@jbrowse/react-circular-genome-view2 3.6.5 → 4.0.0

package/esm/createViewState.js

@@ -1,6 +1,6 @@
+import { onPatch } from '@jbrowse/mobx-state-tree';
 import { autorun } from 'mobx';
-import { onPatch } from 'mobx-state-tree';
-import createModel from './createModel';
+import createModel from "./createModel/index.js";
 export default function createViewState(opts) {
     const { assembly, tracks, internetAccounts, configuration, aggregateTextSearchAdapters, plugins, makeWorkerInstance, onChange, } = opts;
     const { model, pluginManager } = createModel(plugins || [], makeWorkerInstance);
@@ -39,12 +39,11 @@ export default function createViewState(opts) {
     pluginManager.setRootModel(stateTree);
     pluginManager.configure();
     autorun(reaction => {
-        var _a;
         const { session, assemblyManager } = stateTree;
         if (!session.view.initialized) {
             return;
         }
-        const regions = (_a = assemblyManager.get(assembly === null || assembly === void 0 ? void 0 : assembly.name)) === null || _a === void 0 ? void 0 : _a.regions;
+        const regions = assemblyManager.get(assembly?.name)?.regions;
         if (!regions) {
             return;
         }

package/esm/index.d.ts

@@ -1,4 +1,4 @@
-export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';
+export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView/index.ts';
+export { default as createModel } from './createModel/index.ts';
+export { default as createViewState } from './createViewState.ts';
+export { default as loadPlugins } from './loadPlugins.ts';

package/esm/index.js

@@ -1,4 +1,4 @@
-export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';
+export { default as JBrowseCircularGenomeView } from "./JBrowseCircularGenomeView/index.js";
+export { default as createModel } from "./createModel/index.js";
+export { default as createViewState } from "./createViewState.js";
+export { default as loadPlugins } from "./loadPlugins.js";

package/esm/loadPlugins.js

@@ -2,5 +2,5 @@ import PluginLoader from '@jbrowse/core/PluginLoader';
 export default async function loadPlugins(pluginDefinitions, args) {
     const pluginLoader = new PluginLoader(pluginDefinitions, args);
     pluginLoader.installGlobalReExports(window);
-    return pluginLoader.load(args === null || args === void 0 ? void 0 : args.baseUrl);
+    return pluginLoader.load(args?.baseUrl);
 }

package/esm/types.d.ts

@@ -1,4 +1,4 @@
-import type { IAnyStateTreeNode } from 'mobx-state-tree';
+import type { IAnyStateTreeNode } from '@jbrowse/mobx-state-tree';
 export interface ReferringNode {
     node: IAnyStateTreeNode;
     key: string;

package/esm/version.d.ts

@@ -1 +1 @@
-export const version: "3.6.5";
+export declare const version = "4.0.0";

package/esm/version.js

@@ -1 +1 @@
-export const version = '3.6.5';
+export const version = '4.0.0';

package/esm/webpack.d.ts

@@ -1,7 +1,7 @@
 import * as React from 'react';
-export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';
+export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView/index.ts';
+export { default as createModel } from './createModel/index.ts';
+export { default as createViewState } from './createViewState.ts';
+export { default as loadPlugins } from './loadPlugins.ts';
 export * from 'react-dom/client';
 export { React };

package/esm/webpack.js

@@ -1,7 +1,7 @@
 import * as React from 'react';
-export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';
+export { default as JBrowseCircularGenomeView } from "./JBrowseCircularGenomeView/index.js";
+export { default as createModel } from "./createModel/index.js";
+export { default as createViewState } from "./createViewState.js";
+export { default as loadPlugins } from "./loadPlugins.js";
 export * from 'react-dom/client';
 export { React };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/react-circular-genome-view2",
-  "version": "3.6.5",
+  "version": "4.0.0",
   "description": "JBrowse 2 circular genome view React component",
   "keywords": [
     "jbrowse",
@@ -15,48 +15,36 @@
     "directory": "products/jbrowse-react-circular-genome-view"
   },
   "author": "JBrowse Team",
-  "main": "dist/index.js",
-  "module": "esm/index.js",
+  "main": "esm/index.js",
+  "exports": {
+    ".": {
+      "types": "./esm/index.d.ts",
+      "import": "./esm/index.js"
+    }
+  },
   "files": [
-    "dist",
     "esm",
     "docs"
   ],
-  "scripts": {
-    "prebuild": "npm run clean",
-    "build": "npm-run-all build:*",
-    "prepublishOnly": "node output-version.js > src/version.js && git add -A src && git commit -m '[skip ci] Bump version.js'",
-    "prepack": "npm run build",
-    "build:esm": "tsc -b tsconfig.build.esm.json",
-    "build:commonjs": "tsc -b tsconfig.build.commonjs.json",
-    "build:webpack": "webpack",
-    "clean": "rimraf esm dist *.tsbuildinfo",
-    "storybook": "storybook dev --port 6006",
-    "storybook:build": "storybook build"
-  },
   "dependencies": {
-    "@babel/runtime": "^7.17.9",
-    "@emotion/cache": "^11.7.1",
-    "@emotion/react": "^11.9.0",
-    "@emotion/styled": "^11.8.1",
-    "@jbrowse/core": "^3.6.5",
-    "@jbrowse/embedded-core": "^3.6.5",
-    "@jbrowse/plugin-authentication": "^3.6.5",
-    "@jbrowse/plugin-circular-view": "^3.6.5",
-    "@jbrowse/plugin-config": "^3.6.5",
-    "@jbrowse/plugin-data-management": "^3.6.5",
-    "@jbrowse/plugin-linear-genome-view": "^3.6.5",
-    "@jbrowse/plugin-sequence": "^3.6.5",
-    "@jbrowse/plugin-variants": "^3.6.5",
-    "@jbrowse/plugin-wiggle": "^3.6.5",
-    "@jbrowse/product-core": "^3.6.5",
-    "@mui/icons-material": "^7.0.0",
-    "@mui/material": "^7.0.0",
-    "mobx": "^6.6.0",
-    "mobx-react": "^9.0.0",
-    "mobx-state-tree": "^5.0.0",
-    "rxjs": "^7.0.0",
-    "tss-react": "^4.4.1"
+    "@emotion/cache": "^11.14.0",
+    "@emotion/react": "^11.14.0",
+    "@emotion/styled": "^11.14.1",
+    "@jbrowse/mobx-state-tree": "^5.5.0",
+    "@mui/icons-material": "^7.3.6",
+    "@mui/material": "^7.3.6",
+    "mobx": "^6.15.0",
+    "mobx-react": "^9.2.1",
+    "@jbrowse/embedded-core": "^4.0.0",
+    "@jbrowse/plugin-circular-view": "^4.0.0",
+    "@jbrowse/plugin-authentication": "^4.0.0",
+    "@jbrowse/plugin-config": "^4.0.0",
+    "@jbrowse/plugin-sequence": "^4.0.0",
+    "@jbrowse/plugin-data-management": "^4.0.0",
+    "@jbrowse/core": "^4.0.0",
+    "@jbrowse/plugin-wiggle": "^4.0.0",
+    "@jbrowse/plugin-variants": "^4.0.0",
+    "@jbrowse/product-core": "^4.0.0"
   },
   "peerDependencies": {
     "react": ">=18.0.0"
@@ -64,5 +52,15 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "354d0a87b757b4d84f824b47507662f6f3a1693f"
-}
+  "sideEffects": false,
+  "scripts": {
+    "prebuild": "pnpm clean",
+    "build": "pnpm run /^build:/",
+    "build:esm": "tsc -p tsconfig.build.esm.json",
+    "build:webpack": "webpack",
+    "clean": "rimraf esm dist *.tsbuildinfo",
+    "storybook": "storybook dev --port 6006",
+    "storybook:build": "storybook build"
+  },
+  "types": "esm/index.d.ts"
+}

package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts

@@ -1,5 +0,0 @@
-import type { ViewModel } from '../createModel/createModel';
-declare const JBrowseCircularGenomeView: ({ viewState, }: {
-    viewState: ViewModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default JBrowseCircularGenomeView;

package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js

@@ -1,23 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const embedded_core_1 = require("@jbrowse/embedded-core");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const JBrowseCircularGenomeView = (0, mobx_react_1.observer)(function ({ viewState, }) {
-    const { session } = viewState;
-    const { view } = session;
-    const { pluginManager } = (0, util_1.getEnv)(session);
-    const viewType = pluginManager.getViewType(view.type);
-    if (!viewType) {
-        throw new Error(`unknown view type ${view.type}`);
-    }
-    const { ReactComponent } = viewType;
-    const theme = (0, ui_1.createJBrowseTheme)((0, configuration_1.readConfObject)(viewState.config.configuration, 'theme'));
-    return ((0, jsx_runtime_1.jsxs)(material_1.ThemeProvider, { theme: theme, children: [(0, jsx_runtime_1.jsx)(embedded_core_1.EmbeddedViewContainer, { view: view, children: (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: (0, jsx_runtime_1.jsx)("div", { children: "Loading..." }), children: (0, jsx_runtime_1.jsx)(ReactComponent, { model: view, session: session }) }) }, `view-${view.id}`), (0, jsx_runtime_1.jsx)(embedded_core_1.ModalWidget, { session: session })] }));
-});
-exports.default = JBrowseCircularGenomeView;

package/dist/JBrowseCircularGenomeView/index.d.ts

@@ -1 +0,0 @@
-export { default } from './JBrowseCircularGenomeView';

package/dist/JBrowseCircularGenomeView/index.js

@@ -1,8 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = void 0;
-var JBrowseCircularGenomeView_1 = require("./JBrowseCircularGenomeView");
-Object.defineProperty(exports, "default", { enumerable: true, get: function () { return __importDefault(JBrowseCircularGenomeView_1).default; } });

package/dist/corePlugins.d.ts

@@ -1,3 +0,0 @@
-import Config from '@jbrowse/plugin-config';
-declare const corePlugins: (typeof Config)[];
-export default corePlugins;

package/dist/corePlugins.js

@@ -1,22 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const plugin_authentication_1 = __importDefault(require("@jbrowse/plugin-authentication"));
-const plugin_circular_view_1 = __importDefault(require("@jbrowse/plugin-circular-view"));
-const plugin_config_1 = __importDefault(require("@jbrowse/plugin-config"));
-const plugin_data_management_1 = __importDefault(require("@jbrowse/plugin-data-management"));
-const plugin_sequence_1 = __importDefault(require("@jbrowse/plugin-sequence"));
-const plugin_variants_1 = __importDefault(require("@jbrowse/plugin-variants"));
-const plugin_wiggle_1 = __importDefault(require("@jbrowse/plugin-wiggle"));
-const corePlugins = [
-    plugin_authentication_1.default,
-    plugin_config_1.default,
-    plugin_data_management_1.default,
-    plugin_circular_view_1.default,
-    plugin_sequence_1.default,
-    plugin_variants_1.default,
-    plugin_wiggle_1.default,
-];
-exports.default = corePlugins;

package/dist/createModel/AboutDialog.d.ts

@@ -1 +0,0 @@
-export { AboutDialog as default } from '@jbrowse/product-core';

package/dist/createModel/AboutDialog.js

@@ -1,5 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = void 0;
-var product_core_1 = require("@jbrowse/product-core");
-Object.defineProperty(exports, "default", { enumerable: true, get: function () { return product_core_1.AboutDialog; } });

package/dist/createModel/createConfigModel.d.ts

@@ -1,104 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-export default function createConfigModel(pluginManager: PluginManager, assemblyConfigSchemasType: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            defaultDriver: {
-                type: string;
-                description: string;
-                defaultValue: string;
-            };
-            drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        highResolutionScaling: {
-            type: string;
-            defaultValue: number;
-        };
-        formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            feature: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            subfeatures: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            depth: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-            maxDepth: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            config: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            hideUris: {
-                type: string;
-                defaultValue: boolean;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                trackNames: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-                categories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-            defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                categoryNames: {
-                    type: string;
-                    defaultValue: never[];
-                };
-                topLevelCategories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-                subCategories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        theme: {
-            type: string;
-            defaultValue: {};
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    assembly: AnyConfigurationSchemaType;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    plugins: import("mobx-state-tree").IType<any, any, any>;
-}, {
-    readonly assemblies: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>)[];
-    readonly assemblyName: string;
-    readonly rpcManager: any;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/createModel/createConfigModel.js

@@ -1,43 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = createConfigModel;
-const configuration_1 = require("@jbrowse/core/configuration");
-const RpcManager_1 = __importDefault(require("@jbrowse/core/rpc/RpcManager"));
-const product_core_1 = require("@jbrowse/product-core");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function createConfigModel(pluginManager, assemblyConfigSchemasType) {
-    return mobx_state_tree_1.types
-        .model('Configuration', {
-        configuration: (0, configuration_1.ConfigurationSchema)('Root', {
-            rpc: RpcManager_1.default.configSchema,
-            highResolutionScaling: {
-                type: 'number',
-                defaultValue: 2,
-            },
-            formatDetails: (0, product_core_1.FormatDetailsConfigSchemaFactory)(),
-            formatAbout: (0, product_core_1.FormatAboutConfigSchemaFactory)(),
-            hierarchical: (0, product_core_1.HierarchicalConfigSchemaFactory)(),
-            theme: { type: 'frozen', defaultValue: {} },
-        }),
-        assembly: assemblyConfigSchemasType,
-        tracks: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
-        internetAccounts: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('internet account')),
-        connections: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('connection')),
-        aggregateTextSearchAdapters: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('text search adapter')),
-        plugins: mobx_state_tree_1.types.frozen(),
-    })
-        .views(self => ({
-        get assemblies() {
-            return [self.assembly];
-        },
-        get assemblyName() {
-            return (0, configuration_1.readConfObject)(self.assembly, 'name');
-        },
-        get rpcManager() {
-            return (0, mobx_state_tree_1.getParent)(self).rpcManager;
-        },
-    }));
-}