@jbrowse/react-app2 3.7.0 → 4.0.1

package/dist/createViewState.js

@@ -1,26 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = createViewState;
-const mobx_state_tree_1 = require("mobx-state-tree");
-const createModel_1 = __importDefault(require("./createModel"));
-function createViewState(opts) {
-    const { config, plugins = [], onChange, makeWorkerInstance } = opts;
-    const { defaultSession = { name: 'NewSession' } } = config;
-    const { model, pluginManager } = (0, createModel_1.default)({
-        runtimePlugins: plugins,
-        makeWorkerInstance,
-    });
-    const stateTree = model.create({
-        jbrowse: config,
-        session: defaultSession,
-    }, { pluginManager });
-    pluginManager.setRootModel(stateTree);
-    pluginManager.configure();
-    if (onChange) {
-        (0, mobx_state_tree_1.onPatch)(stateTree, onChange);
-    }
-    return stateTree;
-}

package/dist/index.d.ts

@@ -1,4 +0,0 @@
-export { default as JBrowseApp } from './JBrowseApp';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';

package/dist/index.js

@@ -1,14 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.loadPlugins = exports.createViewState = exports.createModel = exports.JBrowseApp = void 0;
-var JBrowseApp_1 = require("./JBrowseApp");
-Object.defineProperty(exports, "JBrowseApp", { enumerable: true, get: function () { return __importDefault(JBrowseApp_1).default; } });
-var createModel_1 = require("./createModel");
-Object.defineProperty(exports, "createModel", { enumerable: true, get: function () { return __importDefault(createModel_1).default; } });
-var createViewState_1 = require("./createViewState");
-Object.defineProperty(exports, "createViewState", { enumerable: true, get: function () { return __importDefault(createViewState_1).default; } });
-var loadPlugins_1 = require("./loadPlugins");
-Object.defineProperty(exports, "loadPlugins", { enumerable: true, get: function () { return __importDefault(loadPlugins_1).default; } });

package/dist/jbrowseModel.d.ts

@@ -1,139 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-export default function JBrowseWeb({ pluginManager, assemblyConfigSchema, }: {
-    pluginManager: PluginManager;
-    assemblyConfigSchema: AnyConfigurationSchemaType;
-}): import("mobx-state-tree").IModelType<{
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            defaultDriver: {
-                type: string;
-                description: string;
-                defaultValue: string;
-            };
-            drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        highResolutionScaling: {
-            type: string;
-            defaultValue: number;
-        };
-        formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            feature: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            subfeatures: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            depth: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-            maxDepth: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            config: {
-                type: string;
-                description: string;
-                defaultValue: {};
-                contextVariable: string[];
-            };
-            hideUris: {
-                type: string;
-                defaultValue: boolean;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        shareURL: {
-            type: string;
-            defaultValue: string;
-        };
-        disableAnalytics: {
-            type: string;
-            defaultValue: boolean;
-        };
-        hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                trackNames: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-                categories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-            defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                categoryNames: {
-                    type: string;
-                    defaultValue: never[];
-                };
-                topLevelCategories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-                subCategories: {
-                    type: string;
-                    defaultValue: boolean;
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        theme: {
-            type: string;
-            defaultValue: {};
-        };
-        extraThemes: {
-            type: string;
-            defaultValue: {};
-        };
-        logoPath: {
-            type: string;
-            defaultValue: {
-                uri: string;
-                locationType: string;
-            };
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    plugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/core/PluginLoader").PluginDefinition, import("@jbrowse/core/PluginLoader").PluginDefinition, import("@jbrowse/core/PluginLoader").PluginDefinition>>;
-    assemblies: import("mobx-state-tree").IArrayType<AnyConfigurationSchemaType>;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    defaultSession: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<any, any, any>, [undefined]>;
-    preConfiguredSessions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
-}, {
-    readonly assemblyNames: string[];
-    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-} & {
-    addAssemblyConf(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>) | undefined;
-    removeAssemblyConf(assemblyName: string): void;
-    addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
-    addConnectionConf(connectionConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
-    deleteConnectionConf(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): boolean;
-    deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): boolean;
-    addPlugin(pluginDefinition: import("@jbrowse/core/PluginLoader").PluginDefinition): void;
-    removePlugin(pluginDefinition: import("@jbrowse/core/PluginLoader").PluginDefinition): void;
-    setDefaultSessionConf(sessionConf: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
-    addInternetAccountConf(internetAccountConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
-    deleteInternetAccountConf(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): boolean;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/jbrowseModel.js

@@ -1,7 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = JBrowseWeb;
-const app_core_1 = require("@jbrowse/app-core");
-function JBrowseWeb({ pluginManager, assemblyConfigSchema, }) {
-    return (0, app_core_1.JBrowseModelF)({ pluginManager, assemblyConfigSchema });
-}

package/dist/loadPlugins.d.ts

@@ -1,12 +0,0 @@
-import type { LoadedPlugin } from '@jbrowse/core/PluginLoader';
-interface PluginDefinition {
-    name: string;
-    url: string;
-}
-export default function loadPlugins(pluginDefinitions: PluginDefinition[], args?: {
-    fetchESM: (url: string) => Promise<LoadedPlugin>;
-}): Promise<{
-    plugin: import("@jbrowse/core/Plugin").PluginConstructor;
-    definition: import("@jbrowse/core/PluginLoader").PluginDefinition;
-}[]>;
-export {};

package/dist/loadPlugins.js

@@ -1,12 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = loadPlugins;
-const PluginLoader_1 = __importDefault(require("@jbrowse/core/PluginLoader"));
-async function loadPlugins(pluginDefinitions, args) {
-    const pluginLoader = new PluginLoader_1.default(pluginDefinitions, args);
-    pluginLoader.installGlobalReExports(window);
-    return pluginLoader.load('');
-}