@jbrowse/react-circular-genome-view2 3.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +201 -0
- package/README.md +75 -0
- package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +5 -0
- package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +23 -0
- package/dist/JBrowseCircularGenomeView/index.d.ts +1 -0
- package/dist/JBrowseCircularGenomeView/index.js +8 -0
- package/dist/corePlugins.d.ts +3 -0
- package/dist/corePlugins.js +22 -0
- package/dist/createModel/AboutDialog.d.ts +1 -0
- package/dist/createModel/AboutDialog.js +5 -0
- package/dist/createModel/createConfigModel.d.ts +104 -0
- package/dist/createModel/createConfigModel.js +43 -0
- package/dist/createModel/createModel.d.ts +1387 -0
- package/dist/createModel/createModel.js +117 -0
- package/dist/createModel/createSessionModel.d.ts +260 -0
- package/dist/createModel/createSessionModel.js +115 -0
- package/dist/createModel/index.d.ts +3 -0
- package/dist/createModel/index.js +12 -0
- package/dist/createViewState.d.ts +3780 -0
- package/dist/createViewState.js +64 -0
- package/dist/index.d.ts +4 -0
- package/dist/index.js +14 -0
- package/dist/loadPlugins.d.ts +13 -0
- package/dist/loadPlugins.js +12 -0
- package/dist/react-circular-genome-view.umd.production.min.js +185 -0
- package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +141 -0
- package/dist/react-circular-genome-view.umd.production.min.js.map +1 -0
- package/dist/types.d.ts +5 -0
- package/dist/types.js +2 -0
- package/dist/version.d.ts +1 -0
- package/dist/version.js +4 -0
- package/dist/webpack.d.ts +7 -0
- package/dist/webpack.js +53 -0
- package/docs/example.md +105 -0
- package/docs/img/exampleView.png +0 -0
- package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +5 -0
- package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +21 -0
- package/esm/JBrowseCircularGenomeView/index.d.ts +1 -0
- package/esm/JBrowseCircularGenomeView/index.js +1 -0
- package/esm/corePlugins.d.ts +3 -0
- package/esm/corePlugins.js +17 -0
- package/esm/createModel/AboutDialog.d.ts +1 -0
- package/esm/createModel/AboutDialog.js +1 -0
- package/esm/createModel/createConfigModel.d.ts +104 -0
- package/esm/createModel/createConfigModel.js +37 -0
- package/esm/createModel/createModel.d.ts +1387 -0
- package/esm/createModel/createModel.js +78 -0
- package/esm/createModel/createSessionModel.d.ts +260 -0
- package/esm/createModel/createSessionModel.js +76 -0
- package/esm/createModel/index.d.ts +3 -0
- package/esm/createModel/index.js +3 -0
- package/esm/createViewState.d.ts +3780 -0
- package/esm/createViewState.js +58 -0
- package/esm/index.d.ts +4 -0
- package/esm/index.js +4 -0
- package/esm/loadPlugins.d.ts +13 -0
- package/esm/loadPlugins.js +6 -0
- package/esm/types.d.ts +5 -0
- package/esm/types.js +1 -0
- package/esm/version.d.ts +1 -0
- package/esm/version.js +1 -0
- package/esm/webpack.d.ts +7 -0
- package/esm/webpack.js +7 -0
- package/package.json +68 -0
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import { autorun } from 'mobx';
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import { onPatch } from 'mobx-state-tree';
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import createModel from './createModel';
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export default function createViewState(opts) {
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const { assembly, tracks, internetAccounts, configuration, aggregateTextSearchAdapters, plugins, makeWorkerInstance, onChange, } = opts;
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const { model, pluginManager } = createModel(plugins || [], makeWorkerInstance);
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let { defaultSession } = opts;
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if (!defaultSession) {
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defaultSession = {
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name: 'this session',
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view: {
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id: 'circularView',
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type: 'CircularView',
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},
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};
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}
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const stateSnapshot = {
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config: {
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configuration,
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assembly,
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tracks,
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internetAccounts,
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aggregateTextSearchAdapters,
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defaultSession,
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},
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session: defaultSession,
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};
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const stateTree = model.create(stateSnapshot, { pluginManager });
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for (const account of stateTree.config.internetAccounts) {
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const internetAccountType = pluginManager.getInternetAccountType(account.type);
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if (!internetAccountType) {
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throw new Error(`unknown internet account type ${account.type}`);
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}
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stateTree.addInternetAccount({
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type: account.type,
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configuration: account,
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});
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}
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pluginManager.setRootModel(stateTree);
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pluginManager.configure();
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autorun(reaction => {
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var _a;
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const { session, assemblyManager } = stateTree;
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if (!session.view.initialized) {
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return;
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}
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const regions = (_a = assemblyManager.get(assembly === null || assembly === void 0 ? void 0 : assembly.name)) === null || _a === void 0 ? void 0 : _a.regions;
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if (!regions) {
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return;
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}
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session.view.setDisplayedRegions(regions);
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reaction.dispose();
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});
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if (onChange) {
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onPatch(stateTree, onChange);
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}
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return stateTree;
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}
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package/esm/index.d.ts
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package/esm/index.js
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import type { LoadedPlugin } from '@jbrowse/core/PluginLoader';
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interface PluginDefinition {
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name: string;
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url: string;
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}
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export default function loadPlugins(pluginDefinitions: PluginDefinition[], args?: {
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fetchESM?: (url: string) => Promise<LoadedPlugin>;
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baseUrl?: string;
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}): Promise<{
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plugin: import("@jbrowse/core/Plugin").PluginConstructor;
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definition: import("@jbrowse/core/PluginLoader").PluginDefinition;
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}[]>;
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export {};
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import PluginLoader from '@jbrowse/core/PluginLoader';
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export default async function loadPlugins(pluginDefinitions, args) {
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const pluginLoader = new PluginLoader(pluginDefinitions, args);
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pluginLoader.installGlobalReExports(window);
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return pluginLoader.load(args === null || args === void 0 ? void 0 : args.baseUrl);
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}
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package/esm/types.d.ts
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package/esm/types.js
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export {};
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package/esm/version.d.ts
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export const version: "3.2.0";
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package/esm/version.js
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export const version = '3.2.0';
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package/esm/webpack.d.ts
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import * as React from 'react';
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export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
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export { default as createModel } from './createModel';
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export { default as createViewState } from './createViewState';
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export { default as loadPlugins } from './loadPlugins';
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export * from 'react-dom/client';
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export { React };
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package/esm/webpack.js
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import * as React from 'react';
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export { default as JBrowseCircularGenomeView } from './JBrowseCircularGenomeView';
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export { default as createModel } from './createModel';
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export { default as createViewState } from './createViewState';
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export { default as loadPlugins } from './loadPlugins';
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export * from 'react-dom/client';
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export { React };
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package/package.json
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{
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"name": "@jbrowse/react-circular-genome-view2",
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"version": "3.2.0",
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"description": "JBrowse 2 circular genome view React component",
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"keywords": [
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"jbrowse",
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"jbrowse2"
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],
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"license": "MIT",
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"homepage": "https://jbrowse.org",
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"bugs": "https://github.com/GMOD/jbrowse-components/issues",
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"repository": {
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"type": "git",
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"url": "https://github.com/GMOD/jbrowse-components.git",
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"directory": "products/jbrowse-react-circular-genome-view"
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},
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"author": "JBrowse Team",
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"main": "dist/index.js",
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"module": "esm/index.js",
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"files": [
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"dist",
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"esm",
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"docs"
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],
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"scripts": {
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"prebuild": "npm run clean",
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"build": "npm-run-all build:*",
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"prepublishOnly": "node output-version.js > src/version.js && git add -A src && git commit -m '[skip ci] Bump version.js'",
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"prepack": "npm run build",
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"build:esm": "tsc -b tsconfig.build.esm.json",
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"build:commonjs": "tsc -b tsconfig.build.commonjs.json",
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"build:webpack": "webpack",
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"clean": "rimraf esm dist *.tsbuildinfo",
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"storybook": "storybook dev --port 6006",
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"storybook:build": "storybook build"
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},
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"dependencies": {
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"@babel/runtime": "^7.17.9",
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"@emotion/cache": "^11.7.1",
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"@emotion/react": "^11.9.0",
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"@emotion/styled": "^11.8.1",
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"@jbrowse/core": "^3.2.0",
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"@jbrowse/embedded-core": "^3.2.0",
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"@jbrowse/plugin-authentication": "^3.2.0",
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"@jbrowse/plugin-circular-view": "^3.2.0",
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"@jbrowse/plugin-config": "^3.2.0",
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"@jbrowse/plugin-data-management": "^3.2.0",
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"@jbrowse/plugin-linear-genome-view": "^3.2.0",
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"@jbrowse/plugin-sequence": "^3.2.0",
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"@jbrowse/plugin-variants": "^3.2.0",
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"@jbrowse/plugin-wiggle": "^3.2.0",
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"@jbrowse/product-core": "^3.2.0",
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"@mui/icons-material": "^6.0.0",
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"@mui/material": "^6.0.0",
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"mobx": "^6.6.0",
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"mobx-react": "^9.0.0",
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"mobx-state-tree": "^5.0.0",
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"rxjs": "^7.0.0",
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"tss-react": "^4.4.1"
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},
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"peerDependencies": {
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"react": ">=18.0.0"
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},
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"publishConfig": {
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"access": "public"
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},
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"gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
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}
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