@jbrowse/react-circular-genome-view2 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +1 -1
  2. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +1 -1
  3. package/esm/JBrowseCircularGenomeView/index.d.ts +1 -1
  4. package/esm/JBrowseCircularGenomeView/index.js +1 -1
  5. package/esm/corePlugins.d.ts +2 -2
  6. package/esm/createModel/createConfigModel.d.ts +25 -29
  7. package/esm/createModel/createConfigModel.js +1 -1
  8. package/esm/createModel/createModel.d.ts +524 -629
  9. package/esm/createModel/createModel.js +5 -5
  10. package/esm/createModel/createSessionModel.d.ts +250 -305
  11. package/esm/createModel/createSessionModel.js +5 -4
  12. package/esm/createModel/index.d.ts +3 -3
  13. package/esm/createModel/index.js +3 -3
  14. package/esm/createViewState.d.ts +1323 -1625
  15. package/esm/createViewState.js +3 -4
  16. package/esm/index.d.ts +4 -4
  17. package/esm/index.js +4 -4
  18. package/esm/loadPlugins.js +1 -1
  19. package/esm/types.d.ts +1 -1
  20. package/esm/version.d.ts +1 -1
  21. package/esm/version.js +1 -1
  22. package/esm/webpack.d.ts +4 -4
  23. package/esm/webpack.js +4 -4
  24. package/package.json +38 -40
  25. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +0 -5
  26. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +0 -23
  27. package/dist/JBrowseCircularGenomeView/index.d.ts +0 -1
  28. package/dist/JBrowseCircularGenomeView/index.js +0 -8
  29. package/dist/corePlugins.d.ts +0 -3
  30. package/dist/corePlugins.js +0 -22
  31. package/dist/createModel/AboutDialog.d.ts +0 -1
  32. package/dist/createModel/AboutDialog.js +0 -5
  33. package/dist/createModel/createConfigModel.d.ts +0 -104
  34. package/dist/createModel/createConfigModel.js +0 -43
  35. package/dist/createModel/createModel.d.ts +0 -4530
  36. package/dist/createModel/createModel.js +0 -117
  37. package/dist/createModel/createSessionModel.d.ts +0 -1845
  38. package/dist/createModel/createSessionModel.js +0 -115
  39. package/dist/createModel/index.d.ts +0 -3
  40. package/dist/createModel/index.js +0 -12
  41. package/dist/createViewState.d.ts +0 -11620
  42. package/dist/createViewState.js +0 -64
  43. package/dist/index.d.ts +0 -4
  44. package/dist/index.js +0 -14
  45. package/dist/loadPlugins.d.ts +0 -13
  46. package/dist/loadPlugins.js +0 -12
  47. package/dist/react-circular-genome-view.umd.production.min.js +0 -229
  48. package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +0 -135
  49. package/dist/react-circular-genome-view.umd.production.min.js.map +0 -1
  50. package/dist/types.d.ts +0 -5
  51. package/dist/types.js +0 -2
  52. package/dist/version.d.ts +0 -1
  53. package/dist/version.js +0 -4
  54. package/dist/webpack.d.ts +0 -7
  55. package/dist/webpack.js +0 -53
@@ -1,1845 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- import type { Instance } from 'mobx-state-tree';
3
- export default function sessionModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- name: import("mobx-state-tree").ISimpleType<string>;
6
- margin: import("mobx-state-tree").IType<number | undefined, number, number>;
7
- } & {
8
- drawerPosition: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
- drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
10
- widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
11
- activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
12
- minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
13
- } & {
14
- connectionInstances: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
15
- name: import("mobx-state-tree").ISimpleType<string>;
16
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
17
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
18
- name: {
19
- type: string;
20
- defaultValue: string;
21
- description: string;
22
- };
23
- assemblyNames: {
24
- type: string;
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- defaultValue: never[];
26
- description: string;
27
- };
28
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
29
- }, {
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- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
31
- } & {
32
- afterAttach(): void;
33
- addTrackConf(trackConf: Record<string, unknown> | ({
34
- [x: string]: any;
35
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
36
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
37
- [x: string]: any;
38
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
39
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
40
- [x: string]: any;
41
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
42
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
43
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
44
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
45
- [x: string]: any;
46
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
47
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
48
- [x: string]: any;
49
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
50
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
51
- [x: string]: any;
52
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
53
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
54
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
55
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
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- clear(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
58
- } & {
59
- view: import("mobx-state-tree").IAnyModelType;
60
- }, {
61
- selection: unknown;
62
- hovered: unknown;
63
- } & {
64
- readonly root: {
65
- jbrowse: any;
66
- session: any;
67
- sessionPath: string;
68
- assemblyManager: {
69
- assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
70
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
71
- }, {
72
- error: unknown;
73
- loadingP: Promise<void> | undefined;
74
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
75
- refNameAliases: {
76
- [x: string]: string;
77
- } | undefined;
78
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
79
- } & {
80
- getConf(arg: string): any;
81
- readonly lowerCaseRefNameAliases: {
82
- [k: string]: string;
83
- } | undefined;
84
- } & {
85
- readonly initialized: boolean;
86
- readonly name: string;
87
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
88
- readonly aliases: string[];
89
- readonly displayName: string;
90
- hasName(name: string): boolean;
91
- readonly allAliases: string[];
92
- readonly allRefNames: string[] | undefined;
93
- readonly lowerCaseRefNames: string[] | undefined;
94
- readonly allRefNamesWithLowerCase: string[] | undefined;
95
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
96
- readonly refNameColors: string[];
97
- } & {
98
- readonly refNames: string[] | undefined;
99
- } & {
100
- getCanonicalRefName(refName: string): string | undefined;
101
- getRefNameColor(refName: string): string | undefined;
102
- isValidRefName(refName: string): boolean;
103
- } & {
104
- setLoaded({ regions, refNameAliases, cytobands, }: {
105
- regions: import("@jbrowse/core/util/types").Region[];
106
- refNameAliases: {
107
- [x: string]: string;
108
- };
109
- cytobands: import("@jbrowse/core/util").Feature[];
110
- }): void;
111
- setError(e: unknown): void;
112
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
113
- setRefNameAliases(aliases: {
114
- [x: string]: string;
115
- }): void;
116
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
117
- setLoadingP(p?: Promise<void>): void;
118
- load(): Promise<void>;
119
- loadPre(): Promise<void>;
120
- } & {
121
- getAdapterMapEntry(adapterConf: {
122
- [x: string]: unknown;
123
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
124
- getRefNameMapForAdapter(adapterConf: {
125
- [x: string]: unknown;
126
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
127
- [x: string]: string;
128
- }>;
129
- getReverseRefNameMapForAdapter(adapterConf: {
130
- [x: string]: unknown;
131
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
132
- [x: string]: string;
133
- }>;
134
- afterCreate(): void;
135
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
136
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
137
- }, {
138
- error: unknown;
139
- loadingP: Promise<void> | undefined;
140
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
141
- refNameAliases: {
142
- [x: string]: string;
143
- } | undefined;
144
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
145
- } & {
146
- getConf(arg: string): any;
147
- readonly lowerCaseRefNameAliases: {
148
- [k: string]: string;
149
- } | undefined;
150
- } & {
151
- readonly initialized: boolean;
152
- readonly name: string;
153
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
154
- readonly aliases: string[];
155
- readonly displayName: string;
156
- hasName(name: string): boolean;
157
- readonly allAliases: string[];
158
- readonly allRefNames: string[] | undefined;
159
- readonly lowerCaseRefNames: string[] | undefined;
160
- readonly allRefNamesWithLowerCase: string[] | undefined;
161
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
162
- readonly refNameColors: string[];
163
- } & {
164
- readonly refNames: string[] | undefined;
165
- } & {
166
- getCanonicalRefName(refName: string): string | undefined;
167
- getRefNameColor(refName: string): string | undefined;
168
- isValidRefName(refName: string): boolean;
169
- } & {
170
- setLoaded({ regions, refNameAliases, cytobands, }: {
171
- regions: import("@jbrowse/core/util/types").Region[];
172
- refNameAliases: {
173
- [x: string]: string;
174
- };
175
- cytobands: import("@jbrowse/core/util").Feature[];
176
- }): void;
177
- setError(e: unknown): void;
178
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
179
- setRefNameAliases(aliases: {
180
- [x: string]: string;
181
- }): void;
182
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
183
- setLoadingP(p?: Promise<void>): void;
184
- load(): Promise<void>;
185
- loadPre(): Promise<void>;
186
- } & {
187
- getAdapterMapEntry(adapterConf: {
188
- [x: string]: unknown;
189
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
190
- getRefNameMapForAdapter(adapterConf: {
191
- [x: string]: unknown;
192
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
193
- [x: string]: string;
194
- }>;
195
- getReverseRefNameMapForAdapter(adapterConf: {
196
- [x: string]: unknown;
197
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
198
- [x: string]: string;
199
- }>;
200
- afterCreate(): void;
201
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
202
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
203
- readonly assemblyNameMap: Record<string, {
204
- configuration: any;
205
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
206
- error: unknown;
207
- loadingP: Promise<void> | undefined;
208
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
209
- refNameAliases: {
210
- [x: string]: string;
211
- } | undefined;
212
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
213
- } & {
214
- getConf(arg: string): any;
215
- readonly lowerCaseRefNameAliases: {
216
- [k: string]: string;
217
- } | undefined;
218
- } & {
219
- readonly initialized: boolean;
220
- readonly name: string;
221
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
222
- readonly aliases: string[];
223
- readonly displayName: string;
224
- hasName(name: string): boolean;
225
- readonly allAliases: string[];
226
- readonly allRefNames: string[] | undefined;
227
- readonly lowerCaseRefNames: string[] | undefined;
228
- readonly allRefNamesWithLowerCase: string[] | undefined;
229
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
230
- readonly refNameColors: string[];
231
- } & {
232
- readonly refNames: string[] | undefined;
233
- } & {
234
- getCanonicalRefName(refName: string): string | undefined;
235
- getRefNameColor(refName: string): string | undefined;
236
- isValidRefName(refName: string): boolean;
237
- } & {
238
- setLoaded({ regions, refNameAliases, cytobands, }: {
239
- regions: import("@jbrowse/core/util/types").Region[];
240
- refNameAliases: {
241
- [x: string]: string;
242
- };
243
- cytobands: import("@jbrowse/core/util").Feature[];
244
- }): void;
245
- setError(e: unknown): void;
246
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
247
- setRefNameAliases(aliases: {
248
- [x: string]: string;
249
- }): void;
250
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
251
- setLoadingP(p?: Promise<void>): void;
252
- load(): Promise<void>;
253
- loadPre(): Promise<void>;
254
- } & {
255
- getAdapterMapEntry(adapterConf: {
256
- [x: string]: unknown;
257
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
258
- getRefNameMapForAdapter(adapterConf: {
259
- [x: string]: unknown;
260
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
261
- [x: string]: string;
262
- }>;
263
- getReverseRefNameMapForAdapter(adapterConf: {
264
- [x: string]: unknown;
265
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
266
- [x: string]: string;
267
- }>;
268
- afterCreate(): void;
269
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
270
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
271
- }, {
272
- error: unknown;
273
- loadingP: Promise<void> | undefined;
274
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
275
- refNameAliases: {
276
- [x: string]: string;
277
- } | undefined;
278
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
279
- } & {
280
- getConf(arg: string): any;
281
- readonly lowerCaseRefNameAliases: {
282
- [k: string]: string;
283
- } | undefined;
284
- } & {
285
- readonly initialized: boolean;
286
- readonly name: string;
287
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
288
- readonly aliases: string[];
289
- readonly displayName: string;
290
- hasName(name: string): boolean;
291
- readonly allAliases: string[];
292
- readonly allRefNames: string[] | undefined;
293
- readonly lowerCaseRefNames: string[] | undefined;
294
- readonly allRefNamesWithLowerCase: string[] | undefined;
295
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
296
- readonly refNameColors: string[];
297
- } & {
298
- readonly refNames: string[] | undefined;
299
- } & {
300
- getCanonicalRefName(refName: string): string | undefined;
301
- getRefNameColor(refName: string): string | undefined;
302
- isValidRefName(refName: string): boolean;
303
- } & {
304
- setLoaded({ regions, refNameAliases, cytobands, }: {
305
- regions: import("@jbrowse/core/util/types").Region[];
306
- refNameAliases: {
307
- [x: string]: string;
308
- };
309
- cytobands: import("@jbrowse/core/util").Feature[];
310
- }): void;
311
- setError(e: unknown): void;
312
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
313
- setRefNameAliases(aliases: {
314
- [x: string]: string;
315
- }): void;
316
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
317
- setLoadingP(p?: Promise<void>): void;
318
- load(): Promise<void>;
319
- loadPre(): Promise<void>;
320
- } & {
321
- getAdapterMapEntry(adapterConf: {
322
- [x: string]: unknown;
323
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
324
- getRefNameMapForAdapter(adapterConf: {
325
- [x: string]: unknown;
326
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
327
- [x: string]: string;
328
- }>;
329
- getReverseRefNameMapForAdapter(adapterConf: {
330
- [x: string]: unknown;
331
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
332
- [x: string]: string;
333
- }>;
334
- afterCreate(): void;
335
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
336
- } & {
337
- getCanonicalAssemblyName(asmName: string): string | undefined;
338
- get(asmName: string): ({
339
- configuration: any;
340
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
341
- error: unknown;
342
- loadingP: Promise<void> | undefined;
343
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
344
- refNameAliases: {
345
- [x: string]: string;
346
- } | undefined;
347
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
348
- } & {
349
- getConf(arg: string): any;
350
- readonly lowerCaseRefNameAliases: {
351
- [k: string]: string;
352
- } | undefined;
353
- } & {
354
- readonly initialized: boolean;
355
- readonly name: string;
356
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
357
- readonly aliases: string[];
358
- readonly displayName: string;
359
- hasName(name: string): boolean;
360
- readonly allAliases: string[];
361
- readonly allRefNames: string[] | undefined;
362
- readonly lowerCaseRefNames: string[] | undefined;
363
- readonly allRefNamesWithLowerCase: string[] | undefined;
364
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
365
- readonly refNameColors: string[];
366
- } & {
367
- readonly refNames: string[] | undefined;
368
- } & {
369
- getCanonicalRefName(refName: string): string | undefined;
370
- getRefNameColor(refName: string): string | undefined;
371
- isValidRefName(refName: string): boolean;
372
- } & {
373
- setLoaded({ regions, refNameAliases, cytobands, }: {
374
- regions: import("@jbrowse/core/util/types").Region[];
375
- refNameAliases: {
376
- [x: string]: string;
377
- };
378
- cytobands: import("@jbrowse/core/util").Feature[];
379
- }): void;
380
- setError(e: unknown): void;
381
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
382
- setRefNameAliases(aliases: {
383
- [x: string]: string;
384
- }): void;
385
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
386
- setLoadingP(p?: Promise<void>): void;
387
- load(): Promise<void>;
388
- loadPre(): Promise<void>;
389
- } & {
390
- getAdapterMapEntry(adapterConf: {
391
- [x: string]: unknown;
392
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
393
- getRefNameMapForAdapter(adapterConf: {
394
- [x: string]: unknown;
395
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
396
- [x: string]: string;
397
- }>;
398
- getReverseRefNameMapForAdapter(adapterConf: {
399
- [x: string]: unknown;
400
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
401
- [x: string]: string;
402
- }>;
403
- afterCreate(): void;
404
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
405
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
406
- }, {
407
- error: unknown;
408
- loadingP: Promise<void> | undefined;
409
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
410
- refNameAliases: {
411
- [x: string]: string;
412
- } | undefined;
413
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
414
- } & {
415
- getConf(arg: string): any;
416
- readonly lowerCaseRefNameAliases: {
417
- [k: string]: string;
418
- } | undefined;
419
- } & {
420
- readonly initialized: boolean;
421
- readonly name: string;
422
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
423
- readonly aliases: string[];
424
- readonly displayName: string;
425
- hasName(name: string): boolean;
426
- readonly allAliases: string[];
427
- readonly allRefNames: string[] | undefined;
428
- readonly lowerCaseRefNames: string[] | undefined;
429
- readonly allRefNamesWithLowerCase: string[] | undefined;
430
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
431
- readonly refNameColors: string[];
432
- } & {
433
- readonly refNames: string[] | undefined;
434
- } & {
435
- getCanonicalRefName(refName: string): string | undefined;
436
- getRefNameColor(refName: string): string | undefined;
437
- isValidRefName(refName: string): boolean;
438
- } & {
439
- setLoaded({ regions, refNameAliases, cytobands, }: {
440
- regions: import("@jbrowse/core/util/types").Region[];
441
- refNameAliases: {
442
- [x: string]: string;
443
- };
444
- cytobands: import("@jbrowse/core/util").Feature[];
445
- }): void;
446
- setError(e: unknown): void;
447
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
448
- setRefNameAliases(aliases: {
449
- [x: string]: string;
450
- }): void;
451
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
452
- setLoadingP(p?: Promise<void>): void;
453
- load(): Promise<void>;
454
- loadPre(): Promise<void>;
455
- } & {
456
- getAdapterMapEntry(adapterConf: {
457
- [x: string]: unknown;
458
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
459
- getRefNameMapForAdapter(adapterConf: {
460
- [x: string]: unknown;
461
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
462
- [x: string]: string;
463
- }>;
464
- getReverseRefNameMapForAdapter(adapterConf: {
465
- [x: string]: unknown;
466
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
467
- [x: string]: string;
468
- }>;
469
- afterCreate(): void;
470
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
471
- readonly assemblyNamesList: any[];
472
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
473
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
474
- } & {
475
- waitForAssembly(assemblyName: string): Promise<({
476
- configuration: any;
477
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
478
- error: unknown;
479
- loadingP: Promise<void> | undefined;
480
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
481
- refNameAliases: {
482
- [x: string]: string;
483
- } | undefined;
484
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
485
- } & {
486
- getConf(arg: string): any;
487
- readonly lowerCaseRefNameAliases: {
488
- [k: string]: string;
489
- } | undefined;
490
- } & {
491
- readonly initialized: boolean;
492
- readonly name: string;
493
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
494
- readonly aliases: string[];
495
- readonly displayName: string;
496
- hasName(name: string): boolean;
497
- readonly allAliases: string[];
498
- readonly allRefNames: string[] | undefined;
499
- readonly lowerCaseRefNames: string[] | undefined;
500
- readonly allRefNamesWithLowerCase: string[] | undefined;
501
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
502
- readonly refNameColors: string[];
503
- } & {
504
- readonly refNames: string[] | undefined;
505
- } & {
506
- getCanonicalRefName(refName: string): string | undefined;
507
- getRefNameColor(refName: string): string | undefined;
508
- isValidRefName(refName: string): boolean;
509
- } & {
510
- setLoaded({ regions, refNameAliases, cytobands, }: {
511
- regions: import("@jbrowse/core/util/types").Region[];
512
- refNameAliases: {
513
- [x: string]: string;
514
- };
515
- cytobands: import("@jbrowse/core/util").Feature[];
516
- }): void;
517
- setError(e: unknown): void;
518
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
519
- setRefNameAliases(aliases: {
520
- [x: string]: string;
521
- }): void;
522
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
523
- setLoadingP(p?: Promise<void>): void;
524
- load(): Promise<void>;
525
- loadPre(): Promise<void>;
526
- } & {
527
- getAdapterMapEntry(adapterConf: {
528
- [x: string]: unknown;
529
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
530
- getRefNameMapForAdapter(adapterConf: {
531
- [x: string]: unknown;
532
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
533
- [x: string]: string;
534
- }>;
535
- getReverseRefNameMapForAdapter(adapterConf: {
536
- [x: string]: unknown;
537
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
538
- [x: string]: string;
539
- }>;
540
- afterCreate(): void;
541
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
542
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
543
- }, {
544
- error: unknown;
545
- loadingP: Promise<void> | undefined;
546
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
547
- refNameAliases: {
548
- [x: string]: string;
549
- } | undefined;
550
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
551
- } & {
552
- getConf(arg: string): any;
553
- readonly lowerCaseRefNameAliases: {
554
- [k: string]: string;
555
- } | undefined;
556
- } & {
557
- readonly initialized: boolean;
558
- readonly name: string;
559
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
560
- readonly aliases: string[];
561
- readonly displayName: string;
562
- hasName(name: string): boolean;
563
- readonly allAliases: string[];
564
- readonly allRefNames: string[] | undefined;
565
- readonly lowerCaseRefNames: string[] | undefined;
566
- readonly allRefNamesWithLowerCase: string[] | undefined;
567
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
568
- readonly refNameColors: string[];
569
- } & {
570
- readonly refNames: string[] | undefined;
571
- } & {
572
- getCanonicalRefName(refName: string): string | undefined;
573
- getRefNameColor(refName: string): string | undefined;
574
- isValidRefName(refName: string): boolean;
575
- } & {
576
- setLoaded({ regions, refNameAliases, cytobands, }: {
577
- regions: import("@jbrowse/core/util/types").Region[];
578
- refNameAliases: {
579
- [x: string]: string;
580
- };
581
- cytobands: import("@jbrowse/core/util").Feature[];
582
- }): void;
583
- setError(e: unknown): void;
584
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
585
- setRefNameAliases(aliases: {
586
- [x: string]: string;
587
- }): void;
588
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
589
- setLoadingP(p?: Promise<void>): void;
590
- load(): Promise<void>;
591
- loadPre(): Promise<void>;
592
- } & {
593
- getAdapterMapEntry(adapterConf: {
594
- [x: string]: unknown;
595
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
596
- getRefNameMapForAdapter(adapterConf: {
597
- [x: string]: unknown;
598
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
599
- [x: string]: string;
600
- }>;
601
- getReverseRefNameMapForAdapter(adapterConf: {
602
- [x: string]: unknown;
603
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
604
- [x: string]: string;
605
- }>;
606
- afterCreate(): void;
607
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
608
- getRefNameMapForAdapter(adapterConf: {
609
- [x: string]: unknown;
610
- }, assemblyName: string | undefined, opts: {
611
- stopToken?: string;
612
- sessionId: string;
613
- }): Promise<{
614
- [x: string]: string;
615
- } | undefined>;
616
- getReverseRefNameMapForAdapter(adapterConf: {
617
- [x: string]: unknown;
618
- }, assemblyName: string | undefined, opts: {
619
- stopToken?: string;
620
- sessionId: string;
621
- }): Promise<{
622
- [x: string]: string;
623
- } | undefined>;
624
- isValidRefName(refName: string, assemblyName: string): boolean;
625
- } & {
626
- afterAttach(): void;
627
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
628
- addAssembly(configuration: any): void;
629
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
630
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
631
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
632
- }, {
633
- error: unknown;
634
- loadingP: Promise<void> | undefined;
635
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
636
- refNameAliases: {
637
- [x: string]: string;
638
- } | undefined;
639
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
640
- } & {
641
- getConf(arg: string): any;
642
- readonly lowerCaseRefNameAliases: {
643
- [k: string]: string;
644
- } | undefined;
645
- } & {
646
- readonly initialized: boolean;
647
- readonly name: string;
648
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
649
- readonly aliases: string[];
650
- readonly displayName: string;
651
- hasName(name: string): boolean;
652
- readonly allAliases: string[];
653
- readonly allRefNames: string[] | undefined;
654
- readonly lowerCaseRefNames: string[] | undefined;
655
- readonly allRefNamesWithLowerCase: string[] | undefined;
656
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
657
- readonly refNameColors: string[];
658
- } & {
659
- readonly refNames: string[] | undefined;
660
- } & {
661
- getCanonicalRefName(refName: string): string | undefined;
662
- getRefNameColor(refName: string): string | undefined;
663
- isValidRefName(refName: string): boolean;
664
- } & {
665
- setLoaded({ regions, refNameAliases, cytobands, }: {
666
- regions: import("@jbrowse/core/util/types").Region[];
667
- refNameAliases: {
668
- [x: string]: string;
669
- };
670
- cytobands: import("@jbrowse/core/util").Feature[];
671
- }): void;
672
- setError(e: unknown): void;
673
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
674
- setRefNameAliases(aliases: {
675
- [x: string]: string;
676
- }): void;
677
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
678
- setLoadingP(p?: Promise<void>): void;
679
- load(): Promise<void>;
680
- loadPre(): Promise<void>;
681
- } & {
682
- getAdapterMapEntry(adapterConf: {
683
- [x: string]: unknown;
684
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
685
- getRefNameMapForAdapter(adapterConf: {
686
- [x: string]: unknown;
687
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
688
- [x: string]: string;
689
- }>;
690
- getReverseRefNameMapForAdapter(adapterConf: {
691
- [x: string]: unknown;
692
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
693
- [x: string]: string;
694
- }>;
695
- afterCreate(): void;
696
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
697
- }, {
698
- readonly assemblyNameMap: Record<string, {
699
- configuration: any;
700
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
701
- error: unknown;
702
- loadingP: Promise<void> | undefined;
703
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
704
- refNameAliases: {
705
- [x: string]: string;
706
- } | undefined;
707
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
708
- } & {
709
- getConf(arg: string): any;
710
- readonly lowerCaseRefNameAliases: {
711
- [k: string]: string;
712
- } | undefined;
713
- } & {
714
- readonly initialized: boolean;
715
- readonly name: string;
716
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
717
- readonly aliases: string[];
718
- readonly displayName: string;
719
- hasName(name: string): boolean;
720
- readonly allAliases: string[];
721
- readonly allRefNames: string[] | undefined;
722
- readonly lowerCaseRefNames: string[] | undefined;
723
- readonly allRefNamesWithLowerCase: string[] | undefined;
724
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
725
- readonly refNameColors: string[];
726
- } & {
727
- readonly refNames: string[] | undefined;
728
- } & {
729
- getCanonicalRefName(refName: string): string | undefined;
730
- getRefNameColor(refName: string): string | undefined;
731
- isValidRefName(refName: string): boolean;
732
- } & {
733
- setLoaded({ regions, refNameAliases, cytobands, }: {
734
- regions: import("@jbrowse/core/util/types").Region[];
735
- refNameAliases: {
736
- [x: string]: string;
737
- };
738
- cytobands: import("@jbrowse/core/util").Feature[];
739
- }): void;
740
- setError(e: unknown): void;
741
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
742
- setRefNameAliases(aliases: {
743
- [x: string]: string;
744
- }): void;
745
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
746
- setLoadingP(p?: Promise<void>): void;
747
- load(): Promise<void>;
748
- loadPre(): Promise<void>;
749
- } & {
750
- getAdapterMapEntry(adapterConf: {
751
- [x: string]: unknown;
752
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
753
- getRefNameMapForAdapter(adapterConf: {
754
- [x: string]: unknown;
755
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
756
- [x: string]: string;
757
- }>;
758
- getReverseRefNameMapForAdapter(adapterConf: {
759
- [x: string]: unknown;
760
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
761
- [x: string]: string;
762
- }>;
763
- afterCreate(): void;
764
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
765
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
766
- }, {
767
- error: unknown;
768
- loadingP: Promise<void> | undefined;
769
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
770
- refNameAliases: {
771
- [x: string]: string;
772
- } | undefined;
773
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
774
- } & {
775
- getConf(arg: string): any;
776
- readonly lowerCaseRefNameAliases: {
777
- [k: string]: string;
778
- } | undefined;
779
- } & {
780
- readonly initialized: boolean;
781
- readonly name: string;
782
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
783
- readonly aliases: string[];
784
- readonly displayName: string;
785
- hasName(name: string): boolean;
786
- readonly allAliases: string[];
787
- readonly allRefNames: string[] | undefined;
788
- readonly lowerCaseRefNames: string[] | undefined;
789
- readonly allRefNamesWithLowerCase: string[] | undefined;
790
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
791
- readonly refNameColors: string[];
792
- } & {
793
- readonly refNames: string[] | undefined;
794
- } & {
795
- getCanonicalRefName(refName: string): string | undefined;
796
- getRefNameColor(refName: string): string | undefined;
797
- isValidRefName(refName: string): boolean;
798
- } & {
799
- setLoaded({ regions, refNameAliases, cytobands, }: {
800
- regions: import("@jbrowse/core/util/types").Region[];
801
- refNameAliases: {
802
- [x: string]: string;
803
- };
804
- cytobands: import("@jbrowse/core/util").Feature[];
805
- }): void;
806
- setError(e: unknown): void;
807
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
808
- setRefNameAliases(aliases: {
809
- [x: string]: string;
810
- }): void;
811
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
812
- setLoadingP(p?: Promise<void>): void;
813
- load(): Promise<void>;
814
- loadPre(): Promise<void>;
815
- } & {
816
- getAdapterMapEntry(adapterConf: {
817
- [x: string]: unknown;
818
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
819
- getRefNameMapForAdapter(adapterConf: {
820
- [x: string]: unknown;
821
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
822
- [x: string]: string;
823
- }>;
824
- getReverseRefNameMapForAdapter(adapterConf: {
825
- [x: string]: unknown;
826
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
827
- [x: string]: string;
828
- }>;
829
- afterCreate(): void;
830
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
831
- } & {
832
- getCanonicalAssemblyName(asmName: string): string | undefined;
833
- get(asmName: string): ({
834
- configuration: any;
835
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
836
- error: unknown;
837
- loadingP: Promise<void> | undefined;
838
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
839
- refNameAliases: {
840
- [x: string]: string;
841
- } | undefined;
842
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
843
- } & {
844
- getConf(arg: string): any;
845
- readonly lowerCaseRefNameAliases: {
846
- [k: string]: string;
847
- } | undefined;
848
- } & {
849
- readonly initialized: boolean;
850
- readonly name: string;
851
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
852
- readonly aliases: string[];
853
- readonly displayName: string;
854
- hasName(name: string): boolean;
855
- readonly allAliases: string[];
856
- readonly allRefNames: string[] | undefined;
857
- readonly lowerCaseRefNames: string[] | undefined;
858
- readonly allRefNamesWithLowerCase: string[] | undefined;
859
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
860
- readonly refNameColors: string[];
861
- } & {
862
- readonly refNames: string[] | undefined;
863
- } & {
864
- getCanonicalRefName(refName: string): string | undefined;
865
- getRefNameColor(refName: string): string | undefined;
866
- isValidRefName(refName: string): boolean;
867
- } & {
868
- setLoaded({ regions, refNameAliases, cytobands, }: {
869
- regions: import("@jbrowse/core/util/types").Region[];
870
- refNameAliases: {
871
- [x: string]: string;
872
- };
873
- cytobands: import("@jbrowse/core/util").Feature[];
874
- }): void;
875
- setError(e: unknown): void;
876
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
877
- setRefNameAliases(aliases: {
878
- [x: string]: string;
879
- }): void;
880
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
881
- setLoadingP(p?: Promise<void>): void;
882
- load(): Promise<void>;
883
- loadPre(): Promise<void>;
884
- } & {
885
- getAdapterMapEntry(adapterConf: {
886
- [x: string]: unknown;
887
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
888
- getRefNameMapForAdapter(adapterConf: {
889
- [x: string]: unknown;
890
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
891
- [x: string]: string;
892
- }>;
893
- getReverseRefNameMapForAdapter(adapterConf: {
894
- [x: string]: unknown;
895
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
896
- [x: string]: string;
897
- }>;
898
- afterCreate(): void;
899
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
900
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
901
- }, {
902
- error: unknown;
903
- loadingP: Promise<void> | undefined;
904
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
905
- refNameAliases: {
906
- [x: string]: string;
907
- } | undefined;
908
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
909
- } & {
910
- getConf(arg: string): any;
911
- readonly lowerCaseRefNameAliases: {
912
- [k: string]: string;
913
- } | undefined;
914
- } & {
915
- readonly initialized: boolean;
916
- readonly name: string;
917
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
918
- readonly aliases: string[];
919
- readonly displayName: string;
920
- hasName(name: string): boolean;
921
- readonly allAliases: string[];
922
- readonly allRefNames: string[] | undefined;
923
- readonly lowerCaseRefNames: string[] | undefined;
924
- readonly allRefNamesWithLowerCase: string[] | undefined;
925
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
926
- readonly refNameColors: string[];
927
- } & {
928
- readonly refNames: string[] | undefined;
929
- } & {
930
- getCanonicalRefName(refName: string): string | undefined;
931
- getRefNameColor(refName: string): string | undefined;
932
- isValidRefName(refName: string): boolean;
933
- } & {
934
- setLoaded({ regions, refNameAliases, cytobands, }: {
935
- regions: import("@jbrowse/core/util/types").Region[];
936
- refNameAliases: {
937
- [x: string]: string;
938
- };
939
- cytobands: import("@jbrowse/core/util").Feature[];
940
- }): void;
941
- setError(e: unknown): void;
942
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
943
- setRefNameAliases(aliases: {
944
- [x: string]: string;
945
- }): void;
946
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
947
- setLoadingP(p?: Promise<void>): void;
948
- load(): Promise<void>;
949
- loadPre(): Promise<void>;
950
- } & {
951
- getAdapterMapEntry(adapterConf: {
952
- [x: string]: unknown;
953
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
954
- getRefNameMapForAdapter(adapterConf: {
955
- [x: string]: unknown;
956
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
957
- [x: string]: string;
958
- }>;
959
- getReverseRefNameMapForAdapter(adapterConf: {
960
- [x: string]: unknown;
961
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
962
- [x: string]: string;
963
- }>;
964
- afterCreate(): void;
965
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
966
- readonly assemblyNamesList: any[];
967
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
968
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
969
- } & {
970
- waitForAssembly(assemblyName: string): Promise<({
971
- configuration: any;
972
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
973
- error: unknown;
974
- loadingP: Promise<void> | undefined;
975
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
976
- refNameAliases: {
977
- [x: string]: string;
978
- } | undefined;
979
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
980
- } & {
981
- getConf(arg: string): any;
982
- readonly lowerCaseRefNameAliases: {
983
- [k: string]: string;
984
- } | undefined;
985
- } & {
986
- readonly initialized: boolean;
987
- readonly name: string;
988
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
989
- readonly aliases: string[];
990
- readonly displayName: string;
991
- hasName(name: string): boolean;
992
- readonly allAliases: string[];
993
- readonly allRefNames: string[] | undefined;
994
- readonly lowerCaseRefNames: string[] | undefined;
995
- readonly allRefNamesWithLowerCase: string[] | undefined;
996
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
997
- readonly refNameColors: string[];
998
- } & {
999
- readonly refNames: string[] | undefined;
1000
- } & {
1001
- getCanonicalRefName(refName: string): string | undefined;
1002
- getRefNameColor(refName: string): string | undefined;
1003
- isValidRefName(refName: string): boolean;
1004
- } & {
1005
- setLoaded({ regions, refNameAliases, cytobands, }: {
1006
- regions: import("@jbrowse/core/util/types").Region[];
1007
- refNameAliases: {
1008
- [x: string]: string;
1009
- };
1010
- cytobands: import("@jbrowse/core/util").Feature[];
1011
- }): void;
1012
- setError(e: unknown): void;
1013
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1014
- setRefNameAliases(aliases: {
1015
- [x: string]: string;
1016
- }): void;
1017
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1018
- setLoadingP(p?: Promise<void>): void;
1019
- load(): Promise<void>;
1020
- loadPre(): Promise<void>;
1021
- } & {
1022
- getAdapterMapEntry(adapterConf: {
1023
- [x: string]: unknown;
1024
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1025
- getRefNameMapForAdapter(adapterConf: {
1026
- [x: string]: unknown;
1027
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1028
- [x: string]: string;
1029
- }>;
1030
- getReverseRefNameMapForAdapter(adapterConf: {
1031
- [x: string]: unknown;
1032
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1033
- [x: string]: string;
1034
- }>;
1035
- afterCreate(): void;
1036
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1037
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1038
- }, {
1039
- error: unknown;
1040
- loadingP: Promise<void> | undefined;
1041
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1042
- refNameAliases: {
1043
- [x: string]: string;
1044
- } | undefined;
1045
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1046
- } & {
1047
- getConf(arg: string): any;
1048
- readonly lowerCaseRefNameAliases: {
1049
- [k: string]: string;
1050
- } | undefined;
1051
- } & {
1052
- readonly initialized: boolean;
1053
- readonly name: string;
1054
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1055
- readonly aliases: string[];
1056
- readonly displayName: string;
1057
- hasName(name: string): boolean;
1058
- readonly allAliases: string[];
1059
- readonly allRefNames: string[] | undefined;
1060
- readonly lowerCaseRefNames: string[] | undefined;
1061
- readonly allRefNamesWithLowerCase: string[] | undefined;
1062
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1063
- readonly refNameColors: string[];
1064
- } & {
1065
- readonly refNames: string[] | undefined;
1066
- } & {
1067
- getCanonicalRefName(refName: string): string | undefined;
1068
- getRefNameColor(refName: string): string | undefined;
1069
- isValidRefName(refName: string): boolean;
1070
- } & {
1071
- setLoaded({ regions, refNameAliases, cytobands, }: {
1072
- regions: import("@jbrowse/core/util/types").Region[];
1073
- refNameAliases: {
1074
- [x: string]: string;
1075
- };
1076
- cytobands: import("@jbrowse/core/util").Feature[];
1077
- }): void;
1078
- setError(e: unknown): void;
1079
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1080
- setRefNameAliases(aliases: {
1081
- [x: string]: string;
1082
- }): void;
1083
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1084
- setLoadingP(p?: Promise<void>): void;
1085
- load(): Promise<void>;
1086
- loadPre(): Promise<void>;
1087
- } & {
1088
- getAdapterMapEntry(adapterConf: {
1089
- [x: string]: unknown;
1090
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1091
- getRefNameMapForAdapter(adapterConf: {
1092
- [x: string]: unknown;
1093
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1094
- [x: string]: string;
1095
- }>;
1096
- getReverseRefNameMapForAdapter(adapterConf: {
1097
- [x: string]: unknown;
1098
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1099
- [x: string]: string;
1100
- }>;
1101
- afterCreate(): void;
1102
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1103
- getRefNameMapForAdapter(adapterConf: {
1104
- [x: string]: unknown;
1105
- }, assemblyName: string | undefined, opts: {
1106
- stopToken?: string;
1107
- sessionId: string;
1108
- }): Promise<{
1109
- [x: string]: string;
1110
- } | undefined>;
1111
- getReverseRefNameMapForAdapter(adapterConf: {
1112
- [x: string]: unknown;
1113
- }, assemblyName: string | undefined, opts: {
1114
- stopToken?: string;
1115
- sessionId: string;
1116
- }): Promise<{
1117
- [x: string]: string;
1118
- } | undefined>;
1119
- isValidRefName(refName: string, assemblyName: string): boolean;
1120
- } & {
1121
- afterAttach(): void;
1122
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1123
- addAssembly(configuration: any): void;
1124
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
1125
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1126
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1127
- adminMode: boolean;
1128
- error: unknown;
1129
- textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1130
- pluginManager: PluginManager;
1131
- } & {
1132
- setError(error: unknown): void;
1133
- setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
1134
- setDefaultSession(): void;
1135
- setSessionPath(path: string): void;
1136
- renameCurrentSession(newName: string): void;
1137
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1138
- jbrowse: import("mobx-state-tree").IAnyType;
1139
- session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
1140
- sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
1141
- assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
1142
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
1143
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1144
- }, {
1145
- error: unknown;
1146
- loadingP: Promise<void> | undefined;
1147
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1148
- refNameAliases: {
1149
- [x: string]: string;
1150
- } | undefined;
1151
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1152
- } & {
1153
- getConf(arg: string): any;
1154
- readonly lowerCaseRefNameAliases: {
1155
- [k: string]: string;
1156
- } | undefined;
1157
- } & {
1158
- readonly initialized: boolean;
1159
- readonly name: string;
1160
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1161
- readonly aliases: string[];
1162
- readonly displayName: string;
1163
- hasName(name: string): boolean;
1164
- readonly allAliases: string[];
1165
- readonly allRefNames: string[] | undefined;
1166
- readonly lowerCaseRefNames: string[] | undefined;
1167
- readonly allRefNamesWithLowerCase: string[] | undefined;
1168
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1169
- readonly refNameColors: string[];
1170
- } & {
1171
- readonly refNames: string[] | undefined;
1172
- } & {
1173
- getCanonicalRefName(refName: string): string | undefined;
1174
- getRefNameColor(refName: string): string | undefined;
1175
- isValidRefName(refName: string): boolean;
1176
- } & {
1177
- setLoaded({ regions, refNameAliases, cytobands, }: {
1178
- regions: import("@jbrowse/core/util/types").Region[];
1179
- refNameAliases: {
1180
- [x: string]: string;
1181
- };
1182
- cytobands: import("@jbrowse/core/util").Feature[];
1183
- }): void;
1184
- setError(e: unknown): void;
1185
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1186
- setRefNameAliases(aliases: {
1187
- [x: string]: string;
1188
- }): void;
1189
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1190
- setLoadingP(p?: Promise<void>): void;
1191
- load(): Promise<void>;
1192
- loadPre(): Promise<void>;
1193
- } & {
1194
- getAdapterMapEntry(adapterConf: {
1195
- [x: string]: unknown;
1196
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1197
- getRefNameMapForAdapter(adapterConf: {
1198
- [x: string]: unknown;
1199
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1200
- [x: string]: string;
1201
- }>;
1202
- getReverseRefNameMapForAdapter(adapterConf: {
1203
- [x: string]: unknown;
1204
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1205
- [x: string]: string;
1206
- }>;
1207
- afterCreate(): void;
1208
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1209
- }, {
1210
- readonly assemblyNameMap: Record<string, {
1211
- configuration: any;
1212
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1213
- error: unknown;
1214
- loadingP: Promise<void> | undefined;
1215
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1216
- refNameAliases: {
1217
- [x: string]: string;
1218
- } | undefined;
1219
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1220
- } & {
1221
- getConf(arg: string): any;
1222
- readonly lowerCaseRefNameAliases: {
1223
- [k: string]: string;
1224
- } | undefined;
1225
- } & {
1226
- readonly initialized: boolean;
1227
- readonly name: string;
1228
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1229
- readonly aliases: string[];
1230
- readonly displayName: string;
1231
- hasName(name: string): boolean;
1232
- readonly allAliases: string[];
1233
- readonly allRefNames: string[] | undefined;
1234
- readonly lowerCaseRefNames: string[] | undefined;
1235
- readonly allRefNamesWithLowerCase: string[] | undefined;
1236
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1237
- readonly refNameColors: string[];
1238
- } & {
1239
- readonly refNames: string[] | undefined;
1240
- } & {
1241
- getCanonicalRefName(refName: string): string | undefined;
1242
- getRefNameColor(refName: string): string | undefined;
1243
- isValidRefName(refName: string): boolean;
1244
- } & {
1245
- setLoaded({ regions, refNameAliases, cytobands, }: {
1246
- regions: import("@jbrowse/core/util/types").Region[];
1247
- refNameAliases: {
1248
- [x: string]: string;
1249
- };
1250
- cytobands: import("@jbrowse/core/util").Feature[];
1251
- }): void;
1252
- setError(e: unknown): void;
1253
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1254
- setRefNameAliases(aliases: {
1255
- [x: string]: string;
1256
- }): void;
1257
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1258
- setLoadingP(p?: Promise<void>): void;
1259
- load(): Promise<void>;
1260
- loadPre(): Promise<void>;
1261
- } & {
1262
- getAdapterMapEntry(adapterConf: {
1263
- [x: string]: unknown;
1264
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1265
- getRefNameMapForAdapter(adapterConf: {
1266
- [x: string]: unknown;
1267
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1268
- [x: string]: string;
1269
- }>;
1270
- getReverseRefNameMapForAdapter(adapterConf: {
1271
- [x: string]: unknown;
1272
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1273
- [x: string]: string;
1274
- }>;
1275
- afterCreate(): void;
1276
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1277
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1278
- }, {
1279
- error: unknown;
1280
- loadingP: Promise<void> | undefined;
1281
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1282
- refNameAliases: {
1283
- [x: string]: string;
1284
- } | undefined;
1285
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1286
- } & {
1287
- getConf(arg: string): any;
1288
- readonly lowerCaseRefNameAliases: {
1289
- [k: string]: string;
1290
- } | undefined;
1291
- } & {
1292
- readonly initialized: boolean;
1293
- readonly name: string;
1294
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1295
- readonly aliases: string[];
1296
- readonly displayName: string;
1297
- hasName(name: string): boolean;
1298
- readonly allAliases: string[];
1299
- readonly allRefNames: string[] | undefined;
1300
- readonly lowerCaseRefNames: string[] | undefined;
1301
- readonly allRefNamesWithLowerCase: string[] | undefined;
1302
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1303
- readonly refNameColors: string[];
1304
- } & {
1305
- readonly refNames: string[] | undefined;
1306
- } & {
1307
- getCanonicalRefName(refName: string): string | undefined;
1308
- getRefNameColor(refName: string): string | undefined;
1309
- isValidRefName(refName: string): boolean;
1310
- } & {
1311
- setLoaded({ regions, refNameAliases, cytobands, }: {
1312
- regions: import("@jbrowse/core/util/types").Region[];
1313
- refNameAliases: {
1314
- [x: string]: string;
1315
- };
1316
- cytobands: import("@jbrowse/core/util").Feature[];
1317
- }): void;
1318
- setError(e: unknown): void;
1319
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1320
- setRefNameAliases(aliases: {
1321
- [x: string]: string;
1322
- }): void;
1323
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1324
- setLoadingP(p?: Promise<void>): void;
1325
- load(): Promise<void>;
1326
- loadPre(): Promise<void>;
1327
- } & {
1328
- getAdapterMapEntry(adapterConf: {
1329
- [x: string]: unknown;
1330
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1331
- getRefNameMapForAdapter(adapterConf: {
1332
- [x: string]: unknown;
1333
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1334
- [x: string]: string;
1335
- }>;
1336
- getReverseRefNameMapForAdapter(adapterConf: {
1337
- [x: string]: unknown;
1338
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1339
- [x: string]: string;
1340
- }>;
1341
- afterCreate(): void;
1342
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1343
- } & {
1344
- getCanonicalAssemblyName(asmName: string): string | undefined;
1345
- get(asmName: string): ({
1346
- configuration: any;
1347
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1348
- error: unknown;
1349
- loadingP: Promise<void> | undefined;
1350
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1351
- refNameAliases: {
1352
- [x: string]: string;
1353
- } | undefined;
1354
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1355
- } & {
1356
- getConf(arg: string): any;
1357
- readonly lowerCaseRefNameAliases: {
1358
- [k: string]: string;
1359
- } | undefined;
1360
- } & {
1361
- readonly initialized: boolean;
1362
- readonly name: string;
1363
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1364
- readonly aliases: string[];
1365
- readonly displayName: string;
1366
- hasName(name: string): boolean;
1367
- readonly allAliases: string[];
1368
- readonly allRefNames: string[] | undefined;
1369
- readonly lowerCaseRefNames: string[] | undefined;
1370
- readonly allRefNamesWithLowerCase: string[] | undefined;
1371
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1372
- readonly refNameColors: string[];
1373
- } & {
1374
- readonly refNames: string[] | undefined;
1375
- } & {
1376
- getCanonicalRefName(refName: string): string | undefined;
1377
- getRefNameColor(refName: string): string | undefined;
1378
- isValidRefName(refName: string): boolean;
1379
- } & {
1380
- setLoaded({ regions, refNameAliases, cytobands, }: {
1381
- regions: import("@jbrowse/core/util/types").Region[];
1382
- refNameAliases: {
1383
- [x: string]: string;
1384
- };
1385
- cytobands: import("@jbrowse/core/util").Feature[];
1386
- }): void;
1387
- setError(e: unknown): void;
1388
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1389
- setRefNameAliases(aliases: {
1390
- [x: string]: string;
1391
- }): void;
1392
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1393
- setLoadingP(p?: Promise<void>): void;
1394
- load(): Promise<void>;
1395
- loadPre(): Promise<void>;
1396
- } & {
1397
- getAdapterMapEntry(adapterConf: {
1398
- [x: string]: unknown;
1399
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1400
- getRefNameMapForAdapter(adapterConf: {
1401
- [x: string]: unknown;
1402
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1403
- [x: string]: string;
1404
- }>;
1405
- getReverseRefNameMapForAdapter(adapterConf: {
1406
- [x: string]: unknown;
1407
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1408
- [x: string]: string;
1409
- }>;
1410
- afterCreate(): void;
1411
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1412
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1413
- }, {
1414
- error: unknown;
1415
- loadingP: Promise<void> | undefined;
1416
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1417
- refNameAliases: {
1418
- [x: string]: string;
1419
- } | undefined;
1420
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1421
- } & {
1422
- getConf(arg: string): any;
1423
- readonly lowerCaseRefNameAliases: {
1424
- [k: string]: string;
1425
- } | undefined;
1426
- } & {
1427
- readonly initialized: boolean;
1428
- readonly name: string;
1429
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1430
- readonly aliases: string[];
1431
- readonly displayName: string;
1432
- hasName(name: string): boolean;
1433
- readonly allAliases: string[];
1434
- readonly allRefNames: string[] | undefined;
1435
- readonly lowerCaseRefNames: string[] | undefined;
1436
- readonly allRefNamesWithLowerCase: string[] | undefined;
1437
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1438
- readonly refNameColors: string[];
1439
- } & {
1440
- readonly refNames: string[] | undefined;
1441
- } & {
1442
- getCanonicalRefName(refName: string): string | undefined;
1443
- getRefNameColor(refName: string): string | undefined;
1444
- isValidRefName(refName: string): boolean;
1445
- } & {
1446
- setLoaded({ regions, refNameAliases, cytobands, }: {
1447
- regions: import("@jbrowse/core/util/types").Region[];
1448
- refNameAliases: {
1449
- [x: string]: string;
1450
- };
1451
- cytobands: import("@jbrowse/core/util").Feature[];
1452
- }): void;
1453
- setError(e: unknown): void;
1454
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1455
- setRefNameAliases(aliases: {
1456
- [x: string]: string;
1457
- }): void;
1458
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1459
- setLoadingP(p?: Promise<void>): void;
1460
- load(): Promise<void>;
1461
- loadPre(): Promise<void>;
1462
- } & {
1463
- getAdapterMapEntry(adapterConf: {
1464
- [x: string]: unknown;
1465
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1466
- getRefNameMapForAdapter(adapterConf: {
1467
- [x: string]: unknown;
1468
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1469
- [x: string]: string;
1470
- }>;
1471
- getReverseRefNameMapForAdapter(adapterConf: {
1472
- [x: string]: unknown;
1473
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1474
- [x: string]: string;
1475
- }>;
1476
- afterCreate(): void;
1477
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1478
- readonly assemblyNamesList: any[];
1479
- readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
1480
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1481
- } & {
1482
- waitForAssembly(assemblyName: string): Promise<({
1483
- configuration: any;
1484
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1485
- error: unknown;
1486
- loadingP: Promise<void> | undefined;
1487
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1488
- refNameAliases: {
1489
- [x: string]: string;
1490
- } | undefined;
1491
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1492
- } & {
1493
- getConf(arg: string): any;
1494
- readonly lowerCaseRefNameAliases: {
1495
- [k: string]: string;
1496
- } | undefined;
1497
- } & {
1498
- readonly initialized: boolean;
1499
- readonly name: string;
1500
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1501
- readonly aliases: string[];
1502
- readonly displayName: string;
1503
- hasName(name: string): boolean;
1504
- readonly allAliases: string[];
1505
- readonly allRefNames: string[] | undefined;
1506
- readonly lowerCaseRefNames: string[] | undefined;
1507
- readonly allRefNamesWithLowerCase: string[] | undefined;
1508
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1509
- readonly refNameColors: string[];
1510
- } & {
1511
- readonly refNames: string[] | undefined;
1512
- } & {
1513
- getCanonicalRefName(refName: string): string | undefined;
1514
- getRefNameColor(refName: string): string | undefined;
1515
- isValidRefName(refName: string): boolean;
1516
- } & {
1517
- setLoaded({ regions, refNameAliases, cytobands, }: {
1518
- regions: import("@jbrowse/core/util/types").Region[];
1519
- refNameAliases: {
1520
- [x: string]: string;
1521
- };
1522
- cytobands: import("@jbrowse/core/util").Feature[];
1523
- }): void;
1524
- setError(e: unknown): void;
1525
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1526
- setRefNameAliases(aliases: {
1527
- [x: string]: string;
1528
- }): void;
1529
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1530
- setLoadingP(p?: Promise<void>): void;
1531
- load(): Promise<void>;
1532
- loadPre(): Promise<void>;
1533
- } & {
1534
- getAdapterMapEntry(adapterConf: {
1535
- [x: string]: unknown;
1536
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1537
- getRefNameMapForAdapter(adapterConf: {
1538
- [x: string]: unknown;
1539
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1540
- [x: string]: string;
1541
- }>;
1542
- getReverseRefNameMapForAdapter(adapterConf: {
1543
- [x: string]: unknown;
1544
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1545
- [x: string]: string;
1546
- }>;
1547
- afterCreate(): void;
1548
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1549
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1550
- }, {
1551
- error: unknown;
1552
- loadingP: Promise<void> | undefined;
1553
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1554
- refNameAliases: {
1555
- [x: string]: string;
1556
- } | undefined;
1557
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1558
- } & {
1559
- getConf(arg: string): any;
1560
- readonly lowerCaseRefNameAliases: {
1561
- [k: string]: string;
1562
- } | undefined;
1563
- } & {
1564
- readonly initialized: boolean;
1565
- readonly name: string;
1566
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1567
- readonly aliases: string[];
1568
- readonly displayName: string;
1569
- hasName(name: string): boolean;
1570
- readonly allAliases: string[];
1571
- readonly allRefNames: string[] | undefined;
1572
- readonly lowerCaseRefNames: string[] | undefined;
1573
- readonly allRefNamesWithLowerCase: string[] | undefined;
1574
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1575
- readonly refNameColors: string[];
1576
- } & {
1577
- readonly refNames: string[] | undefined;
1578
- } & {
1579
- getCanonicalRefName(refName: string): string | undefined;
1580
- getRefNameColor(refName: string): string | undefined;
1581
- isValidRefName(refName: string): boolean;
1582
- } & {
1583
- setLoaded({ regions, refNameAliases, cytobands, }: {
1584
- regions: import("@jbrowse/core/util/types").Region[];
1585
- refNameAliases: {
1586
- [x: string]: string;
1587
- };
1588
- cytobands: import("@jbrowse/core/util").Feature[];
1589
- }): void;
1590
- setError(e: unknown): void;
1591
- setRegions(regions: import("@jbrowse/core/util/types").Region[]): void;
1592
- setRefNameAliases(aliases: {
1593
- [x: string]: string;
1594
- }): void;
1595
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1596
- setLoadingP(p?: Promise<void>): void;
1597
- load(): Promise<void>;
1598
- loadPre(): Promise<void>;
1599
- } & {
1600
- getAdapterMapEntry(adapterConf: {
1601
- [x: string]: unknown;
1602
- }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1603
- getRefNameMapForAdapter(adapterConf: {
1604
- [x: string]: unknown;
1605
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1606
- [x: string]: string;
1607
- }>;
1608
- getReverseRefNameMapForAdapter(adapterConf: {
1609
- [x: string]: unknown;
1610
- }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1611
- [x: string]: string;
1612
- }>;
1613
- afterCreate(): void;
1614
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1615
- getRefNameMapForAdapter(adapterConf: {
1616
- [x: string]: unknown;
1617
- }, assemblyName: string | undefined, opts: {
1618
- stopToken?: string;
1619
- sessionId: string;
1620
- }): Promise<{
1621
- [x: string]: string;
1622
- } | undefined>;
1623
- getReverseRefNameMapForAdapter(adapterConf: {
1624
- [x: string]: unknown;
1625
- }, assemblyName: string | undefined, opts: {
1626
- stopToken?: string;
1627
- sessionId: string;
1628
- }): Promise<{
1629
- [x: string]: string;
1630
- } | undefined>;
1631
- isValidRefName(refName: string, assemblyName: string): boolean;
1632
- } & {
1633
- afterAttach(): void;
1634
- removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1635
- addAssembly(configuration: any): void;
1636
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
1637
- }, {
1638
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1639
- adminMode: boolean;
1640
- error: unknown;
1641
- textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1642
- pluginManager: PluginManager;
1643
- } & {
1644
- setError(error: unknown): void;
1645
- setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
1646
- setDefaultSession(): void;
1647
- setSessionPath(path: string): void;
1648
- renameCurrentSession(newName: string): void;
1649
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1650
- } & {
1651
- readonly jbrowse: any;
1652
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1653
- readonly configuration: {
1654
- [x: string]: any;
1655
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1656
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1657
- [x: string]: any;
1658
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1659
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1660
- [x: string]: any;
1661
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1662
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1663
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
1664
- readonly adminMode: boolean;
1665
- readonly textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
1666
- } & {
1667
- readonly assemblies: Instance<import("@jbrowse/core/assemblyManager").BaseAssemblyConfigSchema>[];
1668
- } & {
1669
- setSelection(thing: unknown): void;
1670
- clearSelection(): void;
1671
- setHovered(thing: unknown): void;
1672
- } & {
1673
- readonly visibleWidget: any;
1674
- } & {
1675
- setDrawerPosition(arg: string): void;
1676
- updateDrawerWidth(drawerWidth: number): number;
1677
- resizeDrawer(distance: number): number;
1678
- addWidget(typeName: string, id: string, initialState?: {}, conf?: unknown): any;
1679
- showWidget(widget: any): void;
1680
- hasWidget(widget: any): boolean;
1681
- hideWidget(widget: any): void;
1682
- minimizeWidgetDrawer(): void;
1683
- showWidgetDrawer(): void;
1684
- hideAllWidgets(): void;
1685
- editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1686
- afterAttach(): void;
1687
- } & {
1688
- readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
1689
- } & {
1690
- makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): ({
1691
- name: string;
1692
- tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
1693
- configuration: {
1694
- [x: string]: any;
1695
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1696
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1697
- [x: string]: any;
1698
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1699
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1700
- [x: string]: any;
1701
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1702
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1703
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1704
- name: {
1705
- type: string;
1706
- defaultValue: string;
1707
- description: string;
1708
- };
1709
- assemblyNames: {
1710
- type: string;
1711
- defaultValue: never[];
1712
- description: string;
1713
- };
1714
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
1715
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1716
- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1717
- } & {
1718
- afterAttach(): void;
1719
- addTrackConf(trackConf: Record<string, unknown> | ({
1720
- [x: string]: any;
1721
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1722
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1723
- [x: string]: any;
1724
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1725
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1726
- [x: string]: any;
1727
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1728
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1729
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
1730
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
1731
- [x: string]: any;
1732
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1733
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1734
- [x: string]: any;
1735
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1736
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1737
- [x: string]: any;
1738
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1739
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1740
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
1741
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
1742
- clear(): void;
1743
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1744
- name: import("mobx-state-tree").ISimpleType<string>;
1745
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
1746
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1747
- name: {
1748
- type: string;
1749
- defaultValue: string;
1750
- description: string;
1751
- };
1752
- assemblyNames: {
1753
- type: string;
1754
- defaultValue: never[];
1755
- description: string;
1756
- };
1757
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
1758
- }, {
1759
- connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1760
- } & {
1761
- afterAttach(): void;
1762
- addTrackConf(trackConf: Record<string, unknown> | ({
1763
- [x: string]: any;
1764
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1765
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1766
- [x: string]: any;
1767
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1768
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1769
- [x: string]: any;
1770
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1771
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1772
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
1773
- addTrackConfs(trackConfs: (Record<string, unknown> | ({
1774
- [x: string]: any;
1775
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1776
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1777
- [x: string]: any;
1778
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1779
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1780
- [x: string]: any;
1781
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1782
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
1783
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
1784
- setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
1785
- clear(): void;
1786
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1787
- prepareToBreakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
1788
- breakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
1789
- deleteConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1790
- addConnectionConf(connectionConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1791
- clearConnections(): void;
1792
- } & {
1793
- queueOfDialogs: [import("@jbrowse/core/util/types").DialogComponentType, unknown][];
1794
- } & {
1795
- readonly DialogComponent: import("@jbrowse/core/util/types").DialogComponentType | undefined;
1796
- readonly DialogProps: unknown;
1797
- } & {
1798
- removeActiveDialog(): void;
1799
- queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util/types").DialogComponentType, unknown]): void;
1800
- } & {
1801
- getReferring(object: import("mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
1802
- } & {
1803
- removeReferring(referring: import("@jbrowse/product-core").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
1804
- } & {
1805
- readonly tracks: import("@jbrowse/core/configuration").AnyConfigurationModel[];
1806
- } & {
1807
- addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
1808
- deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
1809
- } & {
1810
- snackbarMessages: import("mobx").IObservableArray<import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
1811
- } & {
1812
- readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
1813
- } & {
1814
- notify(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
1815
- notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
1816
- pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
1817
- popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
1818
- removeSnackbarMessage(message: string): void;
1819
- } & {
1820
- task: undefined;
1821
- } & {
1822
- readonly version: any;
1823
- readonly assemblies: any[];
1824
- readonly assemblyNames: any[];
1825
- readonly connections: any;
1826
- readonly assemblyManager: any;
1827
- readonly views: any[];
1828
- renderProps(): {
1829
- theme: any;
1830
- highResolutionScaling: any;
1831
- };
1832
- } & {
1833
- addView(typeName: string, initialState?: {}): any;
1834
- removeView(): void;
1835
- } & {
1836
- getTrackActionMenuItems(config: any): {
1837
- label: string;
1838
- onClick: () => void;
1839
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1840
- muiName: string;
1841
- };
1842
- }[];
1843
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
1844
- export type SessionStateModel = ReturnType<typeof sessionModelFactory>;
1845
- export type SessionModel = Instance<SessionStateModel>;