@jbrowse/product-core 3.7.0 → 4.0.0

package/dist/Session/MultipleViews.js

@@ -1,75 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MultipleViewsSessionMixin = MultipleViewsSessionMixin;
-exports.isSessionWithMultipleViews = isSessionWithMultipleViews;
-const util_1 = require("@jbrowse/core/util");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const BaseSession_1 = require("./BaseSession");
-const DrawerWidgets_1 = require("./DrawerWidgets");
-function MultipleViewsSessionMixin(pluginManager) {
-    return mobx_state_tree_1.types
-        .compose((0, BaseSession_1.BaseSessionModel)(pluginManager), (0, DrawerWidgets_1.DrawerWidgetSessionMixin)(pluginManager))
-        .props({
-        views: mobx_state_tree_1.types.array(pluginManager.pluggableMstType('view', 'stateModel')),
-        stickyViewHeaders: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => (0, util_1.localStorageGetBoolean)('stickyViewHeaders', true)),
-    })
-        .actions(self => ({
-        moveViewDown(id) {
-            const idx = self.views.findIndex(v => v.id === id);
-            if (idx !== -1 && idx < self.views.length - 1) {
-                self.views.splice(idx, 2, self.views[idx + 1], self.views[idx]);
-            }
-        },
-        moveViewUp(id) {
-            const idx = self.views.findIndex(view => view.id === id);
-            if (idx > 0) {
-                self.views.splice(idx - 1, 2, self.views[idx], self.views[idx - 1]);
-            }
-        },
-        moveViewToTop(id) {
-            const idx = self.views.findIndex(view => view.id === id);
-            self.views = (0, mobx_state_tree_1.cast)([
-                self.views[idx],
-                ...self.views.filter(view => view.id !== id),
-            ]);
-        },
-        moveViewToBottom(id) {
-            const idx = self.views.findIndex(view => view.id === id);
-            self.views = (0, mobx_state_tree_1.cast)([
-                ...self.views.filter(view => view.id !== id),
-                self.views[idx],
-            ]);
-        },
-        addView(typeName, initialState = {}) {
-            const typeDefinition = pluginManager.getElementType('view', typeName);
-            if (!typeDefinition) {
-                throw new Error(`unknown view type ${typeName}`);
-            }
-            const length = self.views.push({
-                ...initialState,
-                type: typeName,
-            });
-            return self.views[length - 1];
-        },
-        removeView(view) {
-            for (const [, widget] of self.activeWidgets) {
-                if (widget.view && widget.view.id === view.id) {
-                    self.hideWidget(widget);
-                }
-            }
-            self.views.remove(view);
-        },
-        setStickyViewHeaders(sticky) {
-            self.stickyViewHeaders = sticky;
-        },
-        afterAttach() {
-            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                (0, util_1.localStorageSetBoolean)('stickyViewHeaders', self.stickyViewHeaders);
-            }));
-        },
-    }));
-}
-function isSessionWithMultipleViews(session) {
-    return (0, BaseSession_1.isBaseSession)(session) && 'views' in session;
-}

package/dist/Session/ReferenceManagement.d.ts

@@ -1,15 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
-import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
-export interface ReferringNode {
-    node: IAnyStateTreeNode;
-    key: string;
-}
-export declare function ReferenceManagementSessionMixin(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
-    getReferring(object: IAnyStateTreeNode): ReferringNode[];
-} & {
-    removeReferring(referring: ReferringNode[], track: BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type SessionWithReferenceManagementType = ReturnType<typeof ReferenceManagementSessionMixin>;
-export type SessionWithReferenceManagement = Instance<SessionWithReferenceManagementType>;
-export declare function isSessionWithReferenceManagement(thing: IAnyStateTreeNode): thing is SessionWithReferenceManagement;

package/dist/Session/ReferenceManagement.js

@@ -1,71 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ReferenceManagementSessionMixin = ReferenceManagementSessionMixin;
-exports.isSessionWithReferenceManagement = isSessionWithReferenceManagement;
-const util_1 = require("@jbrowse/core/util");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const BaseSession_1 = require("./BaseSession");
-function ReferenceManagementSessionMixin(_pluginManager) {
-    return mobx_state_tree_1.types
-        .model('ReferenceManagementSessionMixin', {})
-        .views(self => ({
-        getReferring(object) {
-            const refs = [];
-            (0, mobx_state_tree_1.walk)((0, mobx_state_tree_1.getParent)(self), node => {
-                if ((0, mobx_state_tree_1.isModelType)((0, mobx_state_tree_1.getType)(node))) {
-                    const members = (0, mobx_state_tree_1.getMembers)(node);
-                    for (const [key, value] of Object.entries(members.properties)) {
-                        if ((0, mobx_state_tree_1.isReferenceType)(value) && node[key] === object) {
-                            refs.push({ node, key });
-                        }
-                    }
-                }
-            });
-            return refs;
-        },
-    }))
-        .actions(self => ({
-        removeReferring(referring, track, callbacks, dereferenceTypeCount) {
-            for (const { node } of referring) {
-                let dereferenced = false;
-                try {
-                    const type = 'open track(s)';
-                    const view = (0, util_1.getContainingView)(node);
-                    callbacks.push(() => {
-                        view.hideTrack(track.trackId);
-                    });
-                    dereferenced = true;
-                    if (!dereferenceTypeCount[type]) {
-                        dereferenceTypeCount[type] = 0;
-                    }
-                    dereferenceTypeCount[type] += 1;
-                }
-                catch (err1) {
-                }
-                if ((0, util_1.isSessionModelWithWidgets)(self) && self.widgets.has(node.id)) {
-                    const type = 'configuration editor widget(s)';
-                    if ((0, util_1.isSessionModelWithWidgets)(self)) {
-                        callbacks.push(() => {
-                            self.hideWidget(node);
-                        });
-                    }
-                    dereferenced = true;
-                    if (!dereferenceTypeCount[type]) {
-                        dereferenceTypeCount[type] = 0;
-                    }
-                    dereferenceTypeCount[type] += 1;
-                }
-                if (!dereferenced) {
-                    throw new Error(`Error when closing this connection, the following node is still referring to a track configuration: ${JSON.stringify((0, mobx_state_tree_1.getSnapshot)(node))}`);
-                }
-            }
-        },
-    }));
-}
-function isSessionWithReferenceManagement(thing) {
-    return ((0, BaseSession_1.isBaseSession)(thing) &&
-        'getReferring' in thing &&
-        typeof thing.getReferring === 'function' &&
-        'removeReferring' in thing &&
-        typeof thing.removeReferring === 'function');
-}