- loadPre(): Promise<void>;
121
- } & {
122
- getAdapterMapEntry(adapterConf: {
123
- [x: string]: unknown;
124
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
125
- getRefNameMapForAdapter(adapterConf: {
126
- [x: string]: unknown;
127
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
128
- [x: string]: string;
129
- }>;
130
- getReverseRefNameMapForAdapter(adapterConf: {
131
- [x: string]: unknown;
132
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
133
- [x: string]: string;
134
- }>;
135
- afterCreate(): void;
136
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
137
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
138
- }, {
139
- error: unknown;
140
- loadingP: Promise<void> | undefined;
141
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
142
- refNameAliases: {
143
- [x: string]: string;
144
- } | undefined;
145
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
146
- } & {
147
- getConf(arg: string): any;
148
- readonly lowerCaseRefNameAliases: {
149
- [k: string]: string;
150
- } | undefined;
151
- } & {
152
- readonly initialized: boolean;
153
- readonly name: string;
154
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
155
- readonly aliases: string[];
156
- readonly displayName: string;
157
- hasName(name: string): boolean;
158
- readonly allAliases: string[];
159
- readonly allRefNames: string[] | undefined;
160
- readonly lowerCaseRefNames: string[] | undefined;
161
- readonly allRefNamesWithLowerCase: string[] | undefined;
162
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
163
- readonly refNameColors: string[];
164
- } & {
165
- readonly refNames: string[] | undefined;
166
- } & {
167
- getCanonicalRefName(refName: string): string | undefined;
168
- getCanonicalRefName2(asmName: string): string;
169
- getRefNameColor(refName: string): string | undefined;
170
- isValidRefName(refName: string): boolean;
171
- } & {
172
- setLoaded({ regions, refNameAliases, cytobands, }: {
173
- regions: import("@jbrowse/core/util/types").Region[];
174
- refNameAliases: {
175
- [x: string]: string;
176
- };
177
- cytobands: import("@jbrowse/core/util").Feature[];
178
- }): void;
179
- setError(e: unknown): void;
180
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
181
- setRefNameAliases(aliases: {
182
- [x: string]: string;
183
- }): void;
184
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
185
- setLoadingP(p?: Promise<void>): void;
186
- load(): Promise<void>;
187
- loadPre(): Promise<void>;
188
- } & {
189
- getAdapterMapEntry(adapterConf: {
190
- [x: string]: unknown;
191
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
192
- getRefNameMapForAdapter(adapterConf: {
193
- [x: string]: unknown;
194
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
195
- [x: string]: string;
196
- }>;
197
- getReverseRefNameMapForAdapter(adapterConf: {
198
- [x: string]: unknown;
199
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
200
- [x: string]: string;
201
- }>;
202
- afterCreate(): void;
203
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
204
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
205
- readonly assemblyNameMap: Record<string, {
206
- configuration: any;
207
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
208
- error: unknown;
209
- loadingP: Promise<void> | undefined;
210
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
211
- refNameAliases: {
212
- [x: string]: string;
213
- } | undefined;
214
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
215
- } & {
216
- getConf(arg: string): any;
217
- readonly lowerCaseRefNameAliases: {
218
- [k: string]: string;
219
- } | undefined;
220
- } & {
221
- readonly initialized: boolean;
222
- readonly name: string;
223
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
224
- readonly aliases: string[];
225
- readonly displayName: string;
226
- hasName(name: string): boolean;
227
- readonly allAliases: string[];
228
- readonly allRefNames: string[] | undefined;
229
- readonly lowerCaseRefNames: string[] | undefined;
230
- readonly allRefNamesWithLowerCase: string[] | undefined;
231
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
232
- readonly refNameColors: string[];
233
- } & {
234
- readonly refNames: string[] | undefined;
235
- } & {
236
- getCanonicalRefName(refName: string): string | undefined;
237
- getCanonicalRefName2(asmName: string): string;
238
- getRefNameColor(refName: string): string | undefined;
239
- isValidRefName(refName: string): boolean;
240
- } & {
241
- setLoaded({ regions, refNameAliases, cytobands, }: {
242
- regions: import("@jbrowse/core/util/types").Region[];
243
- refNameAliases: {
244
- [x: string]: string;
245
- };
246
- cytobands: import("@jbrowse/core/util").Feature[];
247
- }): void;
248
- setError(e: unknown): void;
249
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
250
- setRefNameAliases(aliases: {
251
- [x: string]: string;
252
- }): void;
253
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
254
- setLoadingP(p?: Promise<void>): void;
255
- load(): Promise<void>;
256
- loadPre(): Promise<void>;
257
- } & {
258
- getAdapterMapEntry(adapterConf: {
259
- [x: string]: unknown;
260
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
261
- getRefNameMapForAdapter(adapterConf: {
262
- [x: string]: unknown;
263
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
264
- [x: string]: string;
265
- }>;
266
- getReverseRefNameMapForAdapter(adapterConf: {
267
- [x: string]: unknown;
268
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
269
- [x: string]: string;
270
- }>;
271
- afterCreate(): void;
272
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
273
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
274
- }, {
275
- error: unknown;
276
- loadingP: Promise<void> | undefined;
277
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
278
- refNameAliases: {
279
- [x: string]: string;
280
- } | undefined;
281
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
282
- } & {
283
- getConf(arg: string): any;
284
- readonly lowerCaseRefNameAliases: {
285
- [k: string]: string;
286
- } | undefined;
287
- } & {
288
- readonly initialized: boolean;
289
- readonly name: string;
290
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
291
- readonly aliases: string[];
292
- readonly displayName: string;
293
- hasName(name: string): boolean;
294
- readonly allAliases: string[];
295
- readonly allRefNames: string[] | undefined;
296
- readonly lowerCaseRefNames: string[] | undefined;
297
- readonly allRefNamesWithLowerCase: string[] | undefined;
298
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
299
- readonly refNameColors: string[];
300
- } & {
301
- readonly refNames: string[] | undefined;
302
- } & {
303
- getCanonicalRefName(refName: string): string | undefined;
304
- getCanonicalRefName2(asmName: string): string;
305
- getRefNameColor(refName: string): string | undefined;
306
- isValidRefName(refName: string): boolean;
307
- } & {
308
- setLoaded({ regions, refNameAliases, cytobands, }: {
309
- regions: import("@jbrowse/core/util/types").Region[];
310
- refNameAliases: {
311
- [x: string]: string;
312
- };
313
- cytobands: import("@jbrowse/core/util").Feature[];
314
- }): void;
315
- setError(e: unknown): void;
316
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
317
- setRefNameAliases(aliases: {
318
- [x: string]: string;
319
- }): void;
320
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
321
- setLoadingP(p?: Promise<void>): void;
322
- load(): Promise<void>;
323
- loadPre(): Promise<void>;
324
- } & {
325
- getAdapterMapEntry(adapterConf: {
326
- [x: string]: unknown;
327
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
328
- getRefNameMapForAdapter(adapterConf: {
329
- [x: string]: unknown;
330
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
331
- [x: string]: string;
332
- }>;
333
- getReverseRefNameMapForAdapter(adapterConf: {
334
- [x: string]: unknown;
335
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
336
- [x: string]: string;
337
- }>;
338
- afterCreate(): void;
339
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
340
- } & {
341
- getCanonicalAssemblyName(asmName: string): string | undefined;
342
- getCanonicalAssemblyName2(asmName: string): string;
343
- get(asmName: string): ({
344
- configuration: any;
345
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
346
- error: unknown;
347
- loadingP: Promise<void> | undefined;
348
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
349
- refNameAliases: {
350
- [x: string]: string;
351
- } | undefined;
352
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
353
- } & {
354
- getConf(arg: string): any;
355
- readonly lowerCaseRefNameAliases: {
356
- [k: string]: string;
357
- } | undefined;
358
- } & {
359
- readonly initialized: boolean;
360
- readonly name: string;
361
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
362
- readonly aliases: string[];
363
- readonly displayName: string;
364
- hasName(name: string): boolean;
365
- readonly allAliases: string[];
366
- readonly allRefNames: string[] | undefined;
367
- readonly lowerCaseRefNames: string[] | undefined;
368
- readonly allRefNamesWithLowerCase: string[] | undefined;
369
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
370
- readonly refNameColors: string[];
371
- } & {
372
- readonly refNames: string[] | undefined;
373
- } & {
374
- getCanonicalRefName(refName: string): string | undefined;
375
- getCanonicalRefName2(asmName: string): string;
376
- getRefNameColor(refName: string): string | undefined;
377
- isValidRefName(refName: string): boolean;
378
- } & {
379
- setLoaded({ regions, refNameAliases, cytobands, }: {
380
- regions: import("@jbrowse/core/util/types").Region[];
381
- refNameAliases: {
382
- [x: string]: string;
383
- };
384
- cytobands: import("@jbrowse/core/util").Feature[];
385
- }): void;
386
- setError(e: unknown): void;
387
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
388
- setRefNameAliases(aliases: {
389
- [x: string]: string;
390
- }): void;
391
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
392
- setLoadingP(p?: Promise<void>): void;
393
- load(): Promise<void>;
394
- loadPre(): Promise<void>;
395
- } & {
396
- getAdapterMapEntry(adapterConf: {
397
- [x: string]: unknown;
398
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
399
- getRefNameMapForAdapter(adapterConf: {
400
- [x: string]: unknown;
401
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
402
- [x: string]: string;
403
- }>;
404
- getReverseRefNameMapForAdapter(adapterConf: {
405
- [x: string]: unknown;
406
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
407
- [x: string]: string;
408
- }>;
409
- afterCreate(): void;
410
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
411
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
412
- }, {
413
- error: unknown;
414
- loadingP: Promise<void> | undefined;
415
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
416
- refNameAliases: {
417
- [x: string]: string;
418
- } | undefined;
419
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
420
- } & {
421
- getConf(arg: string): any;
422
- readonly lowerCaseRefNameAliases: {
423
- [k: string]: string;
424
- } | undefined;
425
- } & {
426
- readonly initialized: boolean;
427
- readonly name: string;
428
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
429
- readonly aliases: string[];
430
- readonly displayName: string;
431
- hasName(name: string): boolean;
432
- readonly allAliases: string[];
433
- readonly allRefNames: string[] | undefined;
434
- readonly lowerCaseRefNames: string[] | undefined;
435
- readonly allRefNamesWithLowerCase: string[] | undefined;
436
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
437
- readonly refNameColors: string[];
438
- } & {
439
- readonly refNames: string[] | undefined;
440
- } & {
441
- getCanonicalRefName(refName: string): string | undefined;
442
- getCanonicalRefName2(asmName: string): string;
443
- getRefNameColor(refName: string): string | undefined;
444
- isValidRefName(refName: string): boolean;
445
- } & {
446
- setLoaded({ regions, refNameAliases, cytobands, }: {
447
- regions: import("@jbrowse/core/util/types").Region[];
448
- refNameAliases: {
449
- [x: string]: string;
450
- };
451
- cytobands: import("@jbrowse/core/util").Feature[];
452
- }): void;
453
- setError(e: unknown): void;
454
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
455
- setRefNameAliases(aliases: {
456
- [x: string]: string;
457
- }): void;
458
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
459
- setLoadingP(p?: Promise<void>): void;
460
- load(): Promise<void>;
461
- loadPre(): Promise<void>;
462
- } & {
463
- getAdapterMapEntry(adapterConf: {
464
- [x: string]: unknown;
465
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
466
- getRefNameMapForAdapter(adapterConf: {
467
- [x: string]: unknown;
468
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
469
- [x: string]: string;
470
- }>;
471
- getReverseRefNameMapForAdapter(adapterConf: {
472
- [x: string]: unknown;
473
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
474
- [x: string]: string;
475
- }>;
476
- afterCreate(): void;
477
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
478
- readonly assemblyNamesList: any[];
479
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
480
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
481
- } & {
482
- waitForAssembly(assemblyName: string): Promise<({
483
- configuration: any;
484
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
485
- error: unknown;
486
- loadingP: Promise<void> | undefined;
487
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
488
- refNameAliases: {
489
- [x: string]: string;
490
- } | undefined;
491
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
492
- } & {
493
- getConf(arg: string): any;
494
- readonly lowerCaseRefNameAliases: {
495
- [k: string]: string;
496
- } | undefined;
497
- } & {
498
- readonly initialized: boolean;
499
- readonly name: string;
500
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
501
- readonly aliases: string[];
502
- readonly displayName: string;
503
- hasName(name: string): boolean;
504
- readonly allAliases: string[];
505
- readonly allRefNames: string[] | undefined;
506
- readonly lowerCaseRefNames: string[] | undefined;
507
- readonly allRefNamesWithLowerCase: string[] | undefined;
508
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
509
- readonly refNameColors: string[];
510
- } & {
511
- readonly refNames: string[] | undefined;
512
- } & {
513
- getCanonicalRefName(refName: string): string | undefined;
514
- getCanonicalRefName2(asmName: string): string;
515
- getRefNameColor(refName: string): string | undefined;
516
- isValidRefName(refName: string): boolean;
517
- } & {
518
- setLoaded({ regions, refNameAliases, cytobands, }: {
519
- regions: import("@jbrowse/core/util/types").Region[];
520
- refNameAliases: {
521
- [x: string]: string;
522
- };
523
- cytobands: import("@jbrowse/core/util").Feature[];
524
- }): void;
525
- setError(e: unknown): void;
526
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
527
- setRefNameAliases(aliases: {
528
- [x: string]: string;
529
- }): void;
530
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
531
- setLoadingP(p?: Promise<void>): void;
532
- load(): Promise<void>;
533
- loadPre(): Promise<void>;
534
- } & {
535
- getAdapterMapEntry(adapterConf: {
536
- [x: string]: unknown;
537
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
538
- getRefNameMapForAdapter(adapterConf: {
539
- [x: string]: unknown;
540
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
541
- [x: string]: string;
542
- }>;
543
- getReverseRefNameMapForAdapter(adapterConf: {
544
- [x: string]: unknown;
545
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
546
- [x: string]: string;
547
- }>;
548
- afterCreate(): void;
549
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
550
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
551
- }, {
552
- error: unknown;
553
- loadingP: Promise<void> | undefined;
554
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
555
- refNameAliases: {
556
- [x: string]: string;
557
- } | undefined;
558
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
559
- } & {
560
- getConf(arg: string): any;
561
- readonly lowerCaseRefNameAliases: {
562
- [k: string]: string;
563
- } | undefined;
564
- } & {
565
- readonly initialized: boolean;
566
- readonly name: string;
567
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
568
- readonly aliases: string[];
569
- readonly displayName: string;
570
- hasName(name: string): boolean;
571
- readonly allAliases: string[];
572
- readonly allRefNames: string[] | undefined;
573
- readonly lowerCaseRefNames: string[] | undefined;
574
- readonly allRefNamesWithLowerCase: string[] | undefined;
575
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
576
- readonly refNameColors: string[];
577
- } & {
578
- readonly refNames: string[] | undefined;
579
- } & {
580
- getCanonicalRefName(refName: string): string | undefined;
581
- getCanonicalRefName2(asmName: string): string;
582
- getRefNameColor(refName: string): string | undefined;
583
- isValidRefName(refName: string): boolean;
584
- } & {
585
- setLoaded({ regions, refNameAliases, cytobands, }: {
586
- regions: import("@jbrowse/core/util/types").Region[];
587
- refNameAliases: {
588
- [x: string]: string;
589
- };
590
- cytobands: import("@jbrowse/core/util").Feature[];
591
- }): void;
592
- setError(e: unknown): void;
593
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
594
- setRefNameAliases(aliases: {
595
- [x: string]: string;
596
- }): void;
597
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
598
- setLoadingP(p?: Promise<void>): void;
599
- load(): Promise<void>;
600
- loadPre(): Promise<void>;
601
- } & {
602
- getAdapterMapEntry(adapterConf: {
603
- [x: string]: unknown;
604
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
605
- getRefNameMapForAdapter(adapterConf: {
606
- [x: string]: unknown;
607
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
608
- [x: string]: string;
609
- }>;
610
- getReverseRefNameMapForAdapter(adapterConf: {
611
- [x: string]: unknown;
612
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
613
- [x: string]: string;
614
- }>;
615
- afterCreate(): void;
616
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
617
- getRefNameMapForAdapter(adapterConf: {
618
- [x: string]: unknown;
619
- }, assemblyName: string | undefined, opts: {
620
- stopToken?: string;
621
- sessionId: string;
622
- }): Promise<{
623
- [x: string]: string;
624
- } | undefined>;
625
- getReverseRefNameMapForAdapter(adapterConf: {
626
- [x: string]: unknown;
627
- }, assemblyName: string | undefined, opts: {
628
- stopToken?: string;
629
- sessionId: string;
630
- }): Promise<{
631
- [x: string]: string;
632
- } | undefined>;
633
- isValidRefName(refName: string, assemblyName: string): boolean;
634
- } & {
635
- afterAttach(): void;
636
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
637
- addAssembly(configuration: any): void;
638
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
639
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
640
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
641
- }, {
642
- error: unknown;
643
- loadingP: Promise<void> | undefined;
644
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
645
- refNameAliases: {
646
- [x: string]: string;
647
- } | undefined;
648
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
649
- } & {
650
- getConf(arg: string): any;
651
- readonly lowerCaseRefNameAliases: {
652
- [k: string]: string;
653
- } | undefined;
654
- } & {
655
- readonly initialized: boolean;
656
- readonly name: string;
657
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
658
- readonly aliases: string[];
659
- readonly displayName: string;
660
- hasName(name: string): boolean;
661
- readonly allAliases: string[];
662
- readonly allRefNames: string[] | undefined;
663
- readonly lowerCaseRefNames: string[] | undefined;
664
- readonly allRefNamesWithLowerCase: string[] | undefined;
665
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
666
- readonly refNameColors: string[];
667
- } & {
668
- readonly refNames: string[] | undefined;
669
- } & {
670
- getCanonicalRefName(refName: string): string | undefined;
671
- getCanonicalRefName2(asmName: string): string;
672
- getRefNameColor(refName: string): string | undefined;
673
- isValidRefName(refName: string): boolean;
674
- } & {
675
- setLoaded({ regions, refNameAliases, cytobands, }: {
676
- regions: import("@jbrowse/core/util/types").Region[];
677
- refNameAliases: {
678
- [x: string]: string;
679
- };
680
- cytobands: import("@jbrowse/core/util").Feature[];
681
- }): void;
682
- setError(e: unknown): void;
683
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
684
- setRefNameAliases(aliases: {
685
- [x: string]: string;
686
- }): void;
687
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
688
- setLoadingP(p?: Promise<void>): void;
689
- load(): Promise<void>;
690
- loadPre(): Promise<void>;
691
- } & {
692
- getAdapterMapEntry(adapterConf: {
693
- [x: string]: unknown;
694
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
695
- getRefNameMapForAdapter(adapterConf: {
696
- [x: string]: unknown;
697
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
698
- [x: string]: string;
699
- }>;
700
- getReverseRefNameMapForAdapter(adapterConf: {
701
- [x: string]: unknown;
702
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
703
- [x: string]: string;
704
- }>;
705
- afterCreate(): void;
706
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
707
- }, {
708
- readonly assemblyNameMap: Record<string, {
709
- configuration: any;
710
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
711
- error: unknown;
712
- loadingP: Promise<void> | undefined;
713
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
714
- refNameAliases: {
715
- [x: string]: string;
716
- } | undefined;
717
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
718
- } & {
719
- getConf(arg: string): any;
720
- readonly lowerCaseRefNameAliases: {
721
- [k: string]: string;
722
- } | undefined;
723
- } & {
724
- readonly initialized: boolean;
725
- readonly name: string;
726
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
727
- readonly aliases: string[];
728
- readonly displayName: string;
729
- hasName(name: string): boolean;
730
- readonly allAliases: string[];
731
- readonly allRefNames: string[] | undefined;
732
- readonly lowerCaseRefNames: string[] | undefined;
733
- readonly allRefNamesWithLowerCase: string[] | undefined;
734
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
735
- readonly refNameColors: string[];
736
- } & {
737
- readonly refNames: string[] | undefined;
738
- } & {
739
- getCanonicalRefName(refName: string): string | undefined;
740
- getCanonicalRefName2(asmName: string): string;
741
- getRefNameColor(refName: string): string | undefined;
742
- isValidRefName(refName: string): boolean;
743
- } & {
744
- setLoaded({ regions, refNameAliases, cytobands, }: {
745
- regions: import("@jbrowse/core/util/types").Region[];
746
- refNameAliases: {
747
- [x: string]: string;
748
- };
749
- cytobands: import("@jbrowse/core/util").Feature[];
750
- }): void;
751
- setError(e: unknown): void;
752
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
753
- setRefNameAliases(aliases: {
754
- [x: string]: string;
755
- }): void;
756
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
757
- setLoadingP(p?: Promise<void>): void;
758
- load(): Promise<void>;
759
- loadPre(): Promise<void>;
760
- } & {
761
- getAdapterMapEntry(adapterConf: {
762
- [x: string]: unknown;
763
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
764
- getRefNameMapForAdapter(adapterConf: {
765
- [x: string]: unknown;
766
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
767
- [x: string]: string;
768
- }>;
769
- getReverseRefNameMapForAdapter(adapterConf: {
770
- [x: string]: unknown;
771
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
772
- [x: string]: string;
773
- }>;
774
- afterCreate(): void;
775
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
776
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
777
- }, {
778
- error: unknown;
779
- loadingP: Promise<void> | undefined;
780
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
781
- refNameAliases: {
782
- [x: string]: string;
783
- } | undefined;
784
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
785
- } & {
786
- getConf(arg: string): any;
787
- readonly lowerCaseRefNameAliases: {
788
- [k: string]: string;
789
- } | undefined;
790
- } & {
791
- readonly initialized: boolean;
792
- readonly name: string;
793
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
794
- readonly aliases: string[];
795
- readonly displayName: string;
796
- hasName(name: string): boolean;
797
- readonly allAliases: string[];
798
- readonly allRefNames: string[] | undefined;
799
- readonly lowerCaseRefNames: string[] | undefined;
800
- readonly allRefNamesWithLowerCase: string[] | undefined;
801
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
802
- readonly refNameColors: string[];
803
- } & {
804
- readonly refNames: string[] | undefined;
805
- } & {
806
- getCanonicalRefName(refName: string): string | undefined;
807
- getCanonicalRefName2(asmName: string): string;
808
- getRefNameColor(refName: string): string | undefined;
809
- isValidRefName(refName: string): boolean;
810
- } & {
811
- setLoaded({ regions, refNameAliases, cytobands, }: {
812
- regions: import("@jbrowse/core/util/types").Region[];
813
- refNameAliases: {
814
- [x: string]: string;
815
- };
816
- cytobands: import("@jbrowse/core/util").Feature[];
817
- }): void;
818
- setError(e: unknown): void;
819
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
820
- setRefNameAliases(aliases: {
821
- [x: string]: string;
822
- }): void;
823
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
824
- setLoadingP(p?: Promise<void>): void;
825
- load(): Promise<void>;
826
- loadPre(): Promise<void>;
827
- } & {
828
- getAdapterMapEntry(adapterConf: {
829
- [x: string]: unknown;
830
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
831
- getRefNameMapForAdapter(adapterConf: {
832
- [x: string]: unknown;
833
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
834
- [x: string]: string;
835
- }>;
836
- getReverseRefNameMapForAdapter(adapterConf: {
837
- [x: string]: unknown;
838
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
839
- [x: string]: string;
840
- }>;
841
- afterCreate(): void;
842
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
843
- } & {
844
- getCanonicalAssemblyName(asmName: string): string | undefined;
845
- getCanonicalAssemblyName2(asmName: string): string;
846
- get(asmName: string): ({
847
- configuration: any;
848
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
849
- error: unknown;
850
- loadingP: Promise<void> | undefined;
851
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
852
- refNameAliases: {
853
- [x: string]: string;
854
- } | undefined;
855
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
856
- } & {
857
- getConf(arg: string): any;
858
- readonly lowerCaseRefNameAliases: {
859
- [k: string]: string;
860
- } | undefined;
861
- } & {
862
- readonly initialized: boolean;
863
- readonly name: string;
864
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
865
- readonly aliases: string[];
866
- readonly displayName: string;
867
- hasName(name: string): boolean;
868
- readonly allAliases: string[];
869
- readonly allRefNames: string[] | undefined;
870
- readonly lowerCaseRefNames: string[] | undefined;
871
- readonly allRefNamesWithLowerCase: string[] | undefined;
872
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
873
- readonly refNameColors: string[];
874
- } & {
875
- readonly refNames: string[] | undefined;
876
- } & {
877
- getCanonicalRefName(refName: string): string | undefined;
878
- getCanonicalRefName2(asmName: string): string;
879
- getRefNameColor(refName: string): string | undefined;
880
- isValidRefName(refName: string): boolean;
881
- } & {
882
- setLoaded({ regions, refNameAliases, cytobands, }: {
883
- regions: import("@jbrowse/core/util/types").Region[];
884
- refNameAliases: {
885
- [x: string]: string;
886
- };
887
- cytobands: import("@jbrowse/core/util").Feature[];
888
- }): void;
889
- setError(e: unknown): void;
890
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
891
- setRefNameAliases(aliases: {
892
- [x: string]: string;
893
- }): void;
894
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
895
- setLoadingP(p?: Promise<void>): void;
896
- load(): Promise<void>;
897
- loadPre(): Promise<void>;
898
- } & {
899
- getAdapterMapEntry(adapterConf: {
900
- [x: string]: unknown;
901
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
902
- getRefNameMapForAdapter(adapterConf: {
903
- [x: string]: unknown;
904
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
905
- [x: string]: string;
906
- }>;
907
- getReverseRefNameMapForAdapter(adapterConf: {
908
- [x: string]: unknown;
909
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
910
- [x: string]: string;
911
- }>;
912
- afterCreate(): void;
913
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
914
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
915
- }, {
916
- error: unknown;
917
- loadingP: Promise<void> | undefined;
918
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
919
- refNameAliases: {
920
- [x: string]: string;
921
- } | undefined;
922
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
923
- } & {
924
- getConf(arg: string): any;
925
- readonly lowerCaseRefNameAliases: {
926
- [k: string]: string;
927
- } | undefined;
928
- } & {
929
- readonly initialized: boolean;
930
- readonly name: string;
931
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
932
- readonly aliases: string[];
933
- readonly displayName: string;
934
- hasName(name: string): boolean;
935
- readonly allAliases: string[];
936
- readonly allRefNames: string[] | undefined;
937
- readonly lowerCaseRefNames: string[] | undefined;
938
- readonly allRefNamesWithLowerCase: string[] | undefined;
939
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
940
- readonly refNameColors: string[];
941
- } & {
942
- readonly refNames: string[] | undefined;
943
- } & {
944
- getCanonicalRefName(refName: string): string | undefined;
945
- getCanonicalRefName2(asmName: string): string;
946
- getRefNameColor(refName: string): string | undefined;
947
- isValidRefName(refName: string): boolean;
948
- } & {
949
- setLoaded({ regions, refNameAliases, cytobands, }: {
950
- regions: import("@jbrowse/core/util/types").Region[];
951
- refNameAliases: {
952
- [x: string]: string;
953
- };
954
- cytobands: import("@jbrowse/core/util").Feature[];
955
- }): void;
956
- setError(e: unknown): void;
957
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
958
- setRefNameAliases(aliases: {
959
- [x: string]: string;
960
- }): void;
961
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
962
- setLoadingP(p?: Promise<void>): void;
963
- load(): Promise<void>;
964
- loadPre(): Promise<void>;
965
- } & {
966
- getAdapterMapEntry(adapterConf: {
967
- [x: string]: unknown;
968
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
969
- getRefNameMapForAdapter(adapterConf: {
970
- [x: string]: unknown;
971
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
972
- [x: string]: string;
973
- }>;
974
- getReverseRefNameMapForAdapter(adapterConf: {
975
- [x: string]: unknown;
976
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
977
- [x: string]: string;
978
- }>;
979
- afterCreate(): void;
980
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
981
- readonly assemblyNamesList: any[];
982
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
983
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
984
- } & {
985
- waitForAssembly(assemblyName: string): Promise<({
986
- configuration: any;
987
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
988
- error: unknown;
989
- loadingP: Promise<void> | undefined;
990
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
991
- refNameAliases: {
992
- [x: string]: string;
993
- } | undefined;
994
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
995
- } & {
996
- getConf(arg: string): any;
997
- readonly lowerCaseRefNameAliases: {
998
- [k: string]: string;
999
- } | undefined;
1000
- } & {
1001
- readonly initialized: boolean;
1002
- readonly name: string;
1003
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1004
- readonly aliases: string[];
1005
- readonly displayName: string;
1006
- hasName(name: string): boolean;
1007
- readonly allAliases: string[];
1008
- readonly allRefNames: string[] | undefined;
1009
- readonly lowerCaseRefNames: string[] | undefined;
1010
- readonly allRefNamesWithLowerCase: string[] | undefined;
1011
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1012
- readonly refNameColors: string[];
1013
- } & {
1014
- readonly refNames: string[] | undefined;
1015
- } & {
1016
- getCanonicalRefName(refName: string): string | undefined;
1017
- getCanonicalRefName2(asmName: string): string;
1018
- getRefNameColor(refName: string): string | undefined;
1019
- isValidRefName(refName: string): boolean;
1020
- } & {
1021
- setLoaded({ regions, refNameAliases, cytobands, }: {
1022
- regions: import("@jbrowse/core/util/types").Region[];
1023
- refNameAliases: {
1024
- [x: string]: string;
1025
- };
1026
- cytobands: import("@jbrowse/core/util").Feature[];
1027
- }): void;
1028
- setError(e: unknown): void;
1029
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1030
- setRefNameAliases(aliases: {
1031
- [x: string]: string;
1032
- }): void;
1033
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1034
- setLoadingP(p?: Promise<void>): void;
1035
- load(): Promise<void>;
1036
- loadPre(): Promise<void>;
1037
- } & {
1038
- getAdapterMapEntry(adapterConf: {
1039
- [x: string]: unknown;
1040
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1041
- getRefNameMapForAdapter(adapterConf: {
1042
- [x: string]: unknown;
1043
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1044
- [x: string]: string;
1045
- }>;
1046
- getReverseRefNameMapForAdapter(adapterConf: {
1047
- [x: string]: unknown;
1048
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1049
- [x: string]: string;
1050
- }>;
1051
- afterCreate(): void;
1052
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1053
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1054
- }, {
1055
- error: unknown;
1056
- loadingP: Promise<void> | undefined;
1057
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1058
- refNameAliases: {
1059
- [x: string]: string;
1060
- } | undefined;
1061
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1062
- } & {
1063
- getConf(arg: string): any;
1064
- readonly lowerCaseRefNameAliases: {
1065
- [k: string]: string;
1066
- } | undefined;
1067
- } & {
1068
- readonly initialized: boolean;
1069
- readonly name: string;
1070
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1071
- readonly aliases: string[];
1072
- readonly displayName: string;
1073
- hasName(name: string): boolean;
1074
- readonly allAliases: string[];
1075
- readonly allRefNames: string[] | undefined;
1076
- readonly lowerCaseRefNames: string[] | undefined;
1077
- readonly allRefNamesWithLowerCase: string[] | undefined;
1078
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1079
- readonly refNameColors: string[];
1080
- } & {
1081
- readonly refNames: string[] | undefined;
1082
- } & {
1083
- getCanonicalRefName(refName: string): string | undefined;
1084
- getCanonicalRefName2(asmName: string): string;
1085
- getRefNameColor(refName: string): string | undefined;
1086
- isValidRefName(refName: string): boolean;
1087
- } & {
1088
- setLoaded({ regions, refNameAliases, cytobands, }: {
1089
- regions: import("@jbrowse/core/util/types").Region[];
1090
- refNameAliases: {
1091
- [x: string]: string;
1092
- };
1093
- cytobands: import("@jbrowse/core/util").Feature[];
1094
- }): void;
1095
- setError(e: unknown): void;
1096
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1097
- setRefNameAliases(aliases: {
1098
- [x: string]: string;
1099
- }): void;
1100
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1101
- setLoadingP(p?: Promise<void>): void;
1102
- load(): Promise<void>;
1103
- loadPre(): Promise<void>;
1104
- } & {
1105
- getAdapterMapEntry(adapterConf: {
1106
- [x: string]: unknown;
1107
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1108
- getRefNameMapForAdapter(adapterConf: {
1109
- [x: string]: unknown;
1110
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1111
- [x: string]: string;
1112
- }>;
1113
- getReverseRefNameMapForAdapter(adapterConf: {
1114
- [x: string]: unknown;
1115
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1116
- [x: string]: string;
1117
- }>;
1118
- afterCreate(): void;
1119
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1120
- getRefNameMapForAdapter(adapterConf: {
1121
- [x: string]: unknown;
1122
- }, assemblyName: string | undefined, opts: {
1123
- stopToken?: string;
1124
- sessionId: string;
1125
- }): Promise<{
1126
- [x: string]: string;
1127
- } | undefined>;
1128
- getReverseRefNameMapForAdapter(adapterConf: {
1129
- [x: string]: unknown;
1130
- }, assemblyName: string | undefined, opts: {
1131
- stopToken?: string;
1132
- sessionId: string;
1133
- }): Promise<{
1134
- [x: string]: string;
1135
- } | undefined>;
1136
- isValidRefName(refName: string, assemblyName: string): boolean;
1137
- } & {
1138
- afterAttach(): void;
1139
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1140
- addAssembly(configuration: any): void;
1141
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
1142
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1143
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1144
- adminMode: boolean;
1145
- error: unknown;
1146
- textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1147
- pluginManager: PluginManager;
1148
- } & {
1149
- setError(error: unknown): void;
1150
- setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
1151
- setDefaultSession(): void;
1152
- setSessionPath(path: string): void;
1153
- renameCurrentSession(newName: string): void;
1154
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1155
- jbrowse: import("mobx-state-tree").IAnyType;
1156
- session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
1157
- sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
1158
- assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
1159
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
1160
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1161
- }, {
1162
- error: unknown;
1163
- loadingP: Promise<void> | undefined;
1164
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1165
- refNameAliases: {
1166
- [x: string]: string;
1167
- } | undefined;
1168
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1169
- } & {
1170
- getConf(arg: string): any;
1171
- readonly lowerCaseRefNameAliases: {
1172
- [k: string]: string;
1173
- } | undefined;
1174
- } & {
1175
- readonly initialized: boolean;
1176
- readonly name: string;
1177
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1178
- readonly aliases: string[];
1179
- readonly displayName: string;
1180
- hasName(name: string): boolean;
1181
- readonly allAliases: string[];
1182
- readonly allRefNames: string[] | undefined;
1183
- readonly lowerCaseRefNames: string[] | undefined;
1184
- readonly allRefNamesWithLowerCase: string[] | undefined;
1185
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1186
- readonly refNameColors: string[];
1187
- } & {
1188
- readonly refNames: string[] | undefined;
1189
- } & {
1190
- getCanonicalRefName(refName: string): string | undefined;
1191
- getCanonicalRefName2(asmName: string): string;
1192
- getRefNameColor(refName: string): string | undefined;
1193
- isValidRefName(refName: string): boolean;
1194
- } & {
1195
- setLoaded({ regions, refNameAliases, cytobands, }: {
1196
- regions: import("@jbrowse/core/util/types").Region[];
1197
- refNameAliases: {
1198
- [x: string]: string;
1199
- };
1200
- cytobands: import("@jbrowse/core/util").Feature[];
1201
- }): void;
1202
- setError(e: unknown): void;
1203
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1204
- setRefNameAliases(aliases: {
1205
- [x: string]: string;
1206
- }): void;
1207
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1208
- setLoadingP(p?: Promise<void>): void;
1209
- load(): Promise<void>;
1210
- loadPre(): Promise<void>;
1211
- } & {
1212
- getAdapterMapEntry(adapterConf: {
1213
- [x: string]: unknown;
1214
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1215
- getRefNameMapForAdapter(adapterConf: {
1216
- [x: string]: unknown;
1217
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1218
- [x: string]: string;
1219
- }>;
1220
- getReverseRefNameMapForAdapter(adapterConf: {
1221
- [x: string]: unknown;
1222
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1223
- [x: string]: string;
1224
- }>;
1225
- afterCreate(): void;
1226
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1227
- }, {
1228
- readonly assemblyNameMap: Record<string, {
1229
- configuration: any;
1230
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1231
- error: unknown;
1232
- loadingP: Promise<void> | undefined;
1233
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1234
- refNameAliases: {
1235
- [x: string]: string;
1236
- } | undefined;
1237
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1238
- } & {
1239
- getConf(arg: string): any;
1240
- readonly lowerCaseRefNameAliases: {
1241
- [k: string]: string;
1242
- } | undefined;
1243
- } & {
1244
- readonly initialized: boolean;
1245
- readonly name: string;
1246
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1247
- readonly aliases: string[];
1248
- readonly displayName: string;
1249
- hasName(name: string): boolean;
1250
- readonly allAliases: string[];
1251
- readonly allRefNames: string[] | undefined;
1252
- readonly lowerCaseRefNames: string[] | undefined;
1253
- readonly allRefNamesWithLowerCase: string[] | undefined;
1254
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1255
- readonly refNameColors: string[];
1256
- } & {
1257
- readonly refNames: string[] | undefined;
1258
- } & {
1259
- getCanonicalRefName(refName: string): string | undefined;
1260
- getCanonicalRefName2(asmName: string): string;
1261
- getRefNameColor(refName: string): string | undefined;
1262
- isValidRefName(refName: string): boolean;
1263
- } & {
1264
- setLoaded({ regions, refNameAliases, cytobands, }: {
1265
- regions: import("@jbrowse/core/util/types").Region[];
1266
- refNameAliases: {
1267
- [x: string]: string;
1268
- };
1269
- cytobands: import("@jbrowse/core/util").Feature[];
1270
- }): void;
1271
- setError(e: unknown): void;
1272
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1273
- setRefNameAliases(aliases: {
1274
- [x: string]: string;
1275
- }): void;
1276
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1277
- setLoadingP(p?: Promise<void>): void;
1278
- load(): Promise<void>;
1279
- loadPre(): Promise<void>;
1280
- } & {
1281
- getAdapterMapEntry(adapterConf: {
1282
- [x: string]: unknown;
1283
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1284
- getRefNameMapForAdapter(adapterConf: {
1285
- [x: string]: unknown;
1286
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1287
- [x: string]: string;
1288
- }>;
1289
- getReverseRefNameMapForAdapter(adapterConf: {
1290
- [x: string]: unknown;
1291
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1292
- [x: string]: string;
1293
- }>;
1294
- afterCreate(): void;
1295
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1296
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1297
- }, {
1298
- error: unknown;
1299
- loadingP: Promise<void> | undefined;
1300
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1301
- refNameAliases: {
1302
- [x: string]: string;
1303
- } | undefined;
1304
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1305
- } & {
1306
- getConf(arg: string): any;
1307
- readonly lowerCaseRefNameAliases: {
1308
- [k: string]: string;
1309
- } | undefined;
1310
- } & {
1311
- readonly initialized: boolean;
1312
- readonly name: string;
1313
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1314
- readonly aliases: string[];
1315
- readonly displayName: string;
1316
- hasName(name: string): boolean;
1317
- readonly allAliases: string[];
1318
- readonly allRefNames: string[] | undefined;
1319
- readonly lowerCaseRefNames: string[] | undefined;
1320
- readonly allRefNamesWithLowerCase: string[] | undefined;
1321
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1322
- readonly refNameColors: string[];
1323
- } & {
1324
- readonly refNames: string[] | undefined;
1325
- } & {
1326
- getCanonicalRefName(refName: string): string | undefined;
1327
- getCanonicalRefName2(asmName: string): string;
1328
- getRefNameColor(refName: string): string | undefined;
1329
- isValidRefName(refName: string): boolean;
1330
- } & {
1331
- setLoaded({ regions, refNameAliases, cytobands, }: {
1332
- regions: import("@jbrowse/core/util/types").Region[];
1333
- refNameAliases: {
1334
- [x: string]: string;
1335
- };
1336
- cytobands: import("@jbrowse/core/util").Feature[];
1337
- }): void;
1338
- setError(e: unknown): void;
1339
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1340
- setRefNameAliases(aliases: {
1341
- [x: string]: string;
1342
- }): void;
1343
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1344
- setLoadingP(p?: Promise<void>): void;
1345
- load(): Promise<void>;
1346
- loadPre(): Promise<void>;
1347
- } & {
1348
- getAdapterMapEntry(adapterConf: {
1349
- [x: string]: unknown;
1350
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1351
- getRefNameMapForAdapter(adapterConf: {
1352
- [x: string]: unknown;
1353
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1354
- [x: string]: string;
1355
- }>;
1356
- getReverseRefNameMapForAdapter(adapterConf: {
1357
- [x: string]: unknown;
1358
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1359
- [x: string]: string;
1360
- }>;
1361
- afterCreate(): void;
1362
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1363
- } & {
1364
- getCanonicalAssemblyName(asmName: string): string | undefined;
1365
- getCanonicalAssemblyName2(asmName: string): string;
1366
- get(asmName: string): ({
1367
- configuration: any;
1368
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1369
- error: unknown;
1370
- loadingP: Promise<void> | undefined;
1371
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1372
- refNameAliases: {
1373
- [x: string]: string;
1374
- } | undefined;
1375
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1376
- } & {
1377
- getConf(arg: string): any;
1378
- readonly lowerCaseRefNameAliases: {
1379
- [k: string]: string;
1380
- } | undefined;
1381
- } & {
1382
- readonly initialized: boolean;
1383
- readonly name: string;
1384
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1385
- readonly aliases: string[];
1386
- readonly displayName: string;
1387
- hasName(name: string): boolean;
1388
- readonly allAliases: string[];
1389
- readonly allRefNames: string[] | undefined;
1390
- readonly lowerCaseRefNames: string[] | undefined;
1391
- readonly allRefNamesWithLowerCase: string[] | undefined;
1392
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1393
- readonly refNameColors: string[];
1394
- } & {
1395
- readonly refNames: string[] | undefined;
1396
- } & {
1397
- getCanonicalRefName(refName: string): string | undefined;
1398
- getCanonicalRefName2(asmName: string): string;
1399
- getRefNameColor(refName: string): string | undefined;
1400
- isValidRefName(refName: string): boolean;
1401
- } & {
1402
- setLoaded({ regions, refNameAliases, cytobands, }: {
1403
- regions: import("@jbrowse/core/util/types").Region[];
1404
- refNameAliases: {
1405
- [x: string]: string;
1406
- };
1407
- cytobands: import("@jbrowse/core/util").Feature[];
1408
- }): void;
1409
- setError(e: unknown): void;
1410
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1411
- setRefNameAliases(aliases: {
1412
- [x: string]: string;
1413
- }): void;
1414
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1415
- setLoadingP(p?: Promise<void>): void;
1416
- load(): Promise<void>;
1417
- loadPre(): Promise<void>;
1418
- } & {
1419
- getAdapterMapEntry(adapterConf: {
1420
- [x: string]: unknown;
1421
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1422
- getRefNameMapForAdapter(adapterConf: {
1423
- [x: string]: unknown;
1424
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1425
- [x: string]: string;
1426
- }>;
1427
- getReverseRefNameMapForAdapter(adapterConf: {
1428
- [x: string]: unknown;
1429
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1430
- [x: string]: string;
1431
- }>;
1432
- afterCreate(): void;
1433
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1434
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1435
- }, {
1436
- error: unknown;
1437
- loadingP: Promise<void> | undefined;
1438
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1439
- refNameAliases: {
1440
- [x: string]: string;
1441
- } | undefined;
1442
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1443
- } & {
1444
- getConf(arg: string): any;
1445
- readonly lowerCaseRefNameAliases: {
1446
- [k: string]: string;
1447
- } | undefined;
1448
- } & {
1449
- readonly initialized: boolean;
1450
- readonly name: string;
1451
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1452
- readonly aliases: string[];
1453
- readonly displayName: string;
1454
- hasName(name: string): boolean;
1455
- readonly allAliases: string[];
1456
- readonly allRefNames: string[] | undefined;
1457
- readonly lowerCaseRefNames: string[] | undefined;
1458
- readonly allRefNamesWithLowerCase: string[] | undefined;
1459
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1460
- readonly refNameColors: string[];
1461
- } & {
1462
- readonly refNames: string[] | undefined;
1463
- } & {
1464
- getCanonicalRefName(refName: string): string | undefined;
1465
- getCanonicalRefName2(asmName: string): string;
1466
- getRefNameColor(refName: string): string | undefined;
1467
- isValidRefName(refName: string): boolean;
1468
- } & {
1469
- setLoaded({ regions, refNameAliases, cytobands, }: {
1470
- regions: import("@jbrowse/core/util/types").Region[];
1471
- refNameAliases: {
1472
- [x: string]: string;
1473
- };
1474
- cytobands: import("@jbrowse/core/util").Feature[];
1475
- }): void;
1476
- setError(e: unknown): void;
1477
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1478
- setRefNameAliases(aliases: {
1479
- [x: string]: string;
1480
- }): void;
1481
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1482
- setLoadingP(p?: Promise<void>): void;
1483
- load(): Promise<void>;
1484
- loadPre(): Promise<void>;
1485
- } & {
1486
- getAdapterMapEntry(adapterConf: {
1487
- [x: string]: unknown;
1488
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1489
- getRefNameMapForAdapter(adapterConf: {
1490
- [x: string]: unknown;
1491
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1492
- [x: string]: string;
1493
- }>;
1494
- getReverseRefNameMapForAdapter(adapterConf: {
1495
- [x: string]: unknown;
1496
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1497
- [x: string]: string;
1498
- }>;
1499
- afterCreate(): void;
1500
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1501
- readonly assemblyNamesList: any[];
1502
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
1503
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1504
- } & {
1505
- waitForAssembly(assemblyName: string): Promise<({
1506
- configuration: any;
1507
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1508
- error: unknown;
1509
- loadingP: Promise<void> | undefined;
1510
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1511
- refNameAliases: {
1512
- [x: string]: string;
1513
- } | undefined;
1514
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1515
- } & {
1516
- getConf(arg: string): any;
1517
- readonly lowerCaseRefNameAliases: {
1518
- [k: string]: string;
1519
- } | undefined;
1520
- } & {
1521
- readonly initialized: boolean;
1522
- readonly name: string;
1523
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1524
- readonly aliases: string[];
1525
- readonly displayName: string;
1526
- hasName(name: string): boolean;
1527
- readonly allAliases: string[];
1528
- readonly allRefNames: string[] | undefined;
1529
- readonly lowerCaseRefNames: string[] | undefined;
1530
- readonly allRefNamesWithLowerCase: string[] | undefined;
1531
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1532
- readonly refNameColors: string[];
1533
- } & {
1534
- readonly refNames: string[] | undefined;
1535
- } & {
1536
- getCanonicalRefName(refName: string): string | undefined;
1537
- getCanonicalRefName2(asmName: string): string;
1538
- getRefNameColor(refName: string): string | undefined;
1539
- isValidRefName(refName: string): boolean;
1540
- } & {
1541
- setLoaded({ regions, refNameAliases, cytobands, }: {
1542
- regions: import("@jbrowse/core/util/types").Region[];
1543
- refNameAliases: {
1544
- [x: string]: string;
1545
- };
1546
- cytobands: import("@jbrowse/core/util").Feature[];
1547
- }): void;
1548
- setError(e: unknown): void;
1549
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1550
- setRefNameAliases(aliases: {
1551
- [x: string]: string;
1552
- }): void;
1553
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1554
- setLoadingP(p?: Promise<void>): void;
1555
- load(): Promise<void>;
1556
- loadPre(): Promise<void>;
1557
- } & {
1558
- getAdapterMapEntry(adapterConf: {
1559
- [x: string]: unknown;
1560
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1561
- getRefNameMapForAdapter(adapterConf: {
1562
- [x: string]: unknown;
1563
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1564
- [x: string]: string;
1565
- }>;
1566
- getReverseRefNameMapForAdapter(adapterConf: {
1567
- [x: string]: unknown;
1568
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1569
- [x: string]: string;
1570
- }>;
1571
- afterCreate(): void;
1572
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1573
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1574
- }, {
1575
- error: unknown;
1576
- loadingP: Promise<void> | undefined;
1577
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1578
- refNameAliases: {
1579
- [x: string]: string;
1580
- } | undefined;
1581
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1582
- } & {
1583
- getConf(arg: string): any;
1584
- readonly lowerCaseRefNameAliases: {
1585
- [k: string]: string;
1586
- } | undefined;
1587
- } & {
1588
- readonly initialized: boolean;
1589
- readonly name: string;
1590
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1591
- readonly aliases: string[];
1592
- readonly displayName: string;
1593
- hasName(name: string): boolean;
1594
- readonly allAliases: string[];
1595
- readonly allRefNames: string[] | undefined;
1596
- readonly lowerCaseRefNames: string[] | undefined;
1597
- readonly allRefNamesWithLowerCase: string[] | undefined;
1598
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1599
- readonly refNameColors: string[];
1600
- } & {
1601
- readonly refNames: string[] | undefined;
1602
- } & {
1603
- getCanonicalRefName(refName: string): string | undefined;
1604
- getCanonicalRefName2(asmName: string): string;
1605
- getRefNameColor(refName: string): string | undefined;
1606
- isValidRefName(refName: string): boolean;
1607
- } & {
1608
- setLoaded({ regions, refNameAliases, cytobands, }: {
1609
- regions: import("@jbrowse/core/util/types").Region[];
1610
- refNameAliases: {
1611
- [x: string]: string;
1612
- };
1613
- cytobands: import("@jbrowse/core/util").Feature[];
1614
- }): void;
1615
- setError(e: unknown): void;
1616
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1617
- setRefNameAliases(aliases: {
1618
- [x: string]: string;
1619
- }): void;
1620
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1621
- setLoadingP(p?: Promise<void>): void;
1622
- load(): Promise<void>;
1623
- loadPre(): Promise<void>;
1624
- } & {
1625
- getAdapterMapEntry(adapterConf: {
1626
- [x: string]: unknown;
1627
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1628
- getRefNameMapForAdapter(adapterConf: {
1629
- [x: string]: unknown;
1630
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1631
- [x: string]: string;
1632
- }>;
1633
- getReverseRefNameMapForAdapter(adapterConf: {
1634
- [x: string]: unknown;
1635
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1636
- [x: string]: string;
1637
- }>;
1638
- afterCreate(): void;
1639
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1640
- getRefNameMapForAdapter(adapterConf: {
1641
- [x: string]: unknown;
1642
- }, assemblyName: string | undefined, opts: {
1643
- stopToken?: string;
1644
- sessionId: string;
1645
- }): Promise<{
1646
- [x: string]: string;
1647
- } | undefined>;
1648
- getReverseRefNameMapForAdapter(adapterConf: {
1649
- [x: string]: unknown;
1650
- }, assemblyName: string | undefined, opts: {
1651
- stopToken?: string;
1652
- sessionId: string;
1653
- }): Promise<{
1654
- [x: string]: string;
1655
- } | undefined>;
1656
- isValidRefName(refName: string, assemblyName: string): boolean;
1657
- } & {
1658
- afterAttach(): void;
1659
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1660
- addAssembly(configuration: any): void;
1661
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
1662
- }, {
1663
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1664
- adminMode: boolean;
1665
- error: unknown;
1666
- textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1667
- pluginManager: PluginManager;
1668
- } & {
1669
- setError(error: unknown): void;
1670
- setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
1671
- setDefaultSession(): void;
1672
- setSessionPath(path: string): void;
1673
- renameCurrentSession(newName: string): void;
1674
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1675
- } & {
1676
- readonly jbrowse: any;
1677
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1678
- readonly configuration: {
1679
- [x: string]: any;
1680
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1681
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1682
- [x: string]: any;
1683
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1684
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1685
- [x: string]: any;
1686
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1687
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1688
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
1689
- readonly adminMode: boolean;
1690
- readonly textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1691
- } & {
1692
- readonly assemblies: Instance<import("@jbrowse/core/assemblyManager").BaseAssemblyConfigSchema>[];
1693
- } & {
1694
- setSelection(thing: unknown): void;
1695
- clearSelection(): void;
1696
- setHovered(thing: unknown): void;
1697
- } & {
1698
- readonly visibleWidget: any;
1699
- } & {
1700
- setDrawerPosition(arg: string): void;
1701
- updateDrawerWidth(drawerWidth: number): number;
1702
- resizeDrawer(distance: number): number;
1703
- addWidget(typeName: string, id: string, initialState?: {}, conf?: unknown): any;
1704
- showWidget(widget: any): void;
1705
- hasWidget(widget: any): boolean;
1706
- hideWidget(widget: any): void;
1707
- minimizeWidgetDrawer(): void;
1708
- showWidgetDrawer(): void;
1709
- hideAllWidgets(): void;
1710
- editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1711
- afterAttach(): void;
1712
- } & {
1713
- readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
1714
- } & {
1715
- makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): ({
1716
- name: string;
1717
- tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
1718
- configuration: {
1719
- [x: string]: any;
1720
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1721
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1722
- [x: string]: any;
1723
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1724
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1725
- [x: string]: any;
1726
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1727
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1728
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1729
- name: {
1730
- type: string;
1731
- defaultValue: string;
1732
- description: string;
1733
- };
1734
- assemblyNames: {
1735
- type: string;
1736
- defaultValue: never[];
1737
- description: string;
1738
- };
1739
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
1740
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1741
- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1742
- } & {
1743
- afterAttach(): void;
1744
- addTrackConf(trackConf: Record<string, unknown> | ({
1745
- [x: string]: any;
1746
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1747
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1748
- [x: string]: any;
1749
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1750
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1751
- [x: string]: any;
1752
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1753
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1754
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
1755
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
1756
- [x: string]: any;
1757
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1758
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1759
- [x: string]: any;
1760
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1761
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1762
- [x: string]: any;
1763
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1764
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1765
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
1766
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
1767
- clear(): void;
1768
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1769
- name: import("mobx-state-tree").ISimpleType<string>;
1770
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
1771
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1772
- name: {
1773
- type: string;
1774
- defaultValue: string;
1775
- description: string;
1776
- };
1777
- assemblyNames: {
1778
- type: string;
1779
- defaultValue: never[];
1780
- description: string;
1781
- };
1782
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
1783
- }, {
1784
- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1785
- } & {
1786
- afterAttach(): void;
1787
- addTrackConf(trackConf: Record<string, unknown> | ({
1788
- [x: string]: any;
1789
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1790
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1791
- [x: string]: any;
1792
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1793
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1794
- [x: string]: any;
1795
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1796
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1797
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
1798
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
1799
- [x: string]: any;
1800
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1801
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1802
- [x: string]: any;
1803
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1804
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1805
- [x: string]: any;
1806
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1807
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1808
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
1809
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
1810
- clear(): void;
1811
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1812
- prepareToBreakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
1813
- breakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1814
- deleteConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1815
- addConnectionConf(connectionConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1816
- clearConnections(): void;
1817
- } & {
1818
- queueOfDialogs: [import("@jbrowse/core/util/types").DialogComponentType, unknown][];
1819
- } & {
1820
- readonly DialogComponent: import("@jbrowse/core/util/types").DialogComponentType | undefined;
1821
- readonly DialogProps: unknown;
1822
- } & {
1823
- removeActiveDialog(): void;
1824
- queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util/types").DialogComponentType, unknown]): void;
1825
- } & {
1826
- getReferring(object: import("mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
1827
- } & {
1828
- removeReferring(referring: import("@jbrowse/product-core").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
1829
- } & {
1830
- readonly tracks: import("@jbrowse/core/configuration").AnyConfigurationModel[];
1831
- } & {
1832
- addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
1833
- deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1834
- } & {
1835
- snackbarMessages: import("mobx").IObservableArray<import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
1836
- } & {
1837
- readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
1838
- } & {
1839
- notify(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
1840
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
1841
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
1842
- popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
1843
- removeSnackbarMessage(message: string): void;
1844
- } & {
1845
- task: undefined;
1846
- } & {
1847
- readonly version: any;
1848
- readonly assemblies: any[];
1849
- readonly assemblyNames: any[];
1850
- readonly connections: any;
1851
- readonly assemblyManager: any;
1852
- readonly views: any[];
1853
- renderProps(): {
1854
- theme: any;
1855
- highResolutionScaling: any;
1856
- };
1857
- } & {
1858
- addView(typeName: string, initialState?: {}): any;
1859
- removeView(): void;
1860
- } & {
1861
- getTrackActionMenuItems(config: any): {
1862
- label: string;
1863
- onClick: () => void;
1864
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1865
- muiName: string;
1866
- };
1867
- }[];
1868
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
1869
- export type SessionStateModel = ReturnType<typeof sessionModelFactory>;
1870
- export type SessionModel = Instance<SessionStateModel>;