@jbrowse/react-circular-genome-view2 3.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. package/LICENSE +201 -0
  2. package/README.md +75 -0
  3. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +5 -0
  4. package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +23 -0
  5. package/dist/JBrowseCircularGenomeView/index.d.ts +1 -0
  6. package/dist/JBrowseCircularGenomeView/index.js +8 -0
  7. package/dist/corePlugins.d.ts +3 -0
  8. package/dist/corePlugins.js +22 -0
  9. package/dist/createModel/AboutDialog.d.ts +1 -0
  10. package/dist/createModel/AboutDialog.js +5 -0
  11. package/dist/createModel/createConfigModel.d.ts +104 -0
  12. package/dist/createModel/createConfigModel.js +43 -0
  13. package/dist/createModel/createModel.d.ts +1387 -0
  14. package/dist/createModel/createModel.js +117 -0
  15. package/dist/createModel/createSessionModel.d.ts +260 -0
  16. package/dist/createModel/createSessionModel.js +115 -0
  17. package/dist/createModel/index.d.ts +3 -0
  18. package/dist/createModel/index.js +12 -0
  19. package/dist/createViewState.d.ts +3780 -0
  20. package/dist/createViewState.js +64 -0
  21. package/dist/index.d.ts +4 -0
  22. package/dist/index.js +14 -0
  23. package/dist/loadPlugins.d.ts +13 -0
  24. package/dist/loadPlugins.js +12 -0
  25. package/dist/react-circular-genome-view.umd.production.min.js +185 -0
  26. package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +141 -0
  27. package/dist/react-circular-genome-view.umd.production.min.js.map +1 -0
  28. package/dist/types.d.ts +5 -0
  29. package/dist/types.js +2 -0
  30. package/dist/version.d.ts +1 -0
  31. package/dist/version.js +4 -0
  32. package/dist/webpack.d.ts +7 -0
  33. package/dist/webpack.js +53 -0
  34. package/docs/example.md +105 -0
  35. package/docs/img/exampleView.png +0 -0
  36. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +5 -0
  37. package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +21 -0
  38. package/esm/JBrowseCircularGenomeView/index.d.ts +1 -0
  39. package/esm/JBrowseCircularGenomeView/index.js +1 -0
  40. package/esm/corePlugins.d.ts +3 -0
  41. package/esm/corePlugins.js +17 -0
  42. package/esm/createModel/AboutDialog.d.ts +1 -0
  43. package/esm/createModel/AboutDialog.js +1 -0
  44. package/esm/createModel/createConfigModel.d.ts +104 -0
  45. package/esm/createModel/createConfigModel.js +37 -0
  46. package/esm/createModel/createModel.d.ts +1387 -0
  47. package/esm/createModel/createModel.js +78 -0
  48. package/esm/createModel/createSessionModel.d.ts +260 -0
  49. package/esm/createModel/createSessionModel.js +76 -0
  50. package/esm/createModel/index.d.ts +3 -0
  51. package/esm/createModel/index.js +3 -0
  52. package/esm/createViewState.d.ts +3780 -0
  53. package/esm/createViewState.js +58 -0
  54. package/esm/index.d.ts +4 -0
  55. package/esm/index.js +4 -0
  56. package/esm/loadPlugins.d.ts +13 -0
  57. package/esm/loadPlugins.js +6 -0
  58. package/esm/types.d.ts +5 -0
  59. package/esm/types.js +1 -0
  60. package/esm/version.d.ts +1 -0
  61. package/esm/version.js +1 -0
  62. package/esm/webpack.d.ts +7 -0
  63. package/esm/webpack.js +7 -0
  64. package/package.json +68 -0
@@ -0,0 +1,117 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
35
+ var __importDefault = (this && this.__importDefault) || function (mod) {
36
+ return (mod && mod.__esModule) ? mod : { "default": mod };
37
+ };
38
+ Object.defineProperty(exports, "__esModule", { value: true });
39
+ exports.default = createModel;
40
+ const PluginManager_1 = __importDefault(require("@jbrowse/core/PluginManager"));
41
+ const TextSearchManager_1 = __importDefault(require("@jbrowse/core/TextSearch/TextSearchManager"));
42
+ const assemblyManager_1 = __importStar(require("@jbrowse/core/assemblyManager"));
43
+ const RpcManager_1 = __importDefault(require("@jbrowse/core/rpc/RpcManager"));
44
+ const mobx_state_tree_1 = require("mobx-state-tree");
45
+ const corePlugins_1 = __importDefault(require("../corePlugins"));
46
+ const createConfigModel_1 = __importDefault(require("./createConfigModel"));
47
+ const createSessionModel_1 = __importDefault(require("./createSessionModel"));
48
+ const version_1 = require("../version");
49
+ function createModel(runtimePlugins, makeWorkerInstance = () => {
50
+ throw new Error('no makeWorkerInstance supplied');
51
+ }) {
52
+ const pluginManager = new PluginManager_1.default([...corePlugins_1.default, ...runtimePlugins].map(P => new P()));
53
+ pluginManager.createPluggableElements();
54
+ const Session = (0, createSessionModel_1.default)(pluginManager);
55
+ const assemblyConfigSchema = (0, assemblyManager_1.assemblyConfigSchemaFactory)(pluginManager);
56
+ const assemblyManagerType = (0, assemblyManager_1.default)(assemblyConfigSchema, pluginManager);
57
+ const rootModel = mobx_state_tree_1.types
58
+ .model('ReactCircularGenomeView', {
59
+ config: (0, createConfigModel_1.default)(pluginManager, assemblyConfigSchema),
60
+ session: Session,
61
+ assemblyManager: mobx_state_tree_1.types.optional(assemblyManagerType, {}),
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+ internetAccounts: mobx_state_tree_1.types.array(pluginManager.pluggableMstType('internet account', 'stateModel')),
63
+ })
64
+ .volatile(self => ({
65
+ error: undefined,
66
+ adminMode: false,
67
+ version: version_1.version,
68
+ rpcManager: new RpcManager_1.default(pluginManager, self.config.configuration.rpc, {
69
+ WebWorkerRpcDriver: {
70
+ makeWorkerInstance,
71
+ },
72
+ MainThreadRpcDriver: {},
73
+ }),
74
+ textSearchManager: new TextSearchManager_1.default(pluginManager),
75
+ }))
76
+ .actions(self => ({
77
+ setSession(sessionSnapshot) {
78
+ self.session = (0, mobx_state_tree_1.cast)(sessionSnapshot);
79
+ },
80
+ renameCurrentSession(sessionName) {
81
+ const snapshot = JSON.parse(JSON.stringify((0, mobx_state_tree_1.getSnapshot)(self.session)));
82
+ snapshot.name = sessionName;
83
+ this.setSession(snapshot);
84
+ },
85
+ setError(error) {
86
+ self.error = error;
87
+ },
88
+ addInternetAccount(internetAccount) {
89
+ self.internetAccounts.push(internetAccount);
90
+ },
91
+ findAppropriateInternetAccount(location) {
92
+ const selectedId = location.internetAccountId;
93
+ if (selectedId) {
94
+ const selectedAccount = self.internetAccounts.find(a => a.internetAccountId === selectedId);
95
+ if (selectedAccount) {
96
+ return selectedAccount;
97
+ }
98
+ }
99
+ for (const account of self.internetAccounts) {
100
+ const handleResult = account.handlesLocation(location);
101
+ if (handleResult) {
102
+ return account;
103
+ }
104
+ }
105
+ return null;
106
+ },
107
+ }))
108
+ .views(self => ({
109
+ get jbrowse() {
110
+ return self.config;
111
+ },
112
+ get pluginManager() {
113
+ return pluginManager;
114
+ },
115
+ }));
116
+ return { model: rootModel, pluginManager };
117
+ }
@@ -0,0 +1,260 @@
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
+ import type { Instance } from 'mobx-state-tree';
3
+ export default function sessionModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
4
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ name: import("mobx-state-tree").ISimpleType<string>;
6
+ margin: import("mobx-state-tree").IType<number | undefined, number, number>;
7
+ } & {
8
+ drawerPosition: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
+ drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
10
+ widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
11
+ activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
12
+ minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
13
+ } & {
14
+ connectionInstances: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
15
+ name: import("mobx-state-tree").ISimpleType<string>;
16
+ tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
17
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
18
+ name: {
19
+ type: string;
20
+ defaultValue: string;
21
+ description: string;
22
+ };
23
+ assemblyNames: {
24
+ type: string;
25
+ defaultValue: never[];
26
+ description: string;
27
+ };
28
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
29
+ }, {
30
+ connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
31
+ } & {
32
+ afterAttach(): void;
33
+ addTrackConf(trackConf: Record<string, unknown> | ({
34
+ [x: string]: any;
35
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
36
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
37
+ [x: string]: any;
38
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
39
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
40
+ [x: string]: any;
41
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
42
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
43
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
44
+ addTrackConfs(trackConfs: (Record<string, unknown> | ({
45
+ [x: string]: any;
46
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
47
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
48
+ [x: string]: any;
49
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
50
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
51
+ [x: string]: any;
52
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
53
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
54
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
55
+ setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
56
+ clear(): void;
57
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
58
+ } & {
59
+ view: import("mobx-state-tree").IAnyModelType;
60
+ }, {
61
+ selection: unknown;
62
+ hovered: unknown;
63
+ } & {
64
+ readonly root: import("mobx-state-tree").TypeOrStateTreeNodeToStateTreeNode<ROOT_MODEL_TYPE>;
65
+ } & {
66
+ readonly jbrowse: any;
67
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
68
+ readonly configuration: {
69
+ [x: string]: any;
70
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
71
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
72
+ [x: string]: any;
73
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
74
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
75
+ [x: string]: any;
76
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
77
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
78
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
79
+ readonly adminMode: boolean;
80
+ readonly textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
81
+ } & {
82
+ readonly assemblies: Instance<import("@jbrowse/core/assemblyManager").BaseAssemblyConfigSchema>[];
83
+ } & {
84
+ setSelection(thing: unknown): void;
85
+ clearSelection(): void;
86
+ setHovered(thing: unknown): void;
87
+ } & {
88
+ readonly visibleWidget: any;
89
+ } & {
90
+ setDrawerPosition(arg: string): void;
91
+ updateDrawerWidth(drawerWidth: number): number;
92
+ resizeDrawer(distance: number): number;
93
+ addWidget(typeName: string, id: string, initialState?: {}, conf?: unknown): any;
94
+ showWidget(widget: any): void;
95
+ hasWidget(widget: any): boolean;
96
+ hideWidget(widget: any): void;
97
+ minimizeWidgetDrawer(): void;
98
+ showWidgetDrawer(): void;
99
+ hideAllWidgets(): void;
100
+ editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
101
+ afterAttach(): void;
102
+ } & {
103
+ readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
104
+ } & {
105
+ makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): ({
106
+ name: string;
107
+ tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
108
+ configuration: {
109
+ [x: string]: any;
110
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
111
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
112
+ [x: string]: any;
113
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
114
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
115
+ [x: string]: any;
116
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
117
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
118
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
119
+ name: {
120
+ type: string;
121
+ defaultValue: string;
122
+ description: string;
123
+ };
124
+ assemblyNames: {
125
+ type: string;
126
+ defaultValue: never[];
127
+ description: string;
128
+ };
129
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
130
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
131
+ connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
132
+ } & {
133
+ afterAttach(): void;
134
+ addTrackConf(trackConf: Record<string, unknown> | ({
135
+ [x: string]: any;
136
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
137
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
138
+ [x: string]: any;
139
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
140
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
141
+ [x: string]: any;
142
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
143
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
144
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
145
+ addTrackConfs(trackConfs: (Record<string, unknown> | ({
146
+ [x: string]: any;
147
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
148
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
149
+ [x: string]: any;
150
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
151
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
152
+ [x: string]: any;
153
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
154
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
155
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
156
+ setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
157
+ clear(): void;
158
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
159
+ name: import("mobx-state-tree").ISimpleType<string>;
160
+ tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
161
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
162
+ name: {
163
+ type: string;
164
+ defaultValue: string;
165
+ description: string;
166
+ };
167
+ assemblyNames: {
168
+ type: string;
169
+ defaultValue: never[];
170
+ description: string;
171
+ };
172
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
173
+ }, {
174
+ connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
175
+ } & {
176
+ afterAttach(): void;
177
+ addTrackConf(trackConf: Record<string, unknown> | ({
178
+ [x: string]: any;
179
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
180
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
181
+ [x: string]: any;
182
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
183
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
184
+ [x: string]: any;
185
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
186
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
187
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
188
+ addTrackConfs(trackConfs: (Record<string, unknown> | ({
189
+ [x: string]: any;
190
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
191
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
192
+ [x: string]: any;
193
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
194
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
195
+ [x: string]: any;
196
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
197
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
198
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
199
+ setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
200
+ clear(): void;
201
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
202
+ prepareToBreakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
203
+ breakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
204
+ deleteConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
205
+ addConnectionConf(connectionConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
206
+ clearConnections(): void;
207
+ } & {
208
+ queueOfDialogs: [import("@jbrowse/core/util/types").DialogComponentType, unknown][];
209
+ } & {
210
+ readonly DialogComponent: import("@jbrowse/core/util/types").DialogComponentType | undefined;
211
+ readonly DialogProps: unknown;
212
+ } & {
213
+ removeActiveDialog(): void;
214
+ queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util/types").DialogComponentType, unknown]): void;
215
+ } & {
216
+ getReferring(object: import("mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
217
+ } & {
218
+ removeReferring(referring: import("@jbrowse/product-core").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
219
+ } & {
220
+ readonly tracks: import("@jbrowse/core/configuration").AnyConfigurationModel[];
221
+ } & {
222
+ addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
223
+ deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
224
+ } & {
225
+ snackbarMessages: import("mobx").IObservableArray<import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
226
+ } & {
227
+ readonly snackbarMessageSet: Map<string, import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage>;
228
+ } & {
229
+ notify(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
230
+ notifyError(errorMessage: string, error?: unknown, extra?: unknown): void;
231
+ pushSnackbarMessage(message: string, level?: import("@jbrowse/core/util/types").NotificationLevel, action?: import("@jbrowse/core/util/types").SnackAction): void;
232
+ popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
233
+ removeSnackbarMessage(message: string): void;
234
+ } & {
235
+ task: undefined;
236
+ } & {
237
+ readonly version: any;
238
+ readonly assemblies: any[];
239
+ readonly assemblyNames: any[];
240
+ readonly connections: any;
241
+ readonly assemblyManager: any;
242
+ readonly views: any[];
243
+ renderProps(): {
244
+ theme: any;
245
+ highResolutionScaling: any;
246
+ };
247
+ } & {
248
+ addView(typeName: string, initialState?: {}): any;
249
+ removeView(): void;
250
+ } & {
251
+ getTrackActionMenuItems(config: any): {
252
+ label: string;
253
+ onClick: () => void;
254
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
255
+ muiName: string;
256
+ };
257
+ }[];
258
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
259
+ export type SessionStateModel = ReturnType<typeof sessionModelFactory>;
260
+ export type SessionModel = Instance<SessionStateModel>;
@@ -0,0 +1,115 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
35
+ var __importDefault = (this && this.__importDefault) || function (mod) {
36
+ return (mod && mod.__esModule) ? mod : { "default": mod };
37
+ };
38
+ Object.defineProperty(exports, "__esModule", { value: true });
39
+ exports.default = sessionModelFactory;
40
+ const react_1 = require("react");
41
+ const configuration_1 = require("@jbrowse/core/configuration");
42
+ const SnackbarModel_1 = __importDefault(require("@jbrowse/core/ui/SnackbarModel"));
43
+ const product_core_1 = require("@jbrowse/product-core");
44
+ const Info_1 = __importDefault(require("@mui/icons-material/Info"));
45
+ const mobx_state_tree_1 = require("mobx-state-tree");
46
+ const AboutDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AboutDialog'))));
47
+ function sessionModelFactory(pluginManager) {
48
+ return mobx_state_tree_1.types
49
+ .compose('ReactCircularGenomeViewSession', (0, product_core_1.BaseSessionModel)(pluginManager), (0, product_core_1.DrawerWidgetSessionMixin)(pluginManager), (0, product_core_1.ConnectionManagementSessionMixin)(pluginManager), (0, product_core_1.DialogQueueSessionMixin)(pluginManager), (0, product_core_1.TracksManagerSessionMixin)(pluginManager), (0, product_core_1.ReferenceManagementSessionMixin)(pluginManager), (0, SnackbarModel_1.default)())
50
+ .props({
51
+ view: pluginManager.getViewType('CircularView').stateModel,
52
+ })
53
+ .volatile(() => ({
54
+ task: undefined,
55
+ }))
56
+ .views(self => ({
57
+ get version() {
58
+ return (0, mobx_state_tree_1.getParent)(self).version;
59
+ },
60
+ get assemblies() {
61
+ return [(0, mobx_state_tree_1.getParent)(self).config.assembly];
62
+ },
63
+ get assemblyNames() {
64
+ return [(0, mobx_state_tree_1.getParent)(self).config.assemblyName];
65
+ },
66
+ get connections() {
67
+ return (0, mobx_state_tree_1.getParent)(self).config.connections;
68
+ },
69
+ get assemblyManager() {
70
+ return (0, mobx_state_tree_1.getParent)(self).assemblyManager;
71
+ },
72
+ get views() {
73
+ return [self.view];
74
+ },
75
+ renderProps() {
76
+ return {
77
+ theme: (0, configuration_1.getConf)(self, 'theme'),
78
+ highResolutionScaling: (0, configuration_1.getConf)(self, 'highResolutionScaling'),
79
+ };
80
+ },
81
+ }))
82
+ .actions(self => ({
83
+ addView(typeName, initialState = {}) {
84
+ const typeDefinition = pluginManager.getElementType('view', typeName);
85
+ if (!typeDefinition) {
86
+ throw new Error(`unknown view type ${typeName}`);
87
+ }
88
+ self.view = {
89
+ ...initialState,
90
+ type: typeName,
91
+ };
92
+ return self.view;
93
+ },
94
+ removeView() { },
95
+ }))
96
+ .views(self => ({
97
+ getTrackActionMenuItems(config) {
98
+ return [
99
+ {
100
+ label: 'About track',
101
+ onClick: () => {
102
+ self.queueDialog(doneCallback => [
103
+ AboutDialog,
104
+ { config, handleClose: doneCallback },
105
+ ]);
106
+ },
107
+ icon: Info_1.default,
108
+ },
109
+ ];
110
+ },
111
+ }));
112
+ }
113
+ function z(x) {
114
+ return x;
115
+ }
@@ -0,0 +1,3 @@
1
+ export { default } from './createModel';
2
+ export { default as createSessionModel } from './createSessionModel';
3
+ export { default as createConfigModel } from './createConfigModel';
@@ -0,0 +1,12 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.createConfigModel = exports.createSessionModel = exports.default = void 0;
7
+ var createModel_1 = require("./createModel");
8
+ Object.defineProperty(exports, "default", { enumerable: true, get: function () { return __importDefault(createModel_1).default; } });
9
+ var createSessionModel_1 = require("./createSessionModel");
10
+ Object.defineProperty(exports, "createSessionModel", { enumerable: true, get: function () { return __importDefault(createSessionModel_1).default; } });
11
+ var createConfigModel_1 = require("./createConfigModel");
12
+ Object.defineProperty(exports, "createConfigModel", { enumerable: true, get: function () { return __importDefault(createConfigModel_1).default; } });