@jbrowse/product-core 2.6.2 → 2.7.0

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Files changed (45) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +136 -115
  2. package/dist/RootModel/FormatAbout.d.ts +22 -0
  3. package/dist/RootModel/FormatAbout.js +29 -0
  4. package/dist/RootModel/FormatDetails.d.ts +32 -0
  5. package/dist/RootModel/FormatDetails.js +39 -0
  6. package/dist/RootModel/HierarchicalConfig.d.ts +45 -0
  7. package/dist/RootModel/HierarchicalConfig.js +52 -0
  8. package/dist/RootModel/index.d.ts +3 -0
  9. package/dist/RootModel/index.js +3 -0
  10. package/dist/Session/BaseSession.d.ts +13 -6
  11. package/dist/Session/BaseSession.js +3 -6
  12. package/dist/Session/Connections.d.ts +1 -2
  13. package/dist/Session/DialogQueue.d.ts +1 -1
  14. package/dist/Session/DialogQueue.js +1 -1
  15. package/dist/Session/MultipleViews.d.ts +396 -353
  16. package/dist/Session/ReferenceManagement.d.ts +1 -1
  17. package/dist/Session/ReferenceManagement.js +1 -1
  18. package/dist/Session/SessionTracks.d.ts +389 -351
  19. package/dist/Session/Themes.d.ts +2 -4
  20. package/dist/Session/Themes.js +1 -1
  21. package/dist/Session/Tracks.d.ts +387 -337
  22. package/dist/rpcWorker.js +0 -1
  23. package/esm/RootModel/BaseRootModel.d.ts +136 -115
  24. package/esm/RootModel/FormatAbout.d.ts +22 -0
  25. package/esm/RootModel/FormatAbout.js +25 -0
  26. package/esm/RootModel/FormatDetails.d.ts +32 -0
  27. package/esm/RootModel/FormatDetails.js +35 -0
  28. package/esm/RootModel/HierarchicalConfig.d.ts +45 -0
  29. package/esm/RootModel/HierarchicalConfig.js +48 -0
  30. package/esm/RootModel/index.d.ts +3 -0
  31. package/esm/RootModel/index.js +3 -0
  32. package/esm/Session/BaseSession.d.ts +13 -6
  33. package/esm/Session/BaseSession.js +3 -3
  34. package/esm/Session/Connections.d.ts +1 -2
  35. package/esm/Session/DialogQueue.d.ts +1 -1
  36. package/esm/Session/DialogQueue.js +1 -1
  37. package/esm/Session/MultipleViews.d.ts +396 -353
  38. package/esm/Session/ReferenceManagement.d.ts +1 -1
  39. package/esm/Session/ReferenceManagement.js +1 -1
  40. package/esm/Session/SessionTracks.d.ts +389 -351
  41. package/esm/Session/Themes.d.ts +2 -4
  42. package/esm/Session/Themes.js +1 -1
  43. package/esm/Session/Tracks.d.ts +387 -337
  44. package/esm/rpcWorker.js +0 -1
  45. package/package.json +7 -7
package/dist/Session/MultipleViews.d.ts CHANGED
@@ -22,7 +22,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
22
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  */
23
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  views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
24
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  }, {
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- selection: unknown;
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+ selection: unknown; /**
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+ * #action
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+ */
26
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  } & {
27
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  readonly root: {
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  jbrowse: any;
@@ -43,6 +45,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
43
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  [x: string]: string | undefined;
44
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  } | undefined;
45
47
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
48
+ } & {
49
+ getConf(arg: string): any;
46
50
  } & {
47
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  readonly initialized: boolean;
48
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  readonly name: string;
@@ -74,9 +78,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
74
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
75
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  setLoadingP(p?: Promise<void> | undefined): void;
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  load(): Promise<void>;
77
- /**
78
- * #action
79
- */
80
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  loadPre(): Promise<void>;
81
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  } & {
82
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -85,7 +86,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
85
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  }>;
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  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
88
- }>;
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+ }>; /**
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+ * #action
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+ */
89
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
90
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
91
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  }, {
@@ -100,6 +103,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
100
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
103
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -131,9 +136,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
131
136
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
132
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  setLoadingP(p?: Promise<void> | undefined): void;
133
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  load(): Promise<void>;
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- /**
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+ loadPre(): Promise<void>;
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+ } & {
141
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
142
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
146
+ [x: string]: string | undefined;
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+ }>; /**
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  * #action
136
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  */
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
151
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
152
+ readonly assemblyNameMap: Record<string, ({
153
+ configuration: any;
154
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ error: unknown;
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+ loaded: boolean;
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+ loadingP: Promise<void> | undefined;
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+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
159
+ refNameAliases: {
160
+ [x: string]: string | undefined;
161
+ } | undefined;
162
+ lowerCaseRefNameAliases: {
163
+ [x: string]: string | undefined;
164
+ } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
166
+ } & {
167
+ getConf(arg: string): any;
168
+ } & {
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+ readonly initialized: boolean;
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+ readonly name: string;
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+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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+ readonly aliases: string[];
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+ readonly displayName: string | undefined;
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+ hasName(name: string): boolean;
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+ readonly allAliases: string[];
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+ readonly allRefNames: string[] | undefined;
177
+ readonly lowerCaseRefNames: string[] | undefined;
178
+ readonly allRefNamesWithLowerCase: string[] | undefined;
179
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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+ readonly refNameColors: string[];
181
+ } & {
182
+ readonly refNames: string[] | undefined;
183
+ } & {
184
+ getCanonicalRefName(refName: string): string | undefined;
185
+ getRefNameColor(refName: string): string | undefined;
186
+ isValidRefName(refName: string): boolean;
187
+ } & {
188
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
189
+ setError(e: unknown): void;
190
+ setRegions(regions: Region[]): void;
191
+ setRefNameAliases(aliases: {
192
+ [x: string]: string | undefined;
193
+ }, lcAliases: {
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+ [x: string]: string | undefined;
195
+ }): void;
196
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
197
+ setLoadingP(p?: Promise<void> | undefined): void;
198
+ load(): Promise<void>;
137
199
  loadPre(): Promise<void>;
138
200
  } & {
139
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -143,120 +205,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
143
205
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
144
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  [x: string]: string | undefined;
145
207
  }>;
146
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
147
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
148
- readonly assemblyNameMap: {
149
- [key: string]: ({
150
- configuration: any;
151
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
152
- error: unknown;
153
- loaded: boolean;
154
- loadingP: Promise<void> | undefined;
155
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
156
- /** Session mixin MST type for a session that manages multiple views */
157
- refNameAliases: {
158
- [x: string]: string | undefined;
159
- } | undefined;
160
- lowerCaseRefNameAliases: {
161
- [x: string]: string | undefined;
162
- } | undefined;
163
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
164
- } & {
165
- readonly initialized: boolean;
166
- readonly name: string;
167
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
168
- readonly aliases: string[];
169
- readonly displayName: string | undefined;
170
- hasName(name: string): boolean;
171
- readonly allAliases: string[];
172
- readonly allRefNames: string[] | undefined;
173
- readonly lowerCaseRefNames: string[] | undefined;
174
- readonly allRefNamesWithLowerCase: string[] | undefined;
175
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
176
- readonly refNameColors: string[];
177
- } & {
178
- readonly refNames: string[] | undefined;
179
- } & {
180
- getCanonicalRefName(refName: string): string | undefined;
181
- getRefNameColor(refName: string): string | undefined;
182
- isValidRefName(refName: string): boolean;
183
- } & {
184
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
185
- setError(e: unknown): void;
186
- setRegions(regions: Region[]): void;
187
- setRefNameAliases(aliases: {
188
- [x: string]: string | undefined;
189
- }, lcAliases: {
190
- [x: string]: string | undefined;
191
- }): void;
192
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
193
- setLoadingP(p?: Promise<void> | undefined): void;
194
- load(): Promise<void>;
195
- loadPre(): Promise<void>;
196
- } & {
197
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
198
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
199
- [x: string]: string | undefined;
200
- }>;
201
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
202
- [x: string]: string | undefined;
203
- }>;
204
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
205
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
206
- }, {
207
- error: unknown;
208
- loaded: boolean;
209
- loadingP: Promise<void> | undefined;
210
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
211
- refNameAliases: {
212
- [x: string]: string | undefined;
213
- } | undefined;
214
- lowerCaseRefNameAliases: {
215
- [x: string]: string | undefined;
216
- } | undefined;
217
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
218
- } & {
219
- readonly initialized: boolean;
220
- readonly name: string;
221
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
222
- readonly aliases: string[];
223
- readonly displayName: string | undefined;
224
- hasName(name: string): boolean;
225
- readonly allAliases: string[];
226
- readonly allRefNames: string[] | undefined;
227
- readonly lowerCaseRefNames: string[] | undefined;
228
- readonly allRefNamesWithLowerCase: string[] | undefined;
229
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
230
- readonly refNameColors: string[];
231
- } & {
232
- readonly refNames: string[] | undefined;
233
- } & {
234
- getCanonicalRefName(refName: string): string | undefined;
235
- getRefNameColor(refName: string): string | undefined;
236
- isValidRefName(refName: string): boolean;
237
- } & {
238
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
239
- setError(e: unknown): void;
240
- setRegions(regions: Region[]): void;
241
- setRefNameAliases(aliases: {
242
- [x: string]: string | undefined;
243
- }, lcAliases: {
244
- [x: string]: string | undefined;
245
- }): void;
246
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
247
- setLoadingP(p?: Promise<void> | undefined): void;
248
- load(): Promise<void>;
249
- loadPre(): Promise<void>;
250
- } & {
251
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
252
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
253
- [x: string]: string | undefined;
254
- }>;
255
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
256
- [x: string]: string | undefined;
257
- }>;
258
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
259
- };
208
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
209
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
210
+ }, {
211
+ error: unknown;
212
+ loaded: boolean;
213
+ loadingP: Promise<void> | undefined;
214
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
215
+ refNameAliases: {
216
+ [x: string]: string | undefined;
217
+ } | undefined;
218
+ lowerCaseRefNameAliases: {
219
+ [x: string]: string | undefined;
220
+ } | undefined;
221
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
222
+ } & {
223
+ getConf(arg: string): any;
224
+ } & {
225
+ readonly initialized: boolean;
226
+ readonly name: string;
227
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
228
+ readonly aliases: string[];
229
+ readonly displayName: string | undefined;
230
+ hasName(name: string): boolean;
231
+ readonly allAliases: string[];
232
+ readonly allRefNames: string[] | undefined;
233
+ readonly lowerCaseRefNames: string[] | undefined;
234
+ readonly allRefNamesWithLowerCase: string[] | undefined;
235
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
236
+ readonly refNameColors: string[];
237
+ } & {
238
+ readonly refNames: string[] | undefined;
239
+ } & {
240
+ getCanonicalRefName(refName: string): string | undefined;
241
+ getRefNameColor(refName: string): string | undefined;
242
+ isValidRefName(refName: string): boolean;
243
+ } & {
244
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
245
+ setError(e: unknown): void;
246
+ setRegions(regions: Region[]): void;
247
+ setRefNameAliases(aliases: {
248
+ [x: string]: string | undefined;
249
+ }, lcAliases: {
250
+ [x: string]: string | undefined;
251
+ }): void;
252
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
253
+ setLoadingP(p?: Promise<void> | undefined): void;
254
+ load(): Promise<void>;
255
+ loadPre(): Promise<void>;
256
+ } & {
257
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
258
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
259
+ [x: string]: string | undefined;
260
+ }>;
261
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
262
+ [x: string]: string | undefined;
263
+ }>;
264
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
260
265
  } & {
261
266
  get(asmName: string): ({
262
267
  configuration: any;
@@ -272,6 +277,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
272
277
  [x: string]: string | undefined;
273
278
  } | undefined;
274
279
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
280
+ } & {
281
+ getConf(arg: string): any;
275
282
  } & {
276
283
  readonly initialized: boolean;
277
284
  readonly name: string;
@@ -326,6 +333,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
326
333
  [x: string]: string | undefined;
327
334
  } | undefined;
328
335
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
336
+ } & {
337
+ getConf(arg: string): any;
329
338
  } & {
330
339
  readonly initialized: boolean;
331
340
  readonly name: string;
@@ -389,6 +398,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
389
398
  [x: string]: string | undefined;
390
399
  } | undefined;
391
400
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
401
+ } & {
402
+ getConf(arg: string): any;
392
403
  } & {
393
404
  readonly initialized: boolean;
394
405
  readonly name: string;
@@ -443,6 +454,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
443
454
  [x: string]: string | undefined;
444
455
  } | undefined;
445
456
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
457
+ } & {
458
+ getConf(arg: string): any;
446
459
  } & {
447
460
  readonly initialized: boolean;
448
461
  readonly name: string;
@@ -513,6 +526,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
513
526
  [x: string]: string | undefined;
514
527
  } | undefined;
515
528
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
529
+ } & {
530
+ getConf(arg: string): any;
516
531
  } & {
517
532
  readonly initialized: boolean;
518
533
  readonly name: string;
@@ -567,6 +582,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
567
582
  [x: string]: string | undefined;
568
583
  } | undefined;
569
584
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
585
+ } & {
586
+ getConf(arg: string): any;
570
587
  } & {
571
588
  readonly initialized: boolean;
572
589
  readonly name: string;
@@ -625,6 +642,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
625
642
  [x: string]: string | undefined;
626
643
  } | undefined;
627
644
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
645
+ } & {
646
+ getConf(arg: string): any;
628
647
  } & {
629
648
  readonly initialized: boolean;
630
649
  readonly name: string;
@@ -656,9 +675,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
656
675
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
657
676
  setLoadingP(p?: Promise<void> | undefined): void;
658
677
  load(): Promise<void>;
659
- /**
678
+ loadPre(): Promise<void>;
679
+ } & {
680
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
681
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
682
+ [x: string]: string | undefined;
683
+ }>;
684
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
685
+ [x: string]: string | undefined;
686
+ }>; /**
660
687
  * #action
661
688
  */
689
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
690
+ }, {
691
+ readonly assemblyNameMap: Record<string, ({
692
+ configuration: any;
693
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
694
+ error: unknown;
695
+ loaded: boolean;
696
+ loadingP: Promise<void> | undefined;
697
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
698
+ refNameAliases: {
699
+ [x: string]: string | undefined;
700
+ } | undefined;
701
+ lowerCaseRefNameAliases: {
702
+ [x: string]: string | undefined;
703
+ } | undefined;
704
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
705
+ } & {
706
+ getConf(arg: string): any;
707
+ } & {
708
+ readonly initialized: boolean;
709
+ readonly name: string;
710
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
711
+ readonly aliases: string[];
712
+ readonly displayName: string | undefined;
713
+ hasName(name: string): boolean;
714
+ readonly allAliases: string[];
715
+ readonly allRefNames: string[] | undefined;
716
+ readonly lowerCaseRefNames: string[] | undefined;
717
+ readonly allRefNamesWithLowerCase: string[] | undefined;
718
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
719
+ readonly refNameColors: string[];
720
+ } & {
721
+ readonly refNames: string[] | undefined;
722
+ } & {
723
+ getCanonicalRefName(refName: string): string | undefined;
724
+ getRefNameColor(refName: string): string | undefined;
725
+ isValidRefName(refName: string): boolean;
726
+ } & {
727
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
728
+ setError(e: unknown): void;
729
+ setRegions(regions: Region[]): void;
730
+ setRefNameAliases(aliases: {
731
+ [x: string]: string | undefined;
732
+ }, lcAliases: {
733
+ [x: string]: string | undefined;
734
+ }): void;
735
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
736
+ setLoadingP(p?: Promise<void> | undefined): void;
737
+ load(): Promise<void>;
662
738
  loadPre(): Promise<void>;
663
739
  } & {
664
740
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -668,120 +744,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
668
744
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
669
745
  [x: string]: string | undefined;
670
746
  }>;
671
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
672
- }, {
673
- readonly assemblyNameMap: {
674
- [key: string]: ({
675
- configuration: any;
676
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
677
- error: unknown;
678
- loaded: boolean;
679
- loadingP: Promise<void> | undefined;
680
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
681
- /** Session mixin MST type for a session that manages multiple views */
682
- refNameAliases: {
683
- [x: string]: string | undefined;
684
- } | undefined;
685
- lowerCaseRefNameAliases: {
686
- [x: string]: string | undefined;
687
- } | undefined;
688
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
689
- } & {
690
- readonly initialized: boolean;
691
- readonly name: string;
692
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
693
- readonly aliases: string[];
694
- readonly displayName: string | undefined;
695
- hasName(name: string): boolean;
696
- readonly allAliases: string[];
697
- readonly allRefNames: string[] | undefined;
698
- readonly lowerCaseRefNames: string[] | undefined;
699
- readonly allRefNamesWithLowerCase: string[] | undefined;
700
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
701
- readonly refNameColors: string[];
702
- } & {
703
- readonly refNames: string[] | undefined;
704
- } & {
705
- getCanonicalRefName(refName: string): string | undefined;
706
- getRefNameColor(refName: string): string | undefined;
707
- isValidRefName(refName: string): boolean;
708
- } & {
709
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
710
- setError(e: unknown): void;
711
- setRegions(regions: Region[]): void;
712
- setRefNameAliases(aliases: {
713
- [x: string]: string | undefined;
714
- }, lcAliases: {
715
- [x: string]: string | undefined;
716
- }): void;
717
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
718
- setLoadingP(p?: Promise<void> | undefined): void;
719
- load(): Promise<void>;
720
- loadPre(): Promise<void>;
721
- } & {
722
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
723
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
724
- [x: string]: string | undefined;
725
- }>;
726
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
727
- [x: string]: string | undefined;
728
- }>;
729
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
730
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
731
- }, {
732
- error: unknown;
733
- loaded: boolean;
734
- loadingP: Promise<void> | undefined;
735
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
736
- refNameAliases: {
737
- [x: string]: string | undefined;
738
- } | undefined;
739
- lowerCaseRefNameAliases: {
740
- [x: string]: string | undefined;
741
- } | undefined;
742
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
743
- } & {
744
- readonly initialized: boolean;
745
- readonly name: string;
746
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
747
- readonly aliases: string[];
748
- readonly displayName: string | undefined;
749
- hasName(name: string): boolean;
750
- readonly allAliases: string[];
751
- readonly allRefNames: string[] | undefined;
752
- readonly lowerCaseRefNames: string[] | undefined;
753
- readonly allRefNamesWithLowerCase: string[] | undefined;
754
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
755
- readonly refNameColors: string[];
756
- } & {
757
- readonly refNames: string[] | undefined;
758
- } & {
759
- getCanonicalRefName(refName: string): string | undefined;
760
- getRefNameColor(refName: string): string | undefined;
761
- isValidRefName(refName: string): boolean;
762
- } & {
763
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
764
- setError(e: unknown): void;
765
- setRegions(regions: Region[]): void;
766
- setRefNameAliases(aliases: {
767
- [x: string]: string | undefined;
768
- }, lcAliases: {
769
- [x: string]: string | undefined;
770
- }): void;
771
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
772
- setLoadingP(p?: Promise<void> | undefined): void;
773
- load(): Promise<void>;
774
- loadPre(): Promise<void>;
775
- } & {
776
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
777
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
778
- [x: string]: string | undefined;
779
- }>;
780
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
781
- [x: string]: string | undefined;
782
- }>;
783
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
784
- };
747
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
748
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
749
+ }, {
750
+ error: unknown;
751
+ loaded: boolean;
752
+ loadingP: Promise<void> | undefined;
753
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
754
+ refNameAliases: {
755
+ [x: string]: string | undefined;
756
+ } | undefined;
757
+ lowerCaseRefNameAliases: {
758
+ [x: string]: string | undefined;
759
+ } | undefined;
760
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
761
+ } & {
762
+ getConf(arg: string): any;
763
+ } & {
764
+ readonly initialized: boolean;
765
+ readonly name: string;
766
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
767
+ readonly aliases: string[];
768
+ readonly displayName: string | undefined;
769
+ hasName(name: string): boolean;
770
+ readonly allAliases: string[];
771
+ readonly allRefNames: string[] | undefined;
772
+ readonly lowerCaseRefNames: string[] | undefined;
773
+ readonly allRefNamesWithLowerCase: string[] | undefined;
774
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
775
+ readonly refNameColors: string[];
776
+ } & {
777
+ readonly refNames: string[] | undefined;
778
+ } & {
779
+ getCanonicalRefName(refName: string): string | undefined;
780
+ getRefNameColor(refName: string): string | undefined;
781
+ isValidRefName(refName: string): boolean;
782
+ } & {
783
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
784
+ setError(e: unknown): void;
785
+ setRegions(regions: Region[]): void;
786
+ setRefNameAliases(aliases: {
787
+ [x: string]: string | undefined;
788
+ }, lcAliases: {
789
+ [x: string]: string | undefined;
790
+ }): void;
791
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
792
+ setLoadingP(p?: Promise<void> | undefined): void;
793
+ load(): Promise<void>;
794
+ loadPre(): Promise<void>;
795
+ } & {
796
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
797
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
798
+ [x: string]: string | undefined;
799
+ }>;
800
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
801
+ [x: string]: string | undefined;
802
+ }>;
803
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
785
804
  } & {
786
805
  get(asmName: string): ({
787
806
  configuration: any;
@@ -797,6 +816,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
797
816
  [x: string]: string | undefined;
798
817
  } | undefined;
799
818
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
819
+ } & {
820
+ getConf(arg: string): any;
800
821
  } & {
801
822
  readonly initialized: boolean;
802
823
  readonly name: string;
@@ -851,6 +872,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
851
872
  [x: string]: string | undefined;
852
873
  } | undefined;
853
874
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
875
+ } & {
876
+ getConf(arg: string): any;
854
877
  } & {
855
878
  readonly initialized: boolean;
856
879
  readonly name: string;
@@ -914,6 +937,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
914
937
  [x: string]: string | undefined;
915
938
  } | undefined;
916
939
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
940
+ } & {
941
+ getConf(arg: string): any;
917
942
  } & {
918
943
  readonly initialized: boolean;
919
944
  readonly name: string;
@@ -968,6 +993,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
968
993
  [x: string]: string | undefined;
969
994
  } | undefined;
970
995
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
996
+ } & {
997
+ getConf(arg: string): any;
971
998
  } & {
972
999
  readonly initialized: boolean;
973
1000
  readonly name: string;
@@ -1038,6 +1065,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1038
1065
  [x: string]: string | undefined;
1039
1066
  } | undefined;
1040
1067
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1068
+ } & {
1069
+ getConf(arg: string): any;
1041
1070
  } & {
1042
1071
  readonly initialized: boolean;
1043
1072
  readonly name: string;
@@ -1092,6 +1121,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1092
1121
  [x: string]: string | undefined;
1093
1122
  } | undefined;
1094
1123
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1124
+ } & {
1125
+ getConf(arg: string): any;
1095
1126
  } & {
1096
1127
  readonly initialized: boolean;
1097
1128
  readonly name: string;
@@ -1169,6 +1200,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1169
1200
  [x: string]: string | undefined;
1170
1201
  } | undefined;
1171
1202
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1203
+ } & {
1204
+ getConf(arg: string): any;
1172
1205
  } & {
1173
1206
  readonly initialized: boolean;
1174
1207
  readonly name: string;
@@ -1200,9 +1233,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1200
1233
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1201
1234
  setLoadingP(p?: Promise<void> | undefined): void;
1202
1235
  load(): Promise<void>;
1203
- /**
1236
+ loadPre(): Promise<void>;
1237
+ } & {
1238
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1239
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1240
+ [x: string]: string | undefined;
1241
+ }>;
1242
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1243
+ [x: string]: string | undefined;
1244
+ }>; /**
1204
1245
  * #action
1205
1246
  */
1247
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1248
+ }, {
1249
+ readonly assemblyNameMap: Record<string, ({
1250
+ configuration: any;
1251
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1252
+ error: unknown;
1253
+ loaded: boolean;
1254
+ loadingP: Promise<void> | undefined;
1255
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1256
+ refNameAliases: {
1257
+ [x: string]: string | undefined;
1258
+ } | undefined;
1259
+ lowerCaseRefNameAliases: {
1260
+ [x: string]: string | undefined;
1261
+ } | undefined;
1262
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1263
+ } & {
1264
+ getConf(arg: string): any;
1265
+ } & {
1266
+ readonly initialized: boolean;
1267
+ readonly name: string;
1268
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1269
+ readonly aliases: string[];
1270
+ readonly displayName: string | undefined;
1271
+ hasName(name: string): boolean;
1272
+ readonly allAliases: string[];
1273
+ readonly allRefNames: string[] | undefined;
1274
+ readonly lowerCaseRefNames: string[] | undefined;
1275
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1276
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1277
+ readonly refNameColors: string[];
1278
+ } & {
1279
+ readonly refNames: string[] | undefined;
1280
+ } & {
1281
+ getCanonicalRefName(refName: string): string | undefined;
1282
+ getRefNameColor(refName: string): string | undefined;
1283
+ isValidRefName(refName: string): boolean;
1284
+ } & {
1285
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1286
+ setError(e: unknown): void;
1287
+ setRegions(regions: Region[]): void;
1288
+ setRefNameAliases(aliases: {
1289
+ [x: string]: string | undefined;
1290
+ }, lcAliases: {
1291
+ [x: string]: string | undefined;
1292
+ }): void;
1293
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1294
+ setLoadingP(p?: Promise<void> | undefined): void;
1295
+ load(): Promise<void>;
1206
1296
  loadPre(): Promise<void>;
1207
1297
  } & {
1208
1298
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -1212,120 +1302,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1212
1302
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1213
1303
  [x: string]: string | undefined;
1214
1304
  }>;
1215
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1216
- }, {
1217
- readonly assemblyNameMap: {
1218
- [key: string]: ({
1219
- configuration: any;
1220
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1221
- error: unknown;
1222
- loaded: boolean;
1223
- loadingP: Promise<void> | undefined;
1224
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1225
- /** Session mixin MST type for a session that manages multiple views */
1226
- refNameAliases: {
1227
- [x: string]: string | undefined;
1228
- } | undefined;
1229
- lowerCaseRefNameAliases: {
1230
- [x: string]: string | undefined;
1231
- } | undefined;
1232
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1233
- } & {
1234
- readonly initialized: boolean;
1235
- readonly name: string;
1236
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1237
- readonly aliases: string[];
1238
- readonly displayName: string | undefined;
1239
- hasName(name: string): boolean;
1240
- readonly allAliases: string[];
1241
- readonly allRefNames: string[] | undefined;
1242
- readonly lowerCaseRefNames: string[] | undefined;
1243
- readonly allRefNamesWithLowerCase: string[] | undefined;
1244
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1245
- readonly refNameColors: string[];
1246
- } & {
1247
- readonly refNames: string[] | undefined;
1248
- } & {
1249
- getCanonicalRefName(refName: string): string | undefined;
1250
- getRefNameColor(refName: string): string | undefined;
1251
- isValidRefName(refName: string): boolean;
1252
- } & {
1253
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1254
- setError(e: unknown): void;
1255
- setRegions(regions: Region[]): void;
1256
- setRefNameAliases(aliases: {
1257
- [x: string]: string | undefined;
1258
- }, lcAliases: {
1259
- [x: string]: string | undefined;
1260
- }): void;
1261
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1262
- setLoadingP(p?: Promise<void> | undefined): void;
1263
- load(): Promise<void>;
1264
- loadPre(): Promise<void>;
1265
- } & {
1266
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1267
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1268
- [x: string]: string | undefined;
1269
- }>;
1270
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1271
- [x: string]: string | undefined;
1272
- }>;
1273
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1274
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1275
- }, {
1276
- error: unknown;
1277
- loaded: boolean;
1278
- loadingP: Promise<void> | undefined;
1279
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1280
- refNameAliases: {
1281
- [x: string]: string | undefined;
1282
- } | undefined;
1283
- lowerCaseRefNameAliases: {
1284
- [x: string]: string | undefined;
1285
- } | undefined;
1286
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1287
- } & {
1288
- readonly initialized: boolean;
1289
- readonly name: string;
1290
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1291
- readonly aliases: string[];
1292
- readonly displayName: string | undefined;
1293
- hasName(name: string): boolean;
1294
- readonly allAliases: string[];
1295
- readonly allRefNames: string[] | undefined;
1296
- readonly lowerCaseRefNames: string[] | undefined;
1297
- readonly allRefNamesWithLowerCase: string[] | undefined;
1298
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1299
- readonly refNameColors: string[];
1300
- } & {
1301
- readonly refNames: string[] | undefined;
1302
- } & {
1303
- getCanonicalRefName(refName: string): string | undefined;
1304
- getRefNameColor(refName: string): string | undefined;
1305
- isValidRefName(refName: string): boolean;
1306
- } & {
1307
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1308
- setError(e: unknown): void;
1309
- setRegions(regions: Region[]): void;
1310
- setRefNameAliases(aliases: {
1311
- [x: string]: string | undefined;
1312
- }, lcAliases: {
1313
- [x: string]: string | undefined;
1314
- }): void;
1315
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1316
- setLoadingP(p?: Promise<void> | undefined): void;
1317
- load(): Promise<void>;
1318
- loadPre(): Promise<void>;
1319
- } & {
1320
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1321
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1322
- [x: string]: string | undefined;
1323
- }>;
1324
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1325
- [x: string]: string | undefined;
1326
- }>;
1327
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1328
- };
1305
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1306
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1307
+ }, {
1308
+ error: unknown;
1309
+ loaded: boolean;
1310
+ loadingP: Promise<void> | undefined;
1311
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1312
+ refNameAliases: {
1313
+ [x: string]: string | undefined;
1314
+ } | undefined;
1315
+ lowerCaseRefNameAliases: {
1316
+ [x: string]: string | undefined;
1317
+ } | undefined;
1318
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1319
+ } & {
1320
+ getConf(arg: string): any;
1321
+ } & {
1322
+ readonly initialized: boolean;
1323
+ readonly name: string;
1324
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1325
+ readonly aliases: string[];
1326
+ readonly displayName: string | undefined;
1327
+ hasName(name: string): boolean;
1328
+ readonly allAliases: string[];
1329
+ readonly allRefNames: string[] | undefined;
1330
+ readonly lowerCaseRefNames: string[] | undefined;
1331
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1332
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1333
+ readonly refNameColors: string[];
1334
+ } & {
1335
+ readonly refNames: string[] | undefined;
1336
+ } & {
1337
+ getCanonicalRefName(refName: string): string | undefined;
1338
+ getRefNameColor(refName: string): string | undefined;
1339
+ isValidRefName(refName: string): boolean;
1340
+ } & {
1341
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1342
+ setError(e: unknown): void;
1343
+ setRegions(regions: Region[]): void;
1344
+ setRefNameAliases(aliases: {
1345
+ [x: string]: string | undefined;
1346
+ }, lcAliases: {
1347
+ [x: string]: string | undefined;
1348
+ }): void;
1349
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1350
+ setLoadingP(p?: Promise<void> | undefined): void;
1351
+ load(): Promise<void>;
1352
+ loadPre(): Promise<void>;
1353
+ } & {
1354
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1355
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1356
+ [x: string]: string | undefined;
1357
+ }>;
1358
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1359
+ [x: string]: string | undefined;
1360
+ }>;
1361
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1329
1362
  } & {
1330
1363
  get(asmName: string): ({
1331
1364
  configuration: any;
@@ -1341,6 +1374,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1341
1374
  [x: string]: string | undefined;
1342
1375
  } | undefined;
1343
1376
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1377
+ } & {
1378
+ getConf(arg: string): any;
1344
1379
  } & {
1345
1380
  readonly initialized: boolean;
1346
1381
  readonly name: string;
@@ -1395,6 +1430,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1395
1430
  [x: string]: string | undefined;
1396
1431
  } | undefined;
1397
1432
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1433
+ } & {
1434
+ getConf(arg: string): any;
1398
1435
  } & {
1399
1436
  readonly initialized: boolean;
1400
1437
  readonly name: string;
@@ -1458,6 +1495,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1458
1495
  [x: string]: string | undefined;
1459
1496
  } | undefined;
1460
1497
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1498
+ } & {
1499
+ getConf(arg: string): any;
1461
1500
  } & {
1462
1501
  readonly initialized: boolean;
1463
1502
  readonly name: string;
@@ -1512,6 +1551,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1512
1551
  [x: string]: string | undefined;
1513
1552
  } | undefined;
1514
1553
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1554
+ } & {
1555
+ getConf(arg: string): any;
1515
1556
  } & {
1516
1557
  readonly initialized: boolean;
1517
1558
  readonly name: string;
@@ -1582,6 +1623,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1582
1623
  [x: string]: string | undefined;
1583
1624
  } | undefined;
1584
1625
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1626
+ } & {
1627
+ getConf(arg: string): any;
1585
1628
  } & {
1586
1629
  readonly initialized: boolean;
1587
1630
  readonly name: string;
@@ -1636,6 +1679,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1636
1679
  [x: string]: string | undefined;
1637
1680
  } | undefined;
1638
1681
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1682
+ } & {
1683
+ getConf(arg: string): any;
1639
1684
  } & {
1640
1685
  readonly initialized: boolean;
1641
1686
  readonly name: string;
@@ -1736,9 +1781,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1736
1781
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>)[];
1737
1782
  } & {
1738
1783
  setSelection(thing: unknown): void;
1739
- clearSelection(): void; /**
1740
- * #action
1741
- */
1784
+ clearSelection(): void;
1742
1785
  } & {
1743
1786
  readonly visibleWidget: any;
1744
1787
  } & {