@jbrowse/product-core 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/RootModel/BaseRootModel.d.ts +52 -37
- package/esm/RootModel/BaseRootModel.js +1 -1
- package/esm/RootModel/FormatAbout.d.ts +2 -2
- package/esm/RootModel/FormatDetails.d.ts +2 -2
- package/esm/RootModel/HierarchicalConfig.d.ts +6 -6
- package/esm/RootModel/InternetAccounts.d.ts +4 -4
- package/esm/RootModel/InternetAccounts.js +3 -3
- package/esm/RootModel/index.d.ts +5 -5
- package/esm/RootModel/index.js +5 -5
- package/esm/Session/BaseSession.d.ts +12 -8
- package/esm/Session/BaseSession.js +12 -2
- package/esm/Session/Connections.d.ts +7 -144
- package/esm/Session/Connections.js +13 -3
- package/esm/Session/DialogQueue.d.ts +3 -3
- package/esm/Session/DialogQueue.js +4 -6
- package/esm/Session/DrawerWidgets.d.ts +17 -9
- package/esm/Session/DrawerWidgets.js +32 -8
- package/esm/Session/MultipleViews.d.ts +189 -127
- package/esm/Session/MultipleViews.js +27 -10
- package/esm/Session/ReferenceManagement.d.ts +3 -3
- package/esm/Session/ReferenceManagement.js +10 -4
- package/esm/Session/SessionTracks.d.ts +178 -122
- package/esm/Session/SessionTracks.js +13 -3
- package/esm/Session/Themes.d.ts +3 -3
- package/esm/Session/Themes.js +3 -3
- package/esm/Session/Tracks.d.ts +175 -121
- package/esm/Session/Tracks.js +16 -3
- package/esm/Session/index.d.ts +10 -10
- package/esm/Session/index.js +10 -10
- package/esm/index.d.ts +4 -4
- package/esm/index.js +4 -4
- package/esm/rpcWorker.d.ts +6 -0
- package/esm/rpcWorker.js +12 -6
- package/esm/ui/AboutDialog.d.ts +4 -2
- package/esm/ui/AboutDialog.js +4 -5
- package/esm/ui/AboutDialogContents.d.ts +4 -2
- package/esm/ui/AboutDialogContents.js +13 -12
- package/esm/ui/FileInfoPanel.d.ts +4 -2
- package/esm/ui/FileInfoPanel.js +6 -7
- package/esm/ui/HeaderButtons.js +4 -4
- package/esm/ui/RefNameInfoDialog.d.ts +4 -2
- package/esm/ui/RefNameInfoDialog.js +13 -13
- package/esm/ui/index.d.ts +1 -1
- package/esm/ui/index.js +1 -1
- package/esm/ui/util.d.ts +5 -2
- package/esm/ui/util.js +23 -5
- package/package.json +24 -34
- package/dist/RootModel/BaseRootModel.d.ts +0 -534
- package/dist/RootModel/BaseRootModel.js +0 -57
- package/dist/RootModel/FormatAbout.d.ts +0 -12
- package/dist/RootModel/FormatAbout.js +0 -18
- package/dist/RootModel/FormatDetails.d.ts +0 -24
- package/dist/RootModel/FormatDetails.js +0 -30
- package/dist/RootModel/HierarchicalConfig.d.ts +0 -26
- package/dist/RootModel/HierarchicalConfig.js +0 -32
- package/dist/RootModel/InternetAccounts.d.ts +0 -15
- package/dist/RootModel/InternetAccounts.js +0 -79
- package/dist/RootModel/index.d.ts +0 -5
- package/dist/RootModel/index.js +0 -21
- package/dist/Session/BaseSession.d.ts +0 -31
- package/dist/Session/BaseSession.js +0 -63
- package/dist/Session/Connections.d.ts +0 -158
- package/dist/Session/Connections.js +0 -84
- package/dist/Session/DialogQueue.d.ts +0 -15
- package/dist/Session/DialogQueue.js +0 -37
- package/dist/Session/DrawerWidgets.d.ts +0 -28
- package/dist/Session/DrawerWidgets.js +0 -107
- package/dist/Session/MultipleViews.d.ts +0 -1681
- package/dist/Session/MultipleViews.js +0 -75
- package/dist/Session/ReferenceManagement.d.ts +0 -15
- package/dist/Session/ReferenceManagement.js +0 -71
- package/dist/Session/SessionTracks.d.ts +0 -1664
- package/dist/Session/SessionTracks.js +0 -54
- package/dist/Session/Themes.d.ts +0 -18
- package/dist/Session/Themes.js +0 -47
- package/dist/Session/Tracks.d.ts +0 -1657
- package/dist/Session/Tracks.js +0 -36
- package/dist/Session/index.d.ts +0 -10
- package/dist/Session/index.js +0 -26
- package/dist/index.d.ts +0 -4
- package/dist/index.js +0 -20
- package/dist/rpcWorker.d.ts +0 -6
- package/dist/rpcWorker.js +0 -57
- package/dist/ui/AboutDialog.d.ts +0 -5
- package/dist/ui/AboutDialog.js +0 -18
- package/dist/ui/AboutDialogContents.d.ts +0 -5
- package/dist/ui/AboutDialogContents.js +0 -41
- package/dist/ui/FileInfoPanel.d.ts +0 -4
- package/dist/ui/FileInfoPanel.js +0 -43
- package/dist/ui/HeaderButtons.d.ts +0 -6
- package/dist/ui/HeaderButtons.js +0 -31
- package/dist/ui/RefNameInfoDialog.d.ts +0 -6
- package/dist/ui/RefNameInfoDialog.js +0 -87
- package/dist/ui/index.d.ts +0 -1
- package/dist/ui/index.js +0 -17
- package/dist/ui/util.d.ts +0 -12
- package/dist/ui/util.js +0 -28
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.SessionTracksManagerSessionMixin = SessionTracksManagerSessionMixin;
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exports.isSessionWithSessionTracks = isSessionWithSessionTracks;
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const mobx_state_tree_1 = require("mobx-state-tree");
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const BaseSession_1 = require("./BaseSession");
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const Tracks_1 = require("./Tracks");
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function SessionTracksManagerSessionMixin(pluginManager) {
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return (0, Tracks_1.TracksManagerSessionMixin)(pluginManager)
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.named('SessionTracksManagerSessionMixin')
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.props({
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sessionTracks: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
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})
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.views(self => ({
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get tracks() {
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return [...self.sessionTracks, ...self.jbrowse.tracks];
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},
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}))
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.actions(self => {
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const { addTrackConf: superAddTrackConf, deleteTrackConf: superDeleteTrackConf, } = self;
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return {
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addTrackConf(trackConf) {
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if (self.adminMode) {
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return superAddTrackConf(trackConf);
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}
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const { trackId, type } = trackConf;
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if (!type) {
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throw new Error(`unknown track type ${type}`);
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}
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const track = self.sessionTracks.find(t => t.trackId === trackId);
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if (track) {
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return track;
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}
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const length = self.sessionTracks.push(trackConf);
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return self.sessionTracks[length - 1];
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},
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deleteTrackConf(trackConf) {
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const found = superDeleteTrackConf(trackConf);
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if (found) {
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return found;
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}
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const { trackId } = trackConf;
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const idx = self.sessionTracks.findIndex(t => t.trackId === trackId);
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if (idx === -1) {
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return undefined;
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}
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return self.sessionTracks.splice(idx, 1);
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},
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};
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});
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}
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function isSessionWithSessionTracks(thing) {
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return (0, BaseSession_1.isBaseSession)(thing) && 'sessionTracks' in thing;
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}
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package/dist/Session/Themes.d.ts
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import type PluginManager from '@jbrowse/core/PluginManager';
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import type { ThemeOptions } from '@mui/material';
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import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
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type ThemeMap = Record<string, ThemeOptions>;
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export declare function ThemeManagerSessionMixin(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
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sessionThemeName: string;
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} & {
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allThemes(): ThemeMap;
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readonly themeName: string;
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readonly theme: import("@mui/material").Theme;
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} & {
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setThemeName(name: string): void;
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afterAttach(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export type SessionWithThemesType = ReturnType<typeof ThemeManagerSessionMixin>;
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export type SessionWithThemes = Instance<SessionWithThemesType>;
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export declare function isSessionWithThemes(session: IAnyStateTreeNode): session is SessionWithThemes;
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export {};
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package/dist/Session/Themes.js
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.ThemeManagerSessionMixin = ThemeManagerSessionMixin;
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exports.isSessionWithThemes = isSessionWithThemes;
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const configuration_1 = require("@jbrowse/core/configuration");
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const ui_1 = require("@jbrowse/core/ui");
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const util_1 = require("@jbrowse/core/util");
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const mobx_1 = require("mobx");
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const mobx_state_tree_1 = require("mobx-state-tree");
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function ThemeManagerSessionMixin(_pluginManager) {
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return mobx_state_tree_1.types
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.model({})
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.volatile(() => ({
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sessionThemeName: (0, util_1.localStorageGetItem)('themeName') || 'default',
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}))
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.views(s => ({
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allThemes() {
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const self = s;
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const extraThemes = (0, configuration_1.getConf)(self.jbrowse, 'extraThemes');
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return { ...ui_1.defaultThemes, ...extraThemes };
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},
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get themeName() {
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const { sessionThemeName } = s;
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const all = this.allThemes();
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return all[sessionThemeName] ? sessionThemeName : 'default';
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},
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get theme() {
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const self = s;
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const configTheme = (0, configuration_1.getConf)(self.jbrowse, 'theme');
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const all = this.allThemes();
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return (0, ui_1.createJBrowseTheme)(configTheme, all, this.themeName);
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},
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}))
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.actions(self => ({
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setThemeName(name) {
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self.sessionThemeName = name;
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},
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afterAttach() {
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(0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
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(0, util_1.localStorageSetItem)('themeName', self.themeName);
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}));
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},
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}));
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}
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function isSessionWithThemes(session) {
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return 'theme' in session;
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}
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