@jbrowse/product-core 2.6.2 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +136 -115
  2. package/dist/RootModel/FormatAbout.d.ts +22 -0
  3. package/dist/RootModel/FormatAbout.js +29 -0
  4. package/dist/RootModel/FormatDetails.d.ts +32 -0
  5. package/dist/RootModel/FormatDetails.js +39 -0
  6. package/dist/RootModel/HierarchicalConfig.d.ts +45 -0
  7. package/dist/RootModel/HierarchicalConfig.js +52 -0
  8. package/dist/RootModel/index.d.ts +3 -0
  9. package/dist/RootModel/index.js +3 -0
  10. package/dist/Session/BaseSession.d.ts +13 -6
  11. package/dist/Session/BaseSession.js +3 -6
  12. package/dist/Session/Connections.d.ts +1 -2
  13. package/dist/Session/DialogQueue.d.ts +1 -1
  14. package/dist/Session/DialogQueue.js +1 -1
  15. package/dist/Session/MultipleViews.d.ts +396 -353
  16. package/dist/Session/ReferenceManagement.d.ts +1 -1
  17. package/dist/Session/ReferenceManagement.js +1 -1
  18. package/dist/Session/SessionTracks.d.ts +389 -351
  19. package/dist/Session/Themes.d.ts +2 -4
  20. package/dist/Session/Themes.js +1 -1
  21. package/dist/Session/Tracks.d.ts +387 -337
  22. package/dist/rpcWorker.js +0 -1
  23. package/esm/RootModel/BaseRootModel.d.ts +136 -115
  24. package/esm/RootModel/FormatAbout.d.ts +22 -0
  25. package/esm/RootModel/FormatAbout.js +25 -0
  26. package/esm/RootModel/FormatDetails.d.ts +32 -0
  27. package/esm/RootModel/FormatDetails.js +35 -0
  28. package/esm/RootModel/HierarchicalConfig.d.ts +45 -0
  29. package/esm/RootModel/HierarchicalConfig.js +48 -0
  30. package/esm/RootModel/index.d.ts +3 -0
  31. package/esm/RootModel/index.js +3 -0
  32. package/esm/Session/BaseSession.d.ts +13 -6
  33. package/esm/Session/BaseSession.js +3 -3
  34. package/esm/Session/Connections.d.ts +1 -2
  35. package/esm/Session/DialogQueue.d.ts +1 -1
  36. package/esm/Session/DialogQueue.js +1 -1
  37. package/esm/Session/MultipleViews.d.ts +396 -353
  38. package/esm/Session/ReferenceManagement.d.ts +1 -1
  39. package/esm/Session/ReferenceManagement.js +1 -1
  40. package/esm/Session/SessionTracks.d.ts +389 -351
  41. package/esm/Session/Themes.d.ts +2 -4
  42. package/esm/Session/Themes.js +1 -1
  43. package/esm/Session/Tracks.d.ts +387 -337
  44. package/esm/rpcWorker.js +0 -1
  45. package/package.json +7 -7
package/esm/Session/MultipleViews.d.ts CHANGED
@@ -22,7 +22,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
22
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  */
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  views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
24
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  }, {
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- selection: unknown;
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+ selection: unknown; /**
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+ * #action
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+ */
26
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  } & {
27
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  readonly root: {
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  jbrowse: any;
@@ -43,6 +45,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  [x: string]: string | undefined;
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  } | undefined;
45
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
48
+ } & {
49
+ getConf(arg: string): any;
46
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  } & {
47
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  readonly initialized: boolean;
48
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  readonly name: string;
@@ -74,9 +78,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
75
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  setLoadingP(p?: Promise<void> | undefined): void;
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  load(): Promise<void>;
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- /**
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- * #action
79
- */
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  loadPre(): Promise<void>;
81
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  } & {
82
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -85,7 +86,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }>;
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  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
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- }>;
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+ }>; /**
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+ * #action
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+ */
89
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
90
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
91
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  }, {
@@ -100,6 +103,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -131,9 +136,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
131
136
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
132
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  setLoadingP(p?: Promise<void> | undefined): void;
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  load(): Promise<void>;
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- /**
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+ loadPre(): Promise<void>;
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+ } & {
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+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>; /**
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  * #action
136
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  */
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
152
+ readonly assemblyNameMap: Record<string, ({
153
+ configuration: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ error: unknown;
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+ loaded: boolean;
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+ loadingP: Promise<void> | undefined;
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+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
159
+ refNameAliases: {
160
+ [x: string]: string | undefined;
161
+ } | undefined;
162
+ lowerCaseRefNameAliases: {
163
+ [x: string]: string | undefined;
164
+ } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
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+ } & {
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+ readonly initialized: boolean;
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+ readonly name: string;
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+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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+ readonly aliases: string[];
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+ readonly displayName: string | undefined;
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+ hasName(name: string): boolean;
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+ readonly allAliases: string[];
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+ readonly allRefNames: string[] | undefined;
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+ readonly lowerCaseRefNames: string[] | undefined;
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+ readonly allRefNamesWithLowerCase: string[] | undefined;
179
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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+ readonly refNameColors: string[];
181
+ } & {
182
+ readonly refNames: string[] | undefined;
183
+ } & {
184
+ getCanonicalRefName(refName: string): string | undefined;
185
+ getRefNameColor(refName: string): string | undefined;
186
+ isValidRefName(refName: string): boolean;
187
+ } & {
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+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
189
+ setError(e: unknown): void;
190
+ setRegions(regions: Region[]): void;
191
+ setRefNameAliases(aliases: {
192
+ [x: string]: string | undefined;
193
+ }, lcAliases: {
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+ [x: string]: string | undefined;
195
+ }): void;
196
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
197
+ setLoadingP(p?: Promise<void> | undefined): void;
198
+ load(): Promise<void>;
137
199
  loadPre(): Promise<void>;
138
200
  } & {
139
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -143,120 +205,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
143
205
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
144
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  [x: string]: string | undefined;
145
207
  }>;
146
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
147
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
148
- readonly assemblyNameMap: {
149
- [key: string]: ({
150
- configuration: any;
151
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
152
- error: unknown;
153
- loaded: boolean;
154
- loadingP: Promise<void> | undefined;
155
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
156
- /** Session mixin MST type for a session that manages multiple views */
157
- refNameAliases: {
158
- [x: string]: string | undefined;
159
- } | undefined;
160
- lowerCaseRefNameAliases: {
161
- [x: string]: string | undefined;
162
- } | undefined;
163
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
164
- } & {
165
- readonly initialized: boolean;
166
- readonly name: string;
167
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
168
- readonly aliases: string[];
169
- readonly displayName: string | undefined;
170
- hasName(name: string): boolean;
171
- readonly allAliases: string[];
172
- readonly allRefNames: string[] | undefined;
173
- readonly lowerCaseRefNames: string[] | undefined;
174
- readonly allRefNamesWithLowerCase: string[] | undefined;
175
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
176
- readonly refNameColors: string[];
177
- } & {
178
- readonly refNames: string[] | undefined;
179
- } & {
180
- getCanonicalRefName(refName: string): string | undefined;
181
- getRefNameColor(refName: string): string | undefined;
182
- isValidRefName(refName: string): boolean;
183
- } & {
184
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
185
- setError(e: unknown): void;
186
- setRegions(regions: Region[]): void;
187
- setRefNameAliases(aliases: {
188
- [x: string]: string | undefined;
189
- }, lcAliases: {
190
- [x: string]: string | undefined;
191
- }): void;
192
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
193
- setLoadingP(p?: Promise<void> | undefined): void;
194
- load(): Promise<void>;
195
- loadPre(): Promise<void>;
196
- } & {
197
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
198
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
199
- [x: string]: string | undefined;
200
- }>;
201
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
202
- [x: string]: string | undefined;
203
- }>;
204
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
205
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
206
- }, {
207
- error: unknown;
208
- loaded: boolean;
209
- loadingP: Promise<void> | undefined;
210
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
211
- refNameAliases: {
212
- [x: string]: string | undefined;
213
- } | undefined;
214
- lowerCaseRefNameAliases: {
215
- [x: string]: string | undefined;
216
- } | undefined;
217
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
218
- } & {
219
- readonly initialized: boolean;
220
- readonly name: string;
221
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
222
- readonly aliases: string[];
223
- readonly displayName: string | undefined;
224
- hasName(name: string): boolean;
225
- readonly allAliases: string[];
226
- readonly allRefNames: string[] | undefined;
227
- readonly lowerCaseRefNames: string[] | undefined;
228
- readonly allRefNamesWithLowerCase: string[] | undefined;
229
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
230
- readonly refNameColors: string[];
231
- } & {
232
- readonly refNames: string[] | undefined;
233
- } & {
234
- getCanonicalRefName(refName: string): string | undefined;
235
- getRefNameColor(refName: string): string | undefined;
236
- isValidRefName(refName: string): boolean;
237
- } & {
238
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
239
- setError(e: unknown): void;
240
- setRegions(regions: Region[]): void;
241
- setRefNameAliases(aliases: {
242
- [x: string]: string | undefined;
243
- }, lcAliases: {
244
- [x: string]: string | undefined;
245
- }): void;
246
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
247
- setLoadingP(p?: Promise<void> | undefined): void;
248
- load(): Promise<void>;
249
- loadPre(): Promise<void>;
250
- } & {
251
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
252
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
253
- [x: string]: string | undefined;
254
- }>;
255
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
256
- [x: string]: string | undefined;
257
- }>;
258
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
259
- };
208
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
209
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
210
+ }, {
211
+ error: unknown;
212
+ loaded: boolean;
213
+ loadingP: Promise<void> | undefined;
214
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
215
+ refNameAliases: {
216
+ [x: string]: string | undefined;
217
+ } | undefined;
218
+ lowerCaseRefNameAliases: {
219
+ [x: string]: string | undefined;
220
+ } | undefined;
221
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
222
+ } & {
223
+ getConf(arg: string): any;
224
+ } & {
225
+ readonly initialized: boolean;
226
+ readonly name: string;
227
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
228
+ readonly aliases: string[];
229
+ readonly displayName: string | undefined;
230
+ hasName(name: string): boolean;
231
+ readonly allAliases: string[];
232
+ readonly allRefNames: string[] | undefined;
233
+ readonly lowerCaseRefNames: string[] | undefined;
234
+ readonly allRefNamesWithLowerCase: string[] | undefined;
235
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
236
+ readonly refNameColors: string[];
237
+ } & {
238
+ readonly refNames: string[] | undefined;
239
+ } & {
240
+ getCanonicalRefName(refName: string): string | undefined;
241
+ getRefNameColor(refName: string): string | undefined;
242
+ isValidRefName(refName: string): boolean;
243
+ } & {
244
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
245
+ setError(e: unknown): void;
246
+ setRegions(regions: Region[]): void;
247
+ setRefNameAliases(aliases: {
248
+ [x: string]: string | undefined;
249
+ }, lcAliases: {
250
+ [x: string]: string | undefined;
251
+ }): void;
252
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
253
+ setLoadingP(p?: Promise<void> | undefined): void;
254
+ load(): Promise<void>;
255
+ loadPre(): Promise<void>;
256
+ } & {
257
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
258
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
259
+ [x: string]: string | undefined;
260
+ }>;
261
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
262
+ [x: string]: string | undefined;
263
+ }>;
264
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
260
265
  } & {
261
266
  get(asmName: string): ({
262
267
  configuration: any;
@@ -272,6 +277,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
272
277
  [x: string]: string | undefined;
273
278
  } | undefined;
274
279
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
280
+ } & {
281
+ getConf(arg: string): any;
275
282
  } & {
276
283
  readonly initialized: boolean;
277
284
  readonly name: string;
@@ -326,6 +333,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
326
333
  [x: string]: string | undefined;
327
334
  } | undefined;
328
335
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
336
+ } & {
337
+ getConf(arg: string): any;
329
338
  } & {
330
339
  readonly initialized: boolean;
331
340
  readonly name: string;
@@ -389,6 +398,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
389
398
  [x: string]: string | undefined;
390
399
  } | undefined;
391
400
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
401
+ } & {
402
+ getConf(arg: string): any;
392
403
  } & {
393
404
  readonly initialized: boolean;
394
405
  readonly name: string;
@@ -443,6 +454,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
443
454
  [x: string]: string | undefined;
444
455
  } | undefined;
445
456
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
457
+ } & {
458
+ getConf(arg: string): any;
446
459
  } & {
447
460
  readonly initialized: boolean;
448
461
  readonly name: string;
@@ -513,6 +526,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
513
526
  [x: string]: string | undefined;
514
527
  } | undefined;
515
528
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
529
+ } & {
530
+ getConf(arg: string): any;
516
531
  } & {
517
532
  readonly initialized: boolean;
518
533
  readonly name: string;
@@ -567,6 +582,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
567
582
  [x: string]: string | undefined;
568
583
  } | undefined;
569
584
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
585
+ } & {
586
+ getConf(arg: string): any;
570
587
  } & {
571
588
  readonly initialized: boolean;
572
589
  readonly name: string;
@@ -625,6 +642,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
625
642
  [x: string]: string | undefined;
626
643
  } | undefined;
627
644
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
645
+ } & {
646
+ getConf(arg: string): any;
628
647
  } & {
629
648
  readonly initialized: boolean;
630
649
  readonly name: string;
@@ -656,9 +675,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
656
675
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
657
676
  setLoadingP(p?: Promise<void> | undefined): void;
658
677
  load(): Promise<void>;
659
- /**
678
+ loadPre(): Promise<void>;
679
+ } & {
680
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
681
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
682
+ [x: string]: string | undefined;
683
+ }>;
684
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
685
+ [x: string]: string | undefined;
686
+ }>; /**
660
687
  * #action
661
688
  */
689
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
690
+ }, {
691
+ readonly assemblyNameMap: Record<string, ({
692
+ configuration: any;
693
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
694
+ error: unknown;
695
+ loaded: boolean;
696
+ loadingP: Promise<void> | undefined;
697
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
698
+ refNameAliases: {
699
+ [x: string]: string | undefined;
700
+ } | undefined;
701
+ lowerCaseRefNameAliases: {
702
+ [x: string]: string | undefined;
703
+ } | undefined;
704
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
705
+ } & {
706
+ getConf(arg: string): any;
707
+ } & {
708
+ readonly initialized: boolean;
709
+ readonly name: string;
710
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
711
+ readonly aliases: string[];
712
+ readonly displayName: string | undefined;
713
+ hasName(name: string): boolean;
714
+ readonly allAliases: string[];
715
+ readonly allRefNames: string[] | undefined;
716
+ readonly lowerCaseRefNames: string[] | undefined;
717
+ readonly allRefNamesWithLowerCase: string[] | undefined;
718
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
719
+ readonly refNameColors: string[];
720
+ } & {
721
+ readonly refNames: string[] | undefined;
722
+ } & {
723
+ getCanonicalRefName(refName: string): string | undefined;
724
+ getRefNameColor(refName: string): string | undefined;
725
+ isValidRefName(refName: string): boolean;
726
+ } & {
727
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
728
+ setError(e: unknown): void;
729
+ setRegions(regions: Region[]): void;
730
+ setRefNameAliases(aliases: {
731
+ [x: string]: string | undefined;
732
+ }, lcAliases: {
733
+ [x: string]: string | undefined;
734
+ }): void;
735
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
736
+ setLoadingP(p?: Promise<void> | undefined): void;
737
+ load(): Promise<void>;
662
738
  loadPre(): Promise<void>;
663
739
  } & {
664
740
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -668,120 +744,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
668
744
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
669
745
  [x: string]: string | undefined;
670
746
  }>;
671
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
672
- }, {
673
- readonly assemblyNameMap: {
674
- [key: string]: ({
675
- configuration: any;
676
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
677
- error: unknown;
678
- loaded: boolean;
679
- loadingP: Promise<void> | undefined;
680
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
681
- /** Session mixin MST type for a session that manages multiple views */
682
- refNameAliases: {
683
- [x: string]: string | undefined;
684
- } | undefined;
685
- lowerCaseRefNameAliases: {
686
- [x: string]: string | undefined;
687
- } | undefined;
688
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
689
- } & {
690
- readonly initialized: boolean;
691
- readonly name: string;
692
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
693
- readonly aliases: string[];
694
- readonly displayName: string | undefined;
695
- hasName(name: string): boolean;
696
- readonly allAliases: string[];
697
- readonly allRefNames: string[] | undefined;
698
- readonly lowerCaseRefNames: string[] | undefined;
699
- readonly allRefNamesWithLowerCase: string[] | undefined;
700
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
701
- readonly refNameColors: string[];
702
- } & {
703
- readonly refNames: string[] | undefined;
704
- } & {
705
- getCanonicalRefName(refName: string): string | undefined;
706
- getRefNameColor(refName: string): string | undefined;
707
- isValidRefName(refName: string): boolean;
708
- } & {
709
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
710
- setError(e: unknown): void;
711
- setRegions(regions: Region[]): void;
712
- setRefNameAliases(aliases: {
713
- [x: string]: string | undefined;
714
- }, lcAliases: {
715
- [x: string]: string | undefined;
716
- }): void;
717
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
718
- setLoadingP(p?: Promise<void> | undefined): void;
719
- load(): Promise<void>;
720
- loadPre(): Promise<void>;
721
- } & {
722
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
723
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
724
- [x: string]: string | undefined;
725
- }>;
726
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
727
- [x: string]: string | undefined;
728
- }>;
729
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
730
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
731
- }, {
732
- error: unknown;
733
- loaded: boolean;
734
- loadingP: Promise<void> | undefined;
735
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
736
- refNameAliases: {
737
- [x: string]: string | undefined;
738
- } | undefined;
739
- lowerCaseRefNameAliases: {
740
- [x: string]: string | undefined;
741
- } | undefined;
742
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
743
- } & {
744
- readonly initialized: boolean;
745
- readonly name: string;
746
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
747
- readonly aliases: string[];
748
- readonly displayName: string | undefined;
749
- hasName(name: string): boolean;
750
- readonly allAliases: string[];
751
- readonly allRefNames: string[] | undefined;
752
- readonly lowerCaseRefNames: string[] | undefined;
753
- readonly allRefNamesWithLowerCase: string[] | undefined;
754
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
755
- readonly refNameColors: string[];
756
- } & {
757
- readonly refNames: string[] | undefined;
758
- } & {
759
- getCanonicalRefName(refName: string): string | undefined;
760
- getRefNameColor(refName: string): string | undefined;
761
- isValidRefName(refName: string): boolean;
762
- } & {
763
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
764
- setError(e: unknown): void;
765
- setRegions(regions: Region[]): void;
766
- setRefNameAliases(aliases: {
767
- [x: string]: string | undefined;
768
- }, lcAliases: {
769
- [x: string]: string | undefined;
770
- }): void;
771
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
772
- setLoadingP(p?: Promise<void> | undefined): void;
773
- load(): Promise<void>;
774
- loadPre(): Promise<void>;
775
- } & {
776
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
777
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
778
- [x: string]: string | undefined;
779
- }>;
780
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
781
- [x: string]: string | undefined;
782
- }>;
783
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
784
- };
747
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
748
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
749
+ }, {
750
+ error: unknown;
751
+ loaded: boolean;
752
+ loadingP: Promise<void> | undefined;
753
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
754
+ refNameAliases: {
755
+ [x: string]: string | undefined;
756
+ } | undefined;
757
+ lowerCaseRefNameAliases: {
758
+ [x: string]: string | undefined;
759
+ } | undefined;
760
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
761
+ } & {
762
+ getConf(arg: string): any;
763
+ } & {
764
+ readonly initialized: boolean;
765
+ readonly name: string;
766
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
767
+ readonly aliases: string[];
768
+ readonly displayName: string | undefined;
769
+ hasName(name: string): boolean;
770
+ readonly allAliases: string[];
771
+ readonly allRefNames: string[] | undefined;
772
+ readonly lowerCaseRefNames: string[] | undefined;
773
+ readonly allRefNamesWithLowerCase: string[] | undefined;
774
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
775
+ readonly refNameColors: string[];
776
+ } & {
777
+ readonly refNames: string[] | undefined;
778
+ } & {
779
+ getCanonicalRefName(refName: string): string | undefined;
780
+ getRefNameColor(refName: string): string | undefined;
781
+ isValidRefName(refName: string): boolean;
782
+ } & {
783
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
784
+ setError(e: unknown): void;
785
+ setRegions(regions: Region[]): void;
786
+ setRefNameAliases(aliases: {
787
+ [x: string]: string | undefined;
788
+ }, lcAliases: {
789
+ [x: string]: string | undefined;
790
+ }): void;
791
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
792
+ setLoadingP(p?: Promise<void> | undefined): void;
793
+ load(): Promise<void>;
794
+ loadPre(): Promise<void>;
795
+ } & {
796
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
797
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
798
+ [x: string]: string | undefined;
799
+ }>;
800
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
801
+ [x: string]: string | undefined;
802
+ }>;
803
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
785
804
  } & {
786
805
  get(asmName: string): ({
787
806
  configuration: any;
@@ -797,6 +816,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
797
816
  [x: string]: string | undefined;
798
817
  } | undefined;
799
818
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
819
+ } & {
820
+ getConf(arg: string): any;
800
821
  } & {
801
822
  readonly initialized: boolean;
802
823
  readonly name: string;
@@ -851,6 +872,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
851
872
  [x: string]: string | undefined;
852
873
  } | undefined;
853
874
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
875
+ } & {
876
+ getConf(arg: string): any;
854
877
  } & {
855
878
  readonly initialized: boolean;
856
879
  readonly name: string;
@@ -914,6 +937,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
914
937
  [x: string]: string | undefined;
915
938
  } | undefined;
916
939
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
940
+ } & {
941
+ getConf(arg: string): any;
917
942
  } & {
918
943
  readonly initialized: boolean;
919
944
  readonly name: string;
@@ -968,6 +993,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
968
993
  [x: string]: string | undefined;
969
994
  } | undefined;
970
995
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
996
+ } & {
997
+ getConf(arg: string): any;
971
998
  } & {
972
999
  readonly initialized: boolean;
973
1000
  readonly name: string;
@@ -1038,6 +1065,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1038
1065
  [x: string]: string | undefined;
1039
1066
  } | undefined;
1040
1067
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1068
+ } & {
1069
+ getConf(arg: string): any;
1041
1070
  } & {
1042
1071
  readonly initialized: boolean;
1043
1072
  readonly name: string;
@@ -1092,6 +1121,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1092
1121
  [x: string]: string | undefined;
1093
1122
  } | undefined;
1094
1123
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1124
+ } & {
1125
+ getConf(arg: string): any;
1095
1126
  } & {
1096
1127
  readonly initialized: boolean;
1097
1128
  readonly name: string;
@@ -1169,6 +1200,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1169
1200
  [x: string]: string | undefined;
1170
1201
  } | undefined;
1171
1202
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1203
+ } & {
1204
+ getConf(arg: string): any;
1172
1205
  } & {
1173
1206
  readonly initialized: boolean;
1174
1207
  readonly name: string;
@@ -1200,9 +1233,66 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1200
1233
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1201
1234
  setLoadingP(p?: Promise<void> | undefined): void;
1202
1235
  load(): Promise<void>;
1203
- /**
1236
+ loadPre(): Promise<void>;
1237
+ } & {
1238
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1239
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1240
+ [x: string]: string | undefined;
1241
+ }>;
1242
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1243
+ [x: string]: string | undefined;
1244
+ }>; /**
1204
1245
  * #action
1205
1246
  */
1247
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1248
+ }, {
1249
+ readonly assemblyNameMap: Record<string, ({
1250
+ configuration: any;
1251
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1252
+ error: unknown;
1253
+ loaded: boolean;
1254
+ loadingP: Promise<void> | undefined;
1255
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1256
+ refNameAliases: {
1257
+ [x: string]: string | undefined;
1258
+ } | undefined;
1259
+ lowerCaseRefNameAliases: {
1260
+ [x: string]: string | undefined;
1261
+ } | undefined;
1262
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1263
+ } & {
1264
+ getConf(arg: string): any;
1265
+ } & {
1266
+ readonly initialized: boolean;
1267
+ readonly name: string;
1268
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1269
+ readonly aliases: string[];
1270
+ readonly displayName: string | undefined;
1271
+ hasName(name: string): boolean;
1272
+ readonly allAliases: string[];
1273
+ readonly allRefNames: string[] | undefined;
1274
+ readonly lowerCaseRefNames: string[] | undefined;
1275
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1276
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1277
+ readonly refNameColors: string[];
1278
+ } & {
1279
+ readonly refNames: string[] | undefined;
1280
+ } & {
1281
+ getCanonicalRefName(refName: string): string | undefined;
1282
+ getRefNameColor(refName: string): string | undefined;
1283
+ isValidRefName(refName: string): boolean;
1284
+ } & {
1285
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1286
+ setError(e: unknown): void;
1287
+ setRegions(regions: Region[]): void;
1288
+ setRefNameAliases(aliases: {
1289
+ [x: string]: string | undefined;
1290
+ }, lcAliases: {
1291
+ [x: string]: string | undefined;
1292
+ }): void;
1293
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1294
+ setLoadingP(p?: Promise<void> | undefined): void;
1295
+ load(): Promise<void>;
1206
1296
  loadPre(): Promise<void>;
1207
1297
  } & {
1208
1298
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
@@ -1212,120 +1302,63 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1212
1302
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1213
1303
  [x: string]: string | undefined;
1214
1304
  }>;
1215
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1216
- }, {
1217
- readonly assemblyNameMap: {
1218
- [key: string]: ({
1219
- configuration: any;
1220
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1221
- error: unknown;
1222
- loaded: boolean;
1223
- loadingP: Promise<void> | undefined;
1224
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1225
- /** Session mixin MST type for a session that manages multiple views */
1226
- refNameAliases: {
1227
- [x: string]: string | undefined;
1228
- } | undefined;
1229
- lowerCaseRefNameAliases: {
1230
- [x: string]: string | undefined;
1231
- } | undefined;
1232
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1233
- } & {
1234
- readonly initialized: boolean;
1235
- readonly name: string;
1236
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1237
- readonly aliases: string[];
1238
- readonly displayName: string | undefined;
1239
- hasName(name: string): boolean;
1240
- readonly allAliases: string[];
1241
- readonly allRefNames: string[] | undefined;
1242
- readonly lowerCaseRefNames: string[] | undefined;
1243
- readonly allRefNamesWithLowerCase: string[] | undefined;
1244
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1245
- readonly refNameColors: string[];
1246
- } & {
1247
- readonly refNames: string[] | undefined;
1248
- } & {
1249
- getCanonicalRefName(refName: string): string | undefined;
1250
- getRefNameColor(refName: string): string | undefined;
1251
- isValidRefName(refName: string): boolean;
1252
- } & {
1253
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1254
- setError(e: unknown): void;
1255
- setRegions(regions: Region[]): void;
1256
- setRefNameAliases(aliases: {
1257
- [x: string]: string | undefined;
1258
- }, lcAliases: {
1259
- [x: string]: string | undefined;
1260
- }): void;
1261
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1262
- setLoadingP(p?: Promise<void> | undefined): void;
1263
- load(): Promise<void>;
1264
- loadPre(): Promise<void>;
1265
- } & {
1266
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1267
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1268
- [x: string]: string | undefined;
1269
- }>;
1270
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1271
- [x: string]: string | undefined;
1272
- }>;
1273
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1274
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1275
- }, {
1276
- error: unknown;
1277
- loaded: boolean;
1278
- loadingP: Promise<void> | undefined;
1279
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1280
- refNameAliases: {
1281
- [x: string]: string | undefined;
1282
- } | undefined;
1283
- lowerCaseRefNameAliases: {
1284
- [x: string]: string | undefined;
1285
- } | undefined;
1286
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1287
- } & {
1288
- readonly initialized: boolean;
1289
- readonly name: string;
1290
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1291
- readonly aliases: string[];
1292
- readonly displayName: string | undefined;
1293
- hasName(name: string): boolean;
1294
- readonly allAliases: string[];
1295
- readonly allRefNames: string[] | undefined;
1296
- readonly lowerCaseRefNames: string[] | undefined;
1297
- readonly allRefNamesWithLowerCase: string[] | undefined;
1298
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1299
- readonly refNameColors: string[];
1300
- } & {
1301
- readonly refNames: string[] | undefined;
1302
- } & {
1303
- getCanonicalRefName(refName: string): string | undefined;
1304
- getRefNameColor(refName: string): string | undefined;
1305
- isValidRefName(refName: string): boolean;
1306
- } & {
1307
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1308
- setError(e: unknown): void;
1309
- setRegions(regions: Region[]): void;
1310
- setRefNameAliases(aliases: {
1311
- [x: string]: string | undefined;
1312
- }, lcAliases: {
1313
- [x: string]: string | undefined;
1314
- }): void;
1315
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1316
- setLoadingP(p?: Promise<void> | undefined): void;
1317
- load(): Promise<void>;
1318
- loadPre(): Promise<void>;
1319
- } & {
1320
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1321
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1322
- [x: string]: string | undefined;
1323
- }>;
1324
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1325
- [x: string]: string | undefined;
1326
- }>;
1327
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1328
- };
1305
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1306
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1307
+ }, {
1308
+ error: unknown;
1309
+ loaded: boolean;
1310
+ loadingP: Promise<void> | undefined;
1311
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1312
+ refNameAliases: {
1313
+ [x: string]: string | undefined;
1314
+ } | undefined;
1315
+ lowerCaseRefNameAliases: {
1316
+ [x: string]: string | undefined;
1317
+ } | undefined;
1318
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1319
+ } & {
1320
+ getConf(arg: string): any;
1321
+ } & {
1322
+ readonly initialized: boolean;
1323
+ readonly name: string;
1324
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1325
+ readonly aliases: string[];
1326
+ readonly displayName: string | undefined;
1327
+ hasName(name: string): boolean;
1328
+ readonly allAliases: string[];
1329
+ readonly allRefNames: string[] | undefined;
1330
+ readonly lowerCaseRefNames: string[] | undefined;
1331
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1332
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1333
+ readonly refNameColors: string[];
1334
+ } & {
1335
+ readonly refNames: string[] | undefined;
1336
+ } & {
1337
+ getCanonicalRefName(refName: string): string | undefined;
1338
+ getRefNameColor(refName: string): string | undefined;
1339
+ isValidRefName(refName: string): boolean;
1340
+ } & {
1341
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1342
+ setError(e: unknown): void;
1343
+ setRegions(regions: Region[]): void;
1344
+ setRefNameAliases(aliases: {
1345
+ [x: string]: string | undefined;
1346
+ }, lcAliases: {
1347
+ [x: string]: string | undefined;
1348
+ }): void;
1349
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1350
+ setLoadingP(p?: Promise<void> | undefined): void;
1351
+ load(): Promise<void>;
1352
+ loadPre(): Promise<void>;
1353
+ } & {
1354
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1355
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1356
+ [x: string]: string | undefined;
1357
+ }>;
1358
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1359
+ [x: string]: string | undefined;
1360
+ }>;
1361
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1329
1362
  } & {
1330
1363
  get(asmName: string): ({
1331
1364
  configuration: any;
@@ -1341,6 +1374,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1341
1374
  [x: string]: string | undefined;
1342
1375
  } | undefined;
1343
1376
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1377
+ } & {
1378
+ getConf(arg: string): any;
1344
1379
  } & {
1345
1380
  readonly initialized: boolean;
1346
1381
  readonly name: string;
@@ -1395,6 +1430,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1395
1430
  [x: string]: string | undefined;
1396
1431
  } | undefined;
1397
1432
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1433
+ } & {
1434
+ getConf(arg: string): any;
1398
1435
  } & {
1399
1436
  readonly initialized: boolean;
1400
1437
  readonly name: string;
@@ -1458,6 +1495,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1458
1495
  [x: string]: string | undefined;
1459
1496
  } | undefined;
1460
1497
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1498
+ } & {
1499
+ getConf(arg: string): any;
1461
1500
  } & {
1462
1501
  readonly initialized: boolean;
1463
1502
  readonly name: string;
@@ -1512,6 +1551,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1512
1551
  [x: string]: string | undefined;
1513
1552
  } | undefined;
1514
1553
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1554
+ } & {
1555
+ getConf(arg: string): any;
1515
1556
  } & {
1516
1557
  readonly initialized: boolean;
1517
1558
  readonly name: string;
@@ -1582,6 +1623,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1582
1623
  [x: string]: string | undefined;
1583
1624
  } | undefined;
1584
1625
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1626
+ } & {
1627
+ getConf(arg: string): any;
1585
1628
  } & {
1586
1629
  readonly initialized: boolean;
1587
1630
  readonly name: string;
@@ -1636,6 +1679,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1636
1679
  [x: string]: string | undefined;
1637
1680
  } | undefined;
1638
1681
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1682
+ } & {
1683
+ getConf(arg: string): any;
1639
1684
  } & {
1640
1685
  readonly initialized: boolean;
1641
1686
  readonly name: string;
@@ -1736,9 +1781,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1736
1781
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>)[];
1737
1782
  } & {
1738
1783
  setSelection(thing: unknown): void;
1739
- clearSelection(): void; /**
1740
- * #action
1741
- */
1784
+ clearSelection(): void;
1742
1785
  } & {
1743
1786
  readonly visibleWidget: any;
1744
1787
  } & {