@jbrowse/product-core 2.9.0 → 2.10.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/RootModel/BaseRootModel.d.ts +102 -56
- package/dist/Session/BaseSession.d.ts +11 -3
- package/dist/Session/BaseSession.js +5 -1
- package/dist/Session/MultipleViews.d.ts +301 -110
- package/dist/Session/MultipleViews.js +3 -0
- package/dist/Session/SessionTracks.d.ts +285 -117
- package/dist/Session/Tracks.d.ts +304 -98
- package/esm/RootModel/BaseRootModel.d.ts +102 -56
- package/esm/Session/BaseSession.d.ts +11 -3
- package/esm/Session/BaseSession.js +5 -1
- package/esm/Session/MultipleViews.d.ts +301 -110
- package/esm/Session/MultipleViews.js +3 -0
- package/esm/Session/SessionTracks.d.ts +285 -117
- package/esm/Session/Tracks.d.ts +304 -98
- package/package.json +3 -3
package/dist/Session/Tracks.d.ts
CHANGED
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@@ -29,7 +29,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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refNameAliases: {
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[x: string]: string | undefined;
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} | undefined;
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} | undefined; /**
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* #action
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*/
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lowerCaseRefNameAliases: {
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[x: string]: string | undefined;
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} | undefined;
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@@ -48,7 +50,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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readonly lowerCaseRefNames: string[] | undefined;
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readonly allRefNamesWithLowerCase: string[] | undefined;
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readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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readonly refNameColors: string[];
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readonly refNameColors: string[];
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} & {
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readonly refNames: string[] | undefined;
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} & {
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@@ -69,11 +71,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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@@ -85,7 +93,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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refNameAliases: {
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[x: string]: string | undefined;
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} | undefined;
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} | undefined; /**
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* #action
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*/
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lowerCaseRefNameAliases: {
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[x: string]: string | undefined;
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} | undefined;
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@@ -104,7 +114,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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readonly lowerCaseRefNames: string[] | undefined;
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readonly allRefNamesWithLowerCase: string[] | undefined;
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readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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readonly refNameColors: string[];
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readonly refNameColors: string[];
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} & {
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readonly refNames: string[] | undefined;
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} & {
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@@ -125,11 +135,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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@@ -183,11 +199,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -239,11 +261,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -353,11 +387,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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} & {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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} & {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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}, assemblyName: string | undefined, opts: {
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}): Promise<{
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} | undefined>;
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}): Promise<{
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removeAssembly(asm: {
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configuration: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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} & {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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}, {
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} & {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
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607
679
|
[x: string]: string | undefined;
|
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608
680
|
}>;
|
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609
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
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681
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
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682
|
+
[x: string]: unknown;
|
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683
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
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610
684
|
[x: string]: string | undefined;
|
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611
685
|
}>;
|
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612
686
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
@@ -622,7 +696,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
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|
622
696
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
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623
697
|
refNameAliases: {
|
|
624
698
|
[x: string]: string | undefined;
|
|
625
|
-
} | undefined;
|
|
699
|
+
} | undefined; /**
|
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|
+
* #action
|
|
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|
+
*/
|
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626
702
|
lowerCaseRefNameAliases: {
|
|
627
703
|
[x: string]: string | undefined;
|
|
628
704
|
} | undefined;
|
|
@@ -641,7 +717,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
641
717
|
readonly lowerCaseRefNames: string[] | undefined;
|
|
642
718
|
readonly allRefNamesWithLowerCase: string[] | undefined;
|
|
643
719
|
readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
|
|
644
|
-
readonly refNameColors: string[];
|
|
720
|
+
readonly refNameColors: string[];
|
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645
721
|
} & {
|
|
646
722
|
readonly refNames: string[] | undefined;
|
|
647
723
|
} & {
|
|
@@ -662,11 +738,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
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|
662
738
|
load(): Promise<void>;
|
|
663
739
|
loadPre(): Promise<void>;
|
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664
740
|
} & {
|
|
665
|
-
getAdapterMapEntry(adapterConf:
|
|
666
|
-
|
|
741
|
+
getAdapterMapEntry(adapterConf: {
|
|
742
|
+
[x: string]: unknown;
|
|
743
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
744
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
745
|
+
[x: string]: unknown;
|
|
746
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
667
747
|
[x: string]: string | undefined;
|
|
668
748
|
}>;
|
|
669
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
749
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
750
|
+
[x: string]: unknown;
|
|
751
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
670
752
|
[x: string]: string | undefined;
|
|
671
753
|
}>;
|
|
672
754
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -720,11 +802,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
720
802
|
load(): Promise<void>;
|
|
721
803
|
loadPre(): Promise<void>;
|
|
722
804
|
} & {
|
|
723
|
-
getAdapterMapEntry(adapterConf:
|
|
724
|
-
|
|
805
|
+
getAdapterMapEntry(adapterConf: {
|
|
806
|
+
[x: string]: unknown;
|
|
807
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
808
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
809
|
+
[x: string]: unknown;
|
|
810
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
725
811
|
[x: string]: string | undefined;
|
|
726
812
|
}>;
|
|
727
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
813
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
814
|
+
[x: string]: unknown;
|
|
815
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
728
816
|
[x: string]: string | undefined;
|
|
729
817
|
}>;
|
|
730
818
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -776,11 +864,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
776
864
|
load(): Promise<void>;
|
|
777
865
|
loadPre(): Promise<void>;
|
|
778
866
|
} & {
|
|
779
|
-
getAdapterMapEntry(adapterConf:
|
|
780
|
-
|
|
867
|
+
getAdapterMapEntry(adapterConf: {
|
|
868
|
+
[x: string]: unknown;
|
|
869
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
870
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
871
|
+
[x: string]: unknown;
|
|
872
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
781
873
|
[x: string]: string | undefined;
|
|
782
874
|
}>;
|
|
783
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
875
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
876
|
+
[x: string]: unknown;
|
|
877
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
784
878
|
[x: string]: string | undefined;
|
|
785
879
|
}>;
|
|
786
880
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -834,11 +928,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
834
928
|
load(): Promise<void>;
|
|
835
929
|
loadPre(): Promise<void>;
|
|
836
930
|
} & {
|
|
837
|
-
getAdapterMapEntry(adapterConf:
|
|
838
|
-
|
|
931
|
+
getAdapterMapEntry(adapterConf: {
|
|
932
|
+
[x: string]: unknown;
|
|
933
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
934
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
935
|
+
[x: string]: unknown;
|
|
936
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
839
937
|
[x: string]: string | undefined;
|
|
840
938
|
}>;
|
|
841
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
939
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
940
|
+
[x: string]: unknown;
|
|
941
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
842
942
|
[x: string]: string | undefined;
|
|
843
943
|
}>;
|
|
844
944
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -890,11 +990,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
890
990
|
load(): Promise<void>;
|
|
891
991
|
loadPre(): Promise<void>;
|
|
892
992
|
} & {
|
|
893
|
-
getAdapterMapEntry(adapterConf:
|
|
894
|
-
|
|
993
|
+
getAdapterMapEntry(adapterConf: {
|
|
994
|
+
[x: string]: unknown;
|
|
995
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
996
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
997
|
+
[x: string]: unknown;
|
|
998
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
895
999
|
[x: string]: string | undefined;
|
|
896
1000
|
}>;
|
|
897
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1001
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1002
|
+
[x: string]: unknown;
|
|
1003
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
898
1004
|
[x: string]: string | undefined;
|
|
899
1005
|
}>;
|
|
900
1006
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -955,11 +1061,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
955
1061
|
load(): Promise<void>;
|
|
956
1062
|
loadPre(): Promise<void>;
|
|
957
1063
|
} & {
|
|
958
|
-
getAdapterMapEntry(adapterConf:
|
|
959
|
-
|
|
1064
|
+
getAdapterMapEntry(adapterConf: {
|
|
1065
|
+
[x: string]: unknown;
|
|
1066
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1067
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1068
|
+
[x: string]: unknown;
|
|
1069
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
960
1070
|
[x: string]: string | undefined;
|
|
961
1071
|
}>;
|
|
962
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1072
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1073
|
+
[x: string]: unknown;
|
|
1074
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
963
1075
|
[x: string]: string | undefined;
|
|
964
1076
|
}>;
|
|
965
1077
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1011,21 +1123,31 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1011
1123
|
load(): Promise<void>;
|
|
1012
1124
|
loadPre(): Promise<void>;
|
|
1013
1125
|
} & {
|
|
1014
|
-
getAdapterMapEntry(adapterConf:
|
|
1015
|
-
|
|
1126
|
+
getAdapterMapEntry(adapterConf: {
|
|
1127
|
+
[x: string]: unknown;
|
|
1128
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1129
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1130
|
+
[x: string]: unknown;
|
|
1131
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1016
1132
|
[x: string]: string | undefined;
|
|
1017
1133
|
}>;
|
|
1018
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1134
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1135
|
+
[x: string]: unknown;
|
|
1136
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1019
1137
|
[x: string]: string | undefined;
|
|
1020
1138
|
}>;
|
|
1021
1139
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1022
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1140
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1141
|
+
[x: string]: unknown;
|
|
1142
|
+
}, assemblyName: string | undefined, opts: {
|
|
1023
1143
|
signal?: AbortSignal | undefined;
|
|
1024
1144
|
sessionId: string;
|
|
1025
1145
|
}): Promise<{
|
|
1026
1146
|
[x: string]: string | undefined;
|
|
1027
1147
|
} | undefined>;
|
|
1028
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1148
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1149
|
+
[x: string]: unknown;
|
|
1150
|
+
}, assemblyName: string | undefined, opts: {
|
|
1029
1151
|
signal?: AbortSignal | undefined;
|
|
1030
1152
|
sessionId: string;
|
|
1031
1153
|
}): Promise<{
|
|
@@ -1037,6 +1159,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1037
1159
|
removeAssembly(asm: {
|
|
1038
1160
|
configuration: any;
|
|
1039
1161
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1162
|
+
/**
|
|
1163
|
+
* #action
|
|
1164
|
+
*/
|
|
1040
1165
|
error: unknown;
|
|
1041
1166
|
loaded: boolean;
|
|
1042
1167
|
loadingP: Promise<void> | undefined;
|
|
@@ -1083,16 +1208,25 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1083
1208
|
load(): Promise<void>;
|
|
1084
1209
|
loadPre(): Promise<void>;
|
|
1085
1210
|
} & {
|
|
1086
|
-
getAdapterMapEntry(adapterConf:
|
|
1087
|
-
|
|
1211
|
+
getAdapterMapEntry(adapterConf: {
|
|
1212
|
+
[x: string]: unknown;
|
|
1213
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1214
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1215
|
+
[x: string]: unknown;
|
|
1216
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1088
1217
|
[x: string]: string | undefined;
|
|
1089
1218
|
}>;
|
|
1090
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1219
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1220
|
+
[x: string]: unknown;
|
|
1221
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1091
1222
|
[x: string]: string | undefined;
|
|
1092
1223
|
}>;
|
|
1093
1224
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1094
1225
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1095
1226
|
}, {
|
|
1227
|
+
/**
|
|
1228
|
+
* #action
|
|
1229
|
+
*/
|
|
1096
1230
|
error: unknown;
|
|
1097
1231
|
loaded: boolean;
|
|
1098
1232
|
loadingP: Promise<void> | undefined;
|
|
@@ -1139,11 +1273,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1139
1273
|
load(): Promise<void>;
|
|
1140
1274
|
loadPre(): Promise<void>;
|
|
1141
1275
|
} & {
|
|
1142
|
-
getAdapterMapEntry(adapterConf:
|
|
1143
|
-
|
|
1276
|
+
getAdapterMapEntry(adapterConf: {
|
|
1277
|
+
[x: string]: unknown;
|
|
1278
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1279
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1280
|
+
[x: string]: unknown;
|
|
1281
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1144
1282
|
[x: string]: string | undefined;
|
|
1145
1283
|
}>;
|
|
1146
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1284
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1285
|
+
[x: string]: unknown;
|
|
1286
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1147
1287
|
[x: string]: string | undefined;
|
|
1148
1288
|
}>;
|
|
1149
1289
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
@@ -1179,7 +1319,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1179
1319
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1180
1320
|
refNameAliases: {
|
|
1181
1321
|
[x: string]: string | undefined;
|
|
1182
|
-
} | undefined;
|
|
1322
|
+
} | undefined; /**
|
|
1323
|
+
* #action
|
|
1324
|
+
*/
|
|
1183
1325
|
lowerCaseRefNameAliases: {
|
|
1184
1326
|
[x: string]: string | undefined;
|
|
1185
1327
|
} | undefined;
|
|
@@ -1198,7 +1340,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1198
1340
|
readonly lowerCaseRefNames: string[] | undefined;
|
|
1199
1341
|
readonly allRefNamesWithLowerCase: string[] | undefined;
|
|
1200
1342
|
readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
|
|
1201
|
-
readonly refNameColors: string[];
|
|
1343
|
+
readonly refNameColors: string[];
|
|
1202
1344
|
} & {
|
|
1203
1345
|
readonly refNames: string[] | undefined;
|
|
1204
1346
|
} & {
|
|
@@ -1219,11 +1361,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1219
1361
|
load(): Promise<void>;
|
|
1220
1362
|
loadPre(): Promise<void>;
|
|
1221
1363
|
} & {
|
|
1222
|
-
getAdapterMapEntry(adapterConf:
|
|
1223
|
-
|
|
1364
|
+
getAdapterMapEntry(adapterConf: {
|
|
1365
|
+
[x: string]: unknown;
|
|
1366
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1367
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1368
|
+
[x: string]: unknown;
|
|
1369
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1224
1370
|
[x: string]: string | undefined;
|
|
1225
1371
|
}>;
|
|
1226
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1372
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1373
|
+
[x: string]: unknown;
|
|
1374
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1227
1375
|
[x: string]: string | undefined;
|
|
1228
1376
|
}>;
|
|
1229
1377
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -1277,11 +1425,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1277
1425
|
load(): Promise<void>;
|
|
1278
1426
|
loadPre(): Promise<void>;
|
|
1279
1427
|
} & {
|
|
1280
|
-
getAdapterMapEntry(adapterConf:
|
|
1281
|
-
|
|
1428
|
+
getAdapterMapEntry(adapterConf: {
|
|
1429
|
+
[x: string]: unknown;
|
|
1430
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1431
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1432
|
+
[x: string]: unknown;
|
|
1433
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1282
1434
|
[x: string]: string | undefined;
|
|
1283
1435
|
}>;
|
|
1284
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1436
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1437
|
+
[x: string]: unknown;
|
|
1438
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1285
1439
|
[x: string]: string | undefined;
|
|
1286
1440
|
}>;
|
|
1287
1441
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1333,11 +1487,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1333
1487
|
load(): Promise<void>;
|
|
1334
1488
|
loadPre(): Promise<void>;
|
|
1335
1489
|
} & {
|
|
1336
|
-
getAdapterMapEntry(adapterConf:
|
|
1337
|
-
|
|
1490
|
+
getAdapterMapEntry(adapterConf: {
|
|
1491
|
+
[x: string]: unknown;
|
|
1492
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1493
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1494
|
+
[x: string]: unknown;
|
|
1495
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1338
1496
|
[x: string]: string | undefined;
|
|
1339
1497
|
}>;
|
|
1340
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1498
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1499
|
+
[x: string]: unknown;
|
|
1500
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1341
1501
|
[x: string]: string | undefined;
|
|
1342
1502
|
}>;
|
|
1343
1503
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1391,11 +1551,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1391
1551
|
load(): Promise<void>;
|
|
1392
1552
|
loadPre(): Promise<void>;
|
|
1393
1553
|
} & {
|
|
1394
|
-
getAdapterMapEntry(adapterConf:
|
|
1395
|
-
|
|
1554
|
+
getAdapterMapEntry(adapterConf: {
|
|
1555
|
+
[x: string]: unknown;
|
|
1556
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1557
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1558
|
+
[x: string]: unknown;
|
|
1559
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1396
1560
|
[x: string]: string | undefined;
|
|
1397
1561
|
}>;
|
|
1398
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1562
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1563
|
+
[x: string]: unknown;
|
|
1564
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1399
1565
|
[x: string]: string | undefined;
|
|
1400
1566
|
}>;
|
|
1401
1567
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1447,11 +1613,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1447
1613
|
load(): Promise<void>;
|
|
1448
1614
|
loadPre(): Promise<void>;
|
|
1449
1615
|
} & {
|
|
1450
|
-
getAdapterMapEntry(adapterConf:
|
|
1451
|
-
|
|
1616
|
+
getAdapterMapEntry(adapterConf: {
|
|
1617
|
+
[x: string]: unknown;
|
|
1618
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1619
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1620
|
+
[x: string]: unknown;
|
|
1621
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1452
1622
|
[x: string]: string | undefined;
|
|
1453
1623
|
}>;
|
|
1454
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1624
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1625
|
+
[x: string]: unknown;
|
|
1626
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1455
1627
|
[x: string]: string | undefined;
|
|
1456
1628
|
}>;
|
|
1457
1629
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1512,11 +1684,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1512
1684
|
load(): Promise<void>;
|
|
1513
1685
|
loadPre(): Promise<void>;
|
|
1514
1686
|
} & {
|
|
1515
|
-
getAdapterMapEntry(adapterConf:
|
|
1516
|
-
|
|
1687
|
+
getAdapterMapEntry(adapterConf: {
|
|
1688
|
+
[x: string]: unknown;
|
|
1689
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1690
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1691
|
+
[x: string]: unknown;
|
|
1692
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1517
1693
|
[x: string]: string | undefined;
|
|
1518
1694
|
}>;
|
|
1519
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1695
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1696
|
+
[x: string]: unknown;
|
|
1697
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1520
1698
|
[x: string]: string | undefined;
|
|
1521
1699
|
}>;
|
|
1522
1700
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1568,21 +1746,31 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1568
1746
|
load(): Promise<void>;
|
|
1569
1747
|
loadPre(): Promise<void>;
|
|
1570
1748
|
} & {
|
|
1571
|
-
getAdapterMapEntry(adapterConf:
|
|
1572
|
-
|
|
1749
|
+
getAdapterMapEntry(adapterConf: {
|
|
1750
|
+
[x: string]: unknown;
|
|
1751
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1752
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1753
|
+
[x: string]: unknown;
|
|
1754
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1573
1755
|
[x: string]: string | undefined;
|
|
1574
1756
|
}>;
|
|
1575
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1757
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1758
|
+
[x: string]: unknown;
|
|
1759
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1576
1760
|
[x: string]: string | undefined;
|
|
1577
1761
|
}>;
|
|
1578
1762
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1579
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1763
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1764
|
+
[x: string]: unknown;
|
|
1765
|
+
}, assemblyName: string | undefined, opts: {
|
|
1580
1766
|
signal?: AbortSignal | undefined;
|
|
1581
1767
|
sessionId: string;
|
|
1582
1768
|
}): Promise<{
|
|
1583
1769
|
[x: string]: string | undefined;
|
|
1584
1770
|
} | undefined>;
|
|
1585
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1771
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1772
|
+
[x: string]: unknown;
|
|
1773
|
+
}, assemblyName: string | undefined, opts: {
|
|
1586
1774
|
signal?: AbortSignal | undefined;
|
|
1587
1775
|
sessionId: string;
|
|
1588
1776
|
}): Promise<{
|
|
@@ -1594,6 +1782,9 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1594
1782
|
removeAssembly(asm: {
|
|
1595
1783
|
configuration: any;
|
|
1596
1784
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1785
|
+
/**
|
|
1786
|
+
* #action
|
|
1787
|
+
*/
|
|
1597
1788
|
error: unknown;
|
|
1598
1789
|
loaded: boolean;
|
|
1599
1790
|
loadingP: Promise<void> | undefined;
|
|
@@ -1640,16 +1831,25 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1640
1831
|
load(): Promise<void>;
|
|
1641
1832
|
loadPre(): Promise<void>;
|
|
1642
1833
|
} & {
|
|
1643
|
-
getAdapterMapEntry(adapterConf:
|
|
1644
|
-
|
|
1834
|
+
getAdapterMapEntry(adapterConf: {
|
|
1835
|
+
[x: string]: unknown;
|
|
1836
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1837
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1838
|
+
[x: string]: unknown;
|
|
1839
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1645
1840
|
[x: string]: string | undefined;
|
|
1646
1841
|
}>;
|
|
1647
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1842
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1843
|
+
[x: string]: unknown;
|
|
1844
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1648
1845
|
[x: string]: string | undefined;
|
|
1649
1846
|
}>;
|
|
1650
1847
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1651
1848
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1652
1849
|
}, {
|
|
1850
|
+
/**
|
|
1851
|
+
* #action
|
|
1852
|
+
*/
|
|
1653
1853
|
error: unknown;
|
|
1654
1854
|
loaded: boolean;
|
|
1655
1855
|
loadingP: Promise<void> | undefined;
|
|
@@ -1696,11 +1896,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
|
|
|
1696
1896
|
load(): Promise<void>;
|
|
1697
1897
|
loadPre(): Promise<void>;
|
|
1698
1898
|
} & {
|
|
1699
|
-
getAdapterMapEntry(adapterConf:
|
|
1700
|
-
|
|
1899
|
+
getAdapterMapEntry(adapterConf: {
|
|
1900
|
+
[x: string]: unknown;
|
|
1901
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1902
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1903
|
+
[x: string]: unknown;
|
|
1904
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1701
1905
|
[x: string]: string | undefined;
|
|
1702
1906
|
}>;
|
|
1703
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1907
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1908
|
+
[x: string]: unknown;
|
|
1909
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1704
1910
|
[x: string]: string | undefined;
|
|
1705
1911
|
}>;
|
|
1706
1912
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|