@jbrowse/product-core 2.9.0 → 2.10.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/RootModel/BaseRootModel.d.ts +102 -56
- package/dist/Session/BaseSession.d.ts +11 -3
- package/dist/Session/BaseSession.js +5 -1
- package/dist/Session/MultipleViews.d.ts +301 -110
- package/dist/Session/MultipleViews.js +3 -0
- package/dist/Session/SessionTracks.d.ts +285 -117
- package/dist/Session/Tracks.d.ts +304 -98
- package/esm/RootModel/BaseRootModel.d.ts +102 -56
- package/esm/Session/BaseSession.d.ts +11 -3
- package/esm/Session/BaseSession.js +5 -1
- package/esm/Session/MultipleViews.d.ts +301 -110
- package/esm/Session/MultipleViews.js +3 -0
- package/esm/Session/SessionTracks.d.ts +285 -117
- package/esm/Session/Tracks.d.ts +304 -98
- package/package.json +3 -3
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@@ -5,6 +5,9 @@ import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes';
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import { IBaseViewModelWithDisplayedRegions } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
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/**
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* #stateModel MultipleViewsSessionMixin
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* composed of
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* - [BaseSessionModel](../basesessionmodel)
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* - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
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*/
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export declare function MultipleViewsSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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@@ -36,7 +39,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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error: unknown;
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loaded: boolean;
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loadingP: Promise<void> | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined; /**
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* #property
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*/
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refNameAliases: {
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[x: string]: string | undefined;
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} | undefined;
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} & {
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readonly refNames: string[] | undefined;
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} & {
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getCanonicalRefName(refName: string): string | undefined;
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getCanonicalRefName(refName: string): string | undefined; /**
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* #action
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*/
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getRefNameColor(refName: string): string | undefined;
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isValidRefName(refName: string): boolean;
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} & {
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@@ -79,22 +86,28 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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* #action
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*/
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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}, {
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loaded: boolean;
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loadingP: Promise<void> | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined; /**
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* #property
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*/
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refNameAliases: {
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} | undefined;
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} & {
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readonly refNames: string[] | undefined;
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} & {
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getCanonicalRefName(refName: string): string | undefined;
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getCanonicalRefName(refName: string): string | undefined; /**
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* #action
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*/
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getRefNameColor(refName: string): string | undefined;
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isValidRefName(refName: string): boolean;
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} & {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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* #action
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*/
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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readonly assemblyNameMap: Record<string, ({
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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getAdapterMapEntry(adapterConf: {
|
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685
|
+
[x: string]: unknown;
|
|
686
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
687
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
688
|
+
[x: string]: unknown;
|
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689
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
621
690
|
[x: string]: string | undefined;
|
|
622
691
|
}>;
|
|
623
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
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692
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
693
|
+
[x: string]: unknown;
|
|
694
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
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624
695
|
[x: string]: string | undefined;
|
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625
696
|
}>;
|
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626
697
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
@@ -633,7 +704,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
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|
633
704
|
error: unknown;
|
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634
705
|
loaded: boolean;
|
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635
706
|
loadingP: Promise<void> | undefined;
|
|
636
|
-
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
707
|
+
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined; /**
|
|
708
|
+
* #property
|
|
709
|
+
*/
|
|
637
710
|
refNameAliases: {
|
|
638
711
|
[x: string]: string | undefined;
|
|
639
712
|
} | undefined;
|
|
@@ -659,7 +732,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
659
732
|
} & {
|
|
660
733
|
readonly refNames: string[] | undefined;
|
|
661
734
|
} & {
|
|
662
|
-
getCanonicalRefName(refName: string): string | undefined;
|
|
735
|
+
getCanonicalRefName(refName: string): string | undefined; /**
|
|
736
|
+
* #action
|
|
737
|
+
*/
|
|
663
738
|
getRefNameColor(refName: string): string | undefined;
|
|
664
739
|
isValidRefName(refName: string): boolean;
|
|
665
740
|
} & {
|
|
@@ -676,15 +751,19 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
676
751
|
load(): Promise<void>;
|
|
677
752
|
loadPre(): Promise<void>;
|
|
678
753
|
} & {
|
|
679
|
-
getAdapterMapEntry(adapterConf:
|
|
680
|
-
|
|
754
|
+
getAdapterMapEntry(adapterConf: {
|
|
755
|
+
[x: string]: unknown;
|
|
756
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
757
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
758
|
+
[x: string]: unknown;
|
|
759
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
681
760
|
[x: string]: string | undefined;
|
|
682
761
|
}>;
|
|
683
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
762
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
763
|
+
[x: string]: unknown;
|
|
764
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
684
765
|
[x: string]: string | undefined;
|
|
685
|
-
}>;
|
|
686
|
-
* #action
|
|
687
|
-
*/
|
|
766
|
+
}>;
|
|
688
767
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
689
768
|
}, {
|
|
690
769
|
readonly assemblyNameMap: Record<string, ({
|
|
@@ -736,11 +815,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
736
815
|
load(): Promise<void>;
|
|
737
816
|
loadPre(): Promise<void>;
|
|
738
817
|
} & {
|
|
739
|
-
getAdapterMapEntry(adapterConf:
|
|
740
|
-
|
|
818
|
+
getAdapterMapEntry(adapterConf: {
|
|
819
|
+
[x: string]: unknown;
|
|
820
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
821
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
822
|
+
[x: string]: unknown;
|
|
823
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
741
824
|
[x: string]: string | undefined;
|
|
742
825
|
}>;
|
|
743
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
826
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
827
|
+
[x: string]: unknown;
|
|
828
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
744
829
|
[x: string]: string | undefined;
|
|
745
830
|
}>;
|
|
746
831
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -792,11 +877,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
792
877
|
load(): Promise<void>;
|
|
793
878
|
loadPre(): Promise<void>;
|
|
794
879
|
} & {
|
|
795
|
-
getAdapterMapEntry(adapterConf:
|
|
796
|
-
|
|
880
|
+
getAdapterMapEntry(adapterConf: {
|
|
881
|
+
[x: string]: unknown;
|
|
882
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
883
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
884
|
+
[x: string]: unknown;
|
|
885
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
797
886
|
[x: string]: string | undefined;
|
|
798
887
|
}>;
|
|
799
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
888
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
889
|
+
[x: string]: unknown;
|
|
890
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
800
891
|
[x: string]: string | undefined;
|
|
801
892
|
}>;
|
|
802
893
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -850,11 +941,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
850
941
|
load(): Promise<void>;
|
|
851
942
|
loadPre(): Promise<void>;
|
|
852
943
|
} & {
|
|
853
|
-
getAdapterMapEntry(adapterConf:
|
|
854
|
-
|
|
944
|
+
getAdapterMapEntry(adapterConf: {
|
|
945
|
+
[x: string]: unknown;
|
|
946
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
947
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
948
|
+
[x: string]: unknown;
|
|
949
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
855
950
|
[x: string]: string | undefined;
|
|
856
951
|
}>;
|
|
857
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
952
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
953
|
+
[x: string]: unknown;
|
|
954
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
858
955
|
[x: string]: string | undefined;
|
|
859
956
|
}>;
|
|
860
957
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -906,11 +1003,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
906
1003
|
load(): Promise<void>;
|
|
907
1004
|
loadPre(): Promise<void>;
|
|
908
1005
|
} & {
|
|
909
|
-
getAdapterMapEntry(adapterConf:
|
|
910
|
-
|
|
1006
|
+
getAdapterMapEntry(adapterConf: {
|
|
1007
|
+
[x: string]: unknown;
|
|
1008
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1009
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1010
|
+
[x: string]: unknown;
|
|
1011
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
911
1012
|
[x: string]: string | undefined;
|
|
912
1013
|
}>;
|
|
913
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1014
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1015
|
+
[x: string]: unknown;
|
|
1016
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
914
1017
|
[x: string]: string | undefined;
|
|
915
1018
|
}>;
|
|
916
1019
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -971,11 +1074,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
971
1074
|
load(): Promise<void>;
|
|
972
1075
|
loadPre(): Promise<void>;
|
|
973
1076
|
} & {
|
|
974
|
-
getAdapterMapEntry(adapterConf:
|
|
975
|
-
|
|
1077
|
+
getAdapterMapEntry(adapterConf: {
|
|
1078
|
+
[x: string]: unknown;
|
|
1079
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1080
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1081
|
+
[x: string]: unknown;
|
|
1082
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
976
1083
|
[x: string]: string | undefined;
|
|
977
1084
|
}>;
|
|
978
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1085
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1086
|
+
[x: string]: unknown;
|
|
1087
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
979
1088
|
[x: string]: string | undefined;
|
|
980
1089
|
}>;
|
|
981
1090
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1027,21 +1136,31 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1027
1136
|
load(): Promise<void>;
|
|
1028
1137
|
loadPre(): Promise<void>;
|
|
1029
1138
|
} & {
|
|
1030
|
-
getAdapterMapEntry(adapterConf:
|
|
1031
|
-
|
|
1139
|
+
getAdapterMapEntry(adapterConf: {
|
|
1140
|
+
[x: string]: unknown;
|
|
1141
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1142
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1143
|
+
[x: string]: unknown;
|
|
1144
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1032
1145
|
[x: string]: string | undefined;
|
|
1033
1146
|
}>;
|
|
1034
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1147
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1148
|
+
[x: string]: unknown;
|
|
1149
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1035
1150
|
[x: string]: string | undefined;
|
|
1036
1151
|
}>;
|
|
1037
1152
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1038
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1153
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1154
|
+
[x: string]: unknown;
|
|
1155
|
+
}, assemblyName: string | undefined, opts: {
|
|
1039
1156
|
signal?: AbortSignal | undefined;
|
|
1040
1157
|
sessionId: string;
|
|
1041
1158
|
}): Promise<{
|
|
1042
1159
|
[x: string]: string | undefined;
|
|
1043
1160
|
} | undefined>;
|
|
1044
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1161
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1162
|
+
[x: string]: unknown;
|
|
1163
|
+
}, assemblyName: string | undefined, opts: {
|
|
1045
1164
|
signal?: AbortSignal | undefined;
|
|
1046
1165
|
sessionId: string;
|
|
1047
1166
|
}): Promise<{
|
|
@@ -1099,11 +1218,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1099
1218
|
load(): Promise<void>;
|
|
1100
1219
|
loadPre(): Promise<void>;
|
|
1101
1220
|
} & {
|
|
1102
|
-
getAdapterMapEntry(adapterConf:
|
|
1103
|
-
|
|
1221
|
+
getAdapterMapEntry(adapterConf: {
|
|
1222
|
+
[x: string]: unknown;
|
|
1223
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1224
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1225
|
+
[x: string]: unknown;
|
|
1226
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1104
1227
|
[x: string]: string | undefined;
|
|
1105
1228
|
}>;
|
|
1106
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1229
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1230
|
+
[x: string]: unknown;
|
|
1231
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1107
1232
|
[x: string]: string | undefined;
|
|
1108
1233
|
}>;
|
|
1109
1234
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1155,11 +1280,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1155
1280
|
load(): Promise<void>;
|
|
1156
1281
|
loadPre(): Promise<void>;
|
|
1157
1282
|
} & {
|
|
1158
|
-
getAdapterMapEntry(adapterConf:
|
|
1159
|
-
|
|
1283
|
+
getAdapterMapEntry(adapterConf: {
|
|
1284
|
+
[x: string]: unknown;
|
|
1285
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1286
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1287
|
+
[x: string]: unknown;
|
|
1288
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1160
1289
|
[x: string]: string | undefined;
|
|
1161
1290
|
}>;
|
|
1162
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1291
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1292
|
+
[x: string]: unknown;
|
|
1293
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1163
1294
|
[x: string]: string | undefined;
|
|
1164
1295
|
}>;
|
|
1165
1296
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
@@ -1191,7 +1322,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1191
1322
|
error: unknown;
|
|
1192
1323
|
loaded: boolean;
|
|
1193
1324
|
loadingP: Promise<void> | undefined;
|
|
1194
|
-
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1325
|
+
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined; /**
|
|
1326
|
+
* #property
|
|
1327
|
+
*/
|
|
1195
1328
|
refNameAliases: {
|
|
1196
1329
|
[x: string]: string | undefined;
|
|
1197
1330
|
} | undefined;
|
|
@@ -1217,7 +1350,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1217
1350
|
} & {
|
|
1218
1351
|
readonly refNames: string[] | undefined;
|
|
1219
1352
|
} & {
|
|
1220
|
-
getCanonicalRefName(refName: string): string | undefined;
|
|
1353
|
+
getCanonicalRefName(refName: string): string | undefined; /**
|
|
1354
|
+
* #action
|
|
1355
|
+
*/
|
|
1221
1356
|
getRefNameColor(refName: string): string | undefined;
|
|
1222
1357
|
isValidRefName(refName: string): boolean;
|
|
1223
1358
|
} & {
|
|
@@ -1234,15 +1369,19 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1234
1369
|
load(): Promise<void>;
|
|
1235
1370
|
loadPre(): Promise<void>;
|
|
1236
1371
|
} & {
|
|
1237
|
-
getAdapterMapEntry(adapterConf:
|
|
1238
|
-
|
|
1372
|
+
getAdapterMapEntry(adapterConf: {
|
|
1373
|
+
[x: string]: unknown;
|
|
1374
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1375
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1376
|
+
[x: string]: unknown;
|
|
1377
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1239
1378
|
[x: string]: string | undefined;
|
|
1240
1379
|
}>;
|
|
1241
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1380
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1381
|
+
[x: string]: unknown;
|
|
1382
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1242
1383
|
[x: string]: string | undefined;
|
|
1243
|
-
}>;
|
|
1244
|
-
* #action
|
|
1245
|
-
*/
|
|
1384
|
+
}>;
|
|
1246
1385
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1247
1386
|
}, {
|
|
1248
1387
|
readonly assemblyNameMap: Record<string, ({
|
|
@@ -1294,11 +1433,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1294
1433
|
load(): Promise<void>;
|
|
1295
1434
|
loadPre(): Promise<void>;
|
|
1296
1435
|
} & {
|
|
1297
|
-
getAdapterMapEntry(adapterConf:
|
|
1298
|
-
|
|
1436
|
+
getAdapterMapEntry(adapterConf: {
|
|
1437
|
+
[x: string]: unknown;
|
|
1438
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1439
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1440
|
+
[x: string]: unknown;
|
|
1441
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1299
1442
|
[x: string]: string | undefined;
|
|
1300
1443
|
}>;
|
|
1301
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1444
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1445
|
+
[x: string]: unknown;
|
|
1446
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1302
1447
|
[x: string]: string | undefined;
|
|
1303
1448
|
}>;
|
|
1304
1449
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1350,11 +1495,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1350
1495
|
load(): Promise<void>;
|
|
1351
1496
|
loadPre(): Promise<void>;
|
|
1352
1497
|
} & {
|
|
1353
|
-
getAdapterMapEntry(adapterConf:
|
|
1354
|
-
|
|
1498
|
+
getAdapterMapEntry(adapterConf: {
|
|
1499
|
+
[x: string]: unknown;
|
|
1500
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1501
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1502
|
+
[x: string]: unknown;
|
|
1503
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1355
1504
|
[x: string]: string | undefined;
|
|
1356
1505
|
}>;
|
|
1357
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1506
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1507
|
+
[x: string]: unknown;
|
|
1508
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1358
1509
|
[x: string]: string | undefined;
|
|
1359
1510
|
}>;
|
|
1360
1511
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1408,11 +1559,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1408
1559
|
load(): Promise<void>;
|
|
1409
1560
|
loadPre(): Promise<void>;
|
|
1410
1561
|
} & {
|
|
1411
|
-
getAdapterMapEntry(adapterConf:
|
|
1412
|
-
|
|
1562
|
+
getAdapterMapEntry(adapterConf: {
|
|
1563
|
+
[x: string]: unknown;
|
|
1564
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1565
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1566
|
+
[x: string]: unknown;
|
|
1567
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1413
1568
|
[x: string]: string | undefined;
|
|
1414
1569
|
}>;
|
|
1415
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1570
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1571
|
+
[x: string]: unknown;
|
|
1572
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1416
1573
|
[x: string]: string | undefined;
|
|
1417
1574
|
}>;
|
|
1418
1575
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1464,11 +1621,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1464
1621
|
load(): Promise<void>;
|
|
1465
1622
|
loadPre(): Promise<void>;
|
|
1466
1623
|
} & {
|
|
1467
|
-
getAdapterMapEntry(adapterConf:
|
|
1468
|
-
|
|
1624
|
+
getAdapterMapEntry(adapterConf: {
|
|
1625
|
+
[x: string]: unknown;
|
|
1626
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1627
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1628
|
+
[x: string]: unknown;
|
|
1629
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1469
1630
|
[x: string]: string | undefined;
|
|
1470
1631
|
}>;
|
|
1471
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1632
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1633
|
+
[x: string]: unknown;
|
|
1634
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1472
1635
|
[x: string]: string | undefined;
|
|
1473
1636
|
}>;
|
|
1474
1637
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1529,11 +1692,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1529
1692
|
load(): Promise<void>;
|
|
1530
1693
|
loadPre(): Promise<void>;
|
|
1531
1694
|
} & {
|
|
1532
|
-
getAdapterMapEntry(adapterConf:
|
|
1533
|
-
|
|
1695
|
+
getAdapterMapEntry(adapterConf: {
|
|
1696
|
+
[x: string]: unknown;
|
|
1697
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1698
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1699
|
+
[x: string]: unknown;
|
|
1700
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1534
1701
|
[x: string]: string | undefined;
|
|
1535
1702
|
}>;
|
|
1536
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1703
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1704
|
+
[x: string]: unknown;
|
|
1705
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1537
1706
|
[x: string]: string | undefined;
|
|
1538
1707
|
}>;
|
|
1539
1708
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1585,21 +1754,31 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1585
1754
|
load(): Promise<void>;
|
|
1586
1755
|
loadPre(): Promise<void>;
|
|
1587
1756
|
} & {
|
|
1588
|
-
getAdapterMapEntry(adapterConf:
|
|
1589
|
-
|
|
1757
|
+
getAdapterMapEntry(adapterConf: {
|
|
1758
|
+
[x: string]: unknown;
|
|
1759
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1760
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1761
|
+
[x: string]: unknown;
|
|
1762
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1590
1763
|
[x: string]: string | undefined;
|
|
1591
1764
|
}>;
|
|
1592
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1765
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1766
|
+
[x: string]: unknown;
|
|
1767
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1593
1768
|
[x: string]: string | undefined;
|
|
1594
1769
|
}>;
|
|
1595
1770
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1596
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1771
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1772
|
+
[x: string]: unknown;
|
|
1773
|
+
}, assemblyName: string | undefined, opts: {
|
|
1597
1774
|
signal?: AbortSignal | undefined;
|
|
1598
1775
|
sessionId: string;
|
|
1599
1776
|
}): Promise<{
|
|
1600
1777
|
[x: string]: string | undefined;
|
|
1601
1778
|
} | undefined>;
|
|
1602
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1779
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1780
|
+
[x: string]: unknown;
|
|
1781
|
+
}, assemblyName: string | undefined, opts: {
|
|
1603
1782
|
signal?: AbortSignal | undefined;
|
|
1604
1783
|
sessionId: string;
|
|
1605
1784
|
}): Promise<{
|
|
@@ -1657,11 +1836,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1657
1836
|
load(): Promise<void>;
|
|
1658
1837
|
loadPre(): Promise<void>;
|
|
1659
1838
|
} & {
|
|
1660
|
-
getAdapterMapEntry(adapterConf:
|
|
1661
|
-
|
|
1839
|
+
getAdapterMapEntry(adapterConf: {
|
|
1840
|
+
[x: string]: unknown;
|
|
1841
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1842
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1843
|
+
[x: string]: unknown;
|
|
1844
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1662
1845
|
[x: string]: string | undefined;
|
|
1663
1846
|
}>;
|
|
1664
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1847
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1848
|
+
[x: string]: unknown;
|
|
1849
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1665
1850
|
[x: string]: string | undefined;
|
|
1666
1851
|
}>;
|
|
1667
1852
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1713,11 +1898,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1713
1898
|
load(): Promise<void>;
|
|
1714
1899
|
loadPre(): Promise<void>;
|
|
1715
1900
|
} & {
|
|
1716
|
-
getAdapterMapEntry(adapterConf:
|
|
1717
|
-
|
|
1901
|
+
getAdapterMapEntry(adapterConf: {
|
|
1902
|
+
[x: string]: unknown;
|
|
1903
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1904
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1905
|
+
[x: string]: unknown;
|
|
1906
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1718
1907
|
[x: string]: string | undefined;
|
|
1719
1908
|
}>;
|
|
1720
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1909
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1910
|
+
[x: string]: unknown;
|
|
1911
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1721
1912
|
[x: string]: string | undefined;
|
|
1722
1913
|
}>;
|
|
1723
1914
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|