@jbrowse/product-core 2.13.1 → 2.15.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/RootModel/BaseRootModel.d.ts +110 -84
- package/dist/RootModel/InternetAccounts.d.ts +1 -1
- package/dist/RootModel/InternetAccounts.js +1 -2
- package/dist/Session/BaseSession.d.ts +6 -2
- package/dist/Session/Connections.d.ts +71 -11
- package/dist/Session/Connections.js +3 -1
- package/dist/Session/DialogQueue.d.ts +1 -1
- package/dist/Session/MultipleViews.d.ts +354 -266
- package/dist/Session/ReferenceManagement.d.ts +1 -1
- package/dist/Session/ReferenceManagement.js +6 -2
- package/dist/Session/SessionTracks.d.ts +344 -258
- package/dist/Session/Tracks.d.ts +343 -255
- package/dist/Session/Tracks.js +3 -1
- package/dist/ui/AboutDialogContents.js +9 -3
- package/dist/ui/FileInfoPanel.d.ts +1 -1
- package/dist/ui/FileInfoPanel.js +1 -1
- package/dist/ui/RefNameInfoDialog.js +5 -3
- package/esm/RootModel/BaseRootModel.d.ts +110 -84
- package/esm/RootModel/InternetAccounts.d.ts +1 -1
- package/esm/RootModel/InternetAccounts.js +1 -2
- package/esm/Session/BaseSession.d.ts +6 -2
- package/esm/Session/Connections.d.ts +71 -11
- package/esm/Session/Connections.js +3 -1
- package/esm/Session/DialogQueue.d.ts +1 -1
- package/esm/Session/MultipleViews.d.ts +354 -266
- package/esm/Session/ReferenceManagement.d.ts +1 -1
- package/esm/Session/ReferenceManagement.js +6 -2
- package/esm/Session/SessionTracks.d.ts +344 -258
- package/esm/Session/Tracks.d.ts +343 -255
- package/esm/Session/Tracks.js +3 -1
- package/esm/ui/AboutDialogContents.js +9 -3
- package/esm/ui/FileInfoPanel.d.ts +1 -1
- package/esm/ui/FileInfoPanel.js +1 -1
- package/esm/ui/RefNameInfoDialog.js +5 -3
- package/package.json +6 -6
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@@ -37,16 +37,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly"
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly" /**
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cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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getConf(arg: string): any;
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} & {
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getRefNameColor(refName: string): string | undefined;
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isValidRefName(refName: string): boolean;
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} & {
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setLoaded({
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setLoaded({ regions, refNameAliases, cytobands, }: {
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regions: import("@jbrowse/core/util").Region[];
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[x: string]: string;
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};
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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setError(e: unknown): void;
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setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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setRefNameAliases(aliases: {
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[x: string]: string;
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setCytobands(cytobands: import("@jbrowse/core/util"
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*/).Feature[]): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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setLoadingP(p?: Promise<void>): void;
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load(): Promise<void>;
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loadPre(): Promise<void>;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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} | undefined;
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cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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} | undefined;
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} & {
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getRefNameColor(refName: string): string | undefined;
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isValidRefName(refName: string): boolean;
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} & {
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setLoaded({
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setLoaded({ regions, refNameAliases, cytobands, }: {
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regions: import("@jbrowse/core/util").Region[];
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refNameAliases: {
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[x: string]: string;
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};
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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setError(e: unknown): void;
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setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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setRefNameAliases(aliases: {
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[x: string]: string;
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}): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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setLoadingP(p?: Promise<void>): void;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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readonly assemblyNameMap: Record<string,
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readonly assemblyNameMap: Record<string, {
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configuration: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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* #action
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*/).BasicRegion[] | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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} & {
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getRefNameColor(refName: string): string | undefined;
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setLoaded({ regions, refNameAliases, cytobands, }: {
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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}): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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} & {
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} | undefined;
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} & {
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} & {
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};
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cytobands: import("@jbrowse/core/util").Feature[];
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}, lcAliases: {
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[x: string]: string | undefined;
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[x: string]: string | undefined;
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} & {
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[k: string]: string;
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} | undefined;
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setLoaded({
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setLoaded({ regions, refNameAliases, cytobands, }: {
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regions: import("@jbrowse/core/util").Region[];
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refNameAliases: {
|
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[x: string]: string;
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};
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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}, lcAliases: {
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[x: string]: string | undefined;
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[x: string]: string;
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}): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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@@ -406,12 +428,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string
|
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+
[x: string]: string;
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}>;
|
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getReverseRefNameMapForAdapter(adapterConf: {
|
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
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[x: string]: string
|
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436
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+
[x: string]: string;
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415
437
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}>;
|
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438
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
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readonly assemblyNamesList: any[];
|
|
@@ -422,16 +444,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
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422
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configuration: any;
|
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
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|
error: unknown;
|
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425
|
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loaded: boolean;
|
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426
447
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loadingP: Promise<void> | undefined;
|
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448
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
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428
449
|
refNameAliases: {
|
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429
|
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[x: string]: string
|
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430
|
-
} | undefined;
|
|
431
|
-
lowerCaseRefNameAliases: {
|
|
432
|
-
[x: string]: string | undefined;
|
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450
|
+
[x: string]: string;
|
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433
451
|
} | undefined;
|
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434
452
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
453
|
+
} & {
|
|
454
|
+
readonly lowerCaseRefNameAliases: {
|
|
455
|
+
[k: string]: string;
|
|
456
|
+
} | undefined;
|
|
435
457
|
} & {
|
|
436
458
|
getConf(arg: string): any;
|
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437
459
|
} & {
|
|
@@ -454,13 +476,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
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454
476
|
getRefNameColor(refName: string): string | undefined;
|
|
455
477
|
isValidRefName(refName: string): boolean;
|
|
456
478
|
} & {
|
|
457
|
-
setLoaded({
|
|
479
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
480
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
481
|
+
refNameAliases: {
|
|
482
|
+
[x: string]: string;
|
|
483
|
+
};
|
|
484
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
485
|
+
}): void;
|
|
458
486
|
setError(e: unknown): void;
|
|
459
487
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
460
488
|
setRefNameAliases(aliases: {
|
|
461
|
-
[x: string]: string
|
|
462
|
-
}, lcAliases: {
|
|
463
|
-
[x: string]: string | undefined;
|
|
489
|
+
[x: string]: string;
|
|
464
490
|
}): void;
|
|
465
491
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
466
492
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -473,27 +499,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
473
499
|
getRefNameMapForAdapter(adapterConf: {
|
|
474
500
|
[x: string]: unknown;
|
|
475
501
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
476
|
-
[x: string]: string
|
|
502
|
+
[x: string]: string;
|
|
477
503
|
}>;
|
|
478
504
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
479
505
|
[x: string]: unknown;
|
|
480
506
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
481
|
-
[x: string]: string
|
|
507
|
+
[x: string]: string;
|
|
482
508
|
}>;
|
|
483
509
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
484
510
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
485
511
|
}, {
|
|
486
512
|
error: unknown;
|
|
487
|
-
loaded: boolean;
|
|
488
513
|
loadingP: Promise<void> | undefined;
|
|
489
514
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
490
515
|
refNameAliases: {
|
|
491
|
-
[x: string]: string
|
|
492
|
-
} | undefined;
|
|
493
|
-
lowerCaseRefNameAliases: {
|
|
494
|
-
[x: string]: string | undefined;
|
|
516
|
+
[x: string]: string;
|
|
495
517
|
} | undefined;
|
|
496
518
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
519
|
+
} & {
|
|
520
|
+
readonly lowerCaseRefNameAliases: {
|
|
521
|
+
[k: string]: string;
|
|
522
|
+
} | undefined;
|
|
497
523
|
} & {
|
|
498
524
|
getConf(arg: string): any;
|
|
499
525
|
} & {
|
|
@@ -516,13 +542,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
516
542
|
getRefNameColor(refName: string): string | undefined;
|
|
517
543
|
isValidRefName(refName: string): boolean;
|
|
518
544
|
} & {
|
|
519
|
-
setLoaded({
|
|
545
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
546
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
547
|
+
refNameAliases: {
|
|
548
|
+
[x: string]: string;
|
|
549
|
+
};
|
|
550
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
551
|
+
}): void;
|
|
520
552
|
setError(e: unknown): void;
|
|
521
553
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
522
554
|
setRefNameAliases(aliases: {
|
|
523
|
-
[x: string]: string
|
|
524
|
-
}, lcAliases: {
|
|
525
|
-
[x: string]: string | undefined;
|
|
555
|
+
[x: string]: string;
|
|
526
556
|
}): void;
|
|
527
557
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
528
558
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -535,12 +565,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
535
565
|
getRefNameMapForAdapter(adapterConf: {
|
|
536
566
|
[x: string]: unknown;
|
|
537
567
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
538
|
-
[x: string]: string
|
|
568
|
+
[x: string]: string;
|
|
539
569
|
}>;
|
|
540
570
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
541
571
|
[x: string]: unknown;
|
|
542
572
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
543
|
-
[x: string]: string
|
|
573
|
+
[x: string]: string;
|
|
544
574
|
}>;
|
|
545
575
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
546
576
|
getRefNameMapForAdapter(adapterConf: {
|
|
@@ -549,7 +579,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
549
579
|
signal?: AbortSignal;
|
|
550
580
|
sessionId: string;
|
|
551
581
|
}): Promise<{
|
|
552
|
-
[x: string]: string
|
|
582
|
+
[x: string]: string;
|
|
553
583
|
} | undefined>;
|
|
554
584
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
555
585
|
[x: string]: unknown;
|
|
@@ -557,7 +587,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
557
587
|
signal?: AbortSignal;
|
|
558
588
|
sessionId: string;
|
|
559
589
|
}): Promise<{
|
|
560
|
-
[x: string]: string
|
|
590
|
+
[x: string]: string;
|
|
561
591
|
} | undefined>;
|
|
562
592
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
563
593
|
} & {
|
|
@@ -570,16 +600,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
570
600
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
571
601
|
}, {
|
|
572
602
|
error: unknown;
|
|
573
|
-
loaded: boolean;
|
|
574
603
|
loadingP: Promise<void> | undefined;
|
|
575
|
-
volatileRegions: import("@jbrowse/core/assemblyManager/assembly"
|
|
604
|
+
volatileRegions: import("@jbrowse/core/assemblyManager/assembly" /**
|
|
605
|
+
* #property
|
|
606
|
+
*/).BasicRegion[] | undefined;
|
|
576
607
|
refNameAliases: {
|
|
577
|
-
[x: string]: string
|
|
578
|
-
} | undefined;
|
|
579
|
-
lowerCaseRefNameAliases: {
|
|
580
|
-
[x: string]: string | undefined;
|
|
608
|
+
[x: string]: string;
|
|
581
609
|
} | undefined;
|
|
582
610
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
611
|
+
} & {
|
|
612
|
+
readonly lowerCaseRefNameAliases: {
|
|
613
|
+
[k: string]: string;
|
|
614
|
+
} | undefined;
|
|
583
615
|
} & {
|
|
584
616
|
getConf(arg: string): any;
|
|
585
617
|
} & {
|
|
@@ -602,17 +634,19 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
602
634
|
getRefNameColor(refName: string): string | undefined;
|
|
603
635
|
isValidRefName(refName: string): boolean;
|
|
604
636
|
} & {
|
|
605
|
-
setLoaded({
|
|
637
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
638
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
639
|
+
refNameAliases: {
|
|
640
|
+
[x: string]: string;
|
|
641
|
+
};
|
|
642
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
643
|
+
}): void;
|
|
606
644
|
setError(e: unknown): void;
|
|
607
645
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
608
646
|
setRefNameAliases(aliases: {
|
|
609
|
-
[x: string]: string
|
|
610
|
-
}, lcAliases: {
|
|
611
|
-
[x: string]: string | undefined;
|
|
647
|
+
[x: string]: string;
|
|
612
648
|
}): void;
|
|
613
|
-
setCytobands(cytobands: import("@jbrowse/core/util"
|
|
614
|
-
* #action
|
|
615
|
-
*/).Feature[]): void;
|
|
649
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
616
650
|
setLoadingP(p?: Promise<void>): void;
|
|
617
651
|
load(): Promise<void>;
|
|
618
652
|
loadPre(): Promise<void>;
|
|
@@ -623,29 +657,29 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
623
657
|
getRefNameMapForAdapter(adapterConf: {
|
|
624
658
|
[x: string]: unknown;
|
|
625
659
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
626
|
-
[x: string]: string
|
|
660
|
+
[x: string]: string;
|
|
627
661
|
}>;
|
|
628
662
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
629
663
|
[x: string]: unknown;
|
|
630
664
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
631
|
-
[x: string]: string
|
|
665
|
+
[x: string]: string;
|
|
632
666
|
}>;
|
|
633
667
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
634
668
|
}, {
|
|
635
|
-
readonly assemblyNameMap: Record<string,
|
|
669
|
+
readonly assemblyNameMap: Record<string, {
|
|
636
670
|
configuration: any;
|
|
637
671
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
638
672
|
error: unknown;
|
|
639
|
-
loaded: boolean;
|
|
640
673
|
loadingP: Promise<void> | undefined;
|
|
641
674
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
642
675
|
refNameAliases: {
|
|
643
|
-
[x: string]: string
|
|
644
|
-
} | undefined;
|
|
645
|
-
lowerCaseRefNameAliases: {
|
|
646
|
-
[x: string]: string | undefined;
|
|
676
|
+
[x: string]: string;
|
|
647
677
|
} | undefined;
|
|
648
678
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
679
|
+
} & {
|
|
680
|
+
readonly lowerCaseRefNameAliases: {
|
|
681
|
+
[k: string]: string;
|
|
682
|
+
} | undefined;
|
|
649
683
|
} & {
|
|
650
684
|
getConf(arg: string): any;
|
|
651
685
|
} & {
|
|
@@ -668,13 +702,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
668
702
|
getRefNameColor(refName: string): string | undefined;
|
|
669
703
|
isValidRefName(refName: string): boolean;
|
|
670
704
|
} & {
|
|
671
|
-
setLoaded({
|
|
705
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
706
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
707
|
+
refNameAliases: {
|
|
708
|
+
[x: string]: string;
|
|
709
|
+
};
|
|
710
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
711
|
+
}): void;
|
|
672
712
|
setError(e: unknown): void;
|
|
673
713
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
674
714
|
setRefNameAliases(aliases: {
|
|
675
|
-
[x: string]: string
|
|
676
|
-
}, lcAliases: {
|
|
677
|
-
[x: string]: string | undefined;
|
|
715
|
+
[x: string]: string;
|
|
678
716
|
}): void;
|
|
679
717
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
680
718
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -687,27 +725,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
687
725
|
getRefNameMapForAdapter(adapterConf: {
|
|
688
726
|
[x: string]: unknown;
|
|
689
727
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
690
|
-
[x: string]: string
|
|
728
|
+
[x: string]: string;
|
|
691
729
|
}>;
|
|
692
730
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
693
731
|
[x: string]: unknown;
|
|
694
732
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
695
|
-
[x: string]: string
|
|
733
|
+
[x: string]: string;
|
|
696
734
|
}>;
|
|
697
735
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
698
736
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
699
737
|
}, {
|
|
700
738
|
error: unknown;
|
|
701
|
-
loaded: boolean;
|
|
702
739
|
loadingP: Promise<void> | undefined;
|
|
703
740
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
704
741
|
refNameAliases: {
|
|
705
|
-
[x: string]: string
|
|
706
|
-
} | undefined;
|
|
707
|
-
lowerCaseRefNameAliases: {
|
|
708
|
-
[x: string]: string | undefined;
|
|
742
|
+
[x: string]: string;
|
|
709
743
|
} | undefined;
|
|
710
744
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
745
|
+
} & {
|
|
746
|
+
readonly lowerCaseRefNameAliases: {
|
|
747
|
+
[k: string]: string;
|
|
748
|
+
} | undefined;
|
|
711
749
|
} & {
|
|
712
750
|
getConf(arg: string): any;
|
|
713
751
|
} & {
|
|
@@ -730,13 +768,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
730
768
|
getRefNameColor(refName: string): string | undefined;
|
|
731
769
|
isValidRefName(refName: string): boolean;
|
|
732
770
|
} & {
|
|
733
|
-
setLoaded({
|
|
771
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
772
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
773
|
+
refNameAliases: {
|
|
774
|
+
[x: string]: string;
|
|
775
|
+
};
|
|
776
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
777
|
+
}): void;
|
|
734
778
|
setError(e: unknown): void;
|
|
735
779
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
736
780
|
setRefNameAliases(aliases: {
|
|
737
|
-
[x: string]: string
|
|
738
|
-
}, lcAliases: {
|
|
739
|
-
[x: string]: string | undefined;
|
|
781
|
+
[x: string]: string;
|
|
740
782
|
}): void;
|
|
741
783
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
742
784
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -749,29 +791,29 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
749
791
|
getRefNameMapForAdapter(adapterConf: {
|
|
750
792
|
[x: string]: unknown;
|
|
751
793
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
752
|
-
[x: string]: string
|
|
794
|
+
[x: string]: string;
|
|
753
795
|
}>;
|
|
754
796
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
755
797
|
[x: string]: unknown;
|
|
756
798
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
757
|
-
[x: string]: string
|
|
799
|
+
[x: string]: string;
|
|
758
800
|
}>;
|
|
759
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized
|
|
801
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
760
802
|
} & {
|
|
761
803
|
get(asmName: string): ({
|
|
762
804
|
configuration: any;
|
|
763
805
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
764
806
|
error: unknown;
|
|
765
|
-
loaded: boolean;
|
|
766
807
|
loadingP: Promise<void> | undefined;
|
|
767
808
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
768
809
|
refNameAliases: {
|
|
769
|
-
[x: string]: string
|
|
770
|
-
} | undefined;
|
|
771
|
-
lowerCaseRefNameAliases: {
|
|
772
|
-
[x: string]: string | undefined;
|
|
810
|
+
[x: string]: string;
|
|
773
811
|
} | undefined;
|
|
774
812
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
813
|
+
} & {
|
|
814
|
+
readonly lowerCaseRefNameAliases: {
|
|
815
|
+
[k: string]: string;
|
|
816
|
+
} | undefined;
|
|
775
817
|
} & {
|
|
776
818
|
getConf(arg: string): any;
|
|
777
819
|
} & {
|
|
@@ -794,13 +836,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
794
836
|
getRefNameColor(refName: string): string | undefined;
|
|
795
837
|
isValidRefName(refName: string): boolean;
|
|
796
838
|
} & {
|
|
797
|
-
setLoaded({
|
|
839
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
840
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
841
|
+
refNameAliases: {
|
|
842
|
+
[x: string]: string;
|
|
843
|
+
};
|
|
844
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
845
|
+
}): void;
|
|
798
846
|
setError(e: unknown): void;
|
|
799
847
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
800
848
|
setRefNameAliases(aliases: {
|
|
801
|
-
[x: string]: string
|
|
802
|
-
}, lcAliases: {
|
|
803
|
-
[x: string]: string | undefined;
|
|
849
|
+
[x: string]: string;
|
|
804
850
|
}): void;
|
|
805
851
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
806
852
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -813,27 +859,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
813
859
|
getRefNameMapForAdapter(adapterConf: {
|
|
814
860
|
[x: string]: unknown;
|
|
815
861
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
816
|
-
[x: string]: string
|
|
862
|
+
[x: string]: string;
|
|
817
863
|
}>;
|
|
818
864
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
819
865
|
[x: string]: unknown;
|
|
820
866
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
821
|
-
[x: string]: string
|
|
867
|
+
[x: string]: string;
|
|
822
868
|
}>;
|
|
823
869
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
824
870
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
825
871
|
}, {
|
|
826
872
|
error: unknown;
|
|
827
|
-
loaded: boolean;
|
|
828
873
|
loadingP: Promise<void> | undefined;
|
|
829
874
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
830
875
|
refNameAliases: {
|
|
831
|
-
[x: string]: string
|
|
832
|
-
} | undefined;
|
|
833
|
-
lowerCaseRefNameAliases: {
|
|
834
|
-
[x: string]: string | undefined;
|
|
876
|
+
[x: string]: string;
|
|
835
877
|
} | undefined;
|
|
836
878
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
879
|
+
} & {
|
|
880
|
+
readonly lowerCaseRefNameAliases: {
|
|
881
|
+
[k: string]: string;
|
|
882
|
+
} | undefined;
|
|
837
883
|
} & {
|
|
838
884
|
getConf(arg: string): any;
|
|
839
885
|
} & {
|
|
@@ -856,13 +902,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
856
902
|
getRefNameColor(refName: string): string | undefined;
|
|
857
903
|
isValidRefName(refName: string): boolean;
|
|
858
904
|
} & {
|
|
859
|
-
setLoaded({
|
|
905
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
906
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
907
|
+
refNameAliases: {
|
|
908
|
+
[x: string]: string;
|
|
909
|
+
};
|
|
910
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
911
|
+
}): void;
|
|
860
912
|
setError(e: unknown): void;
|
|
861
913
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
862
914
|
setRefNameAliases(aliases: {
|
|
863
|
-
[x: string]: string
|
|
864
|
-
}, lcAliases: {
|
|
865
|
-
[x: string]: string | undefined;
|
|
915
|
+
[x: string]: string;
|
|
866
916
|
}): void;
|
|
867
917
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
868
918
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -875,12 +925,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
875
925
|
getRefNameMapForAdapter(adapterConf: {
|
|
876
926
|
[x: string]: unknown;
|
|
877
927
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
878
|
-
[x: string]: string
|
|
928
|
+
[x: string]: string;
|
|
879
929
|
}>;
|
|
880
930
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
881
931
|
[x: string]: unknown;
|
|
882
932
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
883
|
-
[x: string]: string
|
|
933
|
+
[x: string]: string;
|
|
884
934
|
}>;
|
|
885
935
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
886
936
|
readonly assemblyNamesList: any[];
|
|
@@ -891,16 +941,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
891
941
|
configuration: any;
|
|
892
942
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
893
943
|
error: unknown;
|
|
894
|
-
loaded: boolean;
|
|
895
944
|
loadingP: Promise<void> | undefined;
|
|
896
945
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
897
946
|
refNameAliases: {
|
|
898
|
-
[x: string]: string
|
|
899
|
-
} | undefined;
|
|
900
|
-
lowerCaseRefNameAliases: {
|
|
901
|
-
[x: string]: string | undefined;
|
|
947
|
+
[x: string]: string;
|
|
902
948
|
} | undefined;
|
|
903
949
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
950
|
+
} & {
|
|
951
|
+
readonly lowerCaseRefNameAliases: {
|
|
952
|
+
[k: string]: string;
|
|
953
|
+
} | undefined;
|
|
904
954
|
} & {
|
|
905
955
|
getConf(arg: string): any;
|
|
906
956
|
} & {
|
|
@@ -923,13 +973,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
923
973
|
getRefNameColor(refName: string): string | undefined;
|
|
924
974
|
isValidRefName(refName: string): boolean;
|
|
925
975
|
} & {
|
|
926
|
-
setLoaded({
|
|
976
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
977
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
978
|
+
refNameAliases: {
|
|
979
|
+
[x: string]: string;
|
|
980
|
+
};
|
|
981
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
982
|
+
}): void;
|
|
927
983
|
setError(e: unknown): void;
|
|
928
984
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
929
985
|
setRefNameAliases(aliases: {
|
|
930
|
-
[x: string]: string
|
|
931
|
-
}, lcAliases: {
|
|
932
|
-
[x: string]: string | undefined;
|
|
986
|
+
[x: string]: string;
|
|
933
987
|
}): void;
|
|
934
988
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
935
989
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -942,27 +996,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
942
996
|
getRefNameMapForAdapter(adapterConf: {
|
|
943
997
|
[x: string]: unknown;
|
|
944
998
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
945
|
-
[x: string]: string
|
|
999
|
+
[x: string]: string;
|
|
946
1000
|
}>;
|
|
947
1001
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
948
1002
|
[x: string]: unknown;
|
|
949
1003
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
950
|
-
[x: string]: string
|
|
1004
|
+
[x: string]: string;
|
|
951
1005
|
}>;
|
|
952
1006
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
953
1007
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
954
1008
|
}, {
|
|
955
1009
|
error: unknown;
|
|
956
|
-
loaded: boolean;
|
|
957
1010
|
loadingP: Promise<void> | undefined;
|
|
958
1011
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
959
1012
|
refNameAliases: {
|
|
960
|
-
[x: string]: string
|
|
961
|
-
} | undefined;
|
|
962
|
-
lowerCaseRefNameAliases: {
|
|
963
|
-
[x: string]: string | undefined;
|
|
1013
|
+
[x: string]: string;
|
|
964
1014
|
} | undefined;
|
|
965
1015
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1016
|
+
} & {
|
|
1017
|
+
readonly lowerCaseRefNameAliases: {
|
|
1018
|
+
[k: string]: string;
|
|
1019
|
+
} | undefined;
|
|
966
1020
|
} & {
|
|
967
1021
|
getConf(arg: string): any;
|
|
968
1022
|
} & {
|
|
@@ -985,13 +1039,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
985
1039
|
getRefNameColor(refName: string): string | undefined;
|
|
986
1040
|
isValidRefName(refName: string): boolean;
|
|
987
1041
|
} & {
|
|
988
|
-
setLoaded({
|
|
1042
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1043
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1044
|
+
refNameAliases: {
|
|
1045
|
+
[x: string]: string;
|
|
1046
|
+
};
|
|
1047
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1048
|
+
}): void;
|
|
989
1049
|
setError(e: unknown): void;
|
|
990
1050
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
991
1051
|
setRefNameAliases(aliases: {
|
|
992
|
-
[x: string]: string
|
|
993
|
-
}, lcAliases: {
|
|
994
|
-
[x: string]: string | undefined;
|
|
1052
|
+
[x: string]: string;
|
|
995
1053
|
}): void;
|
|
996
1054
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
997
1055
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1004,12 +1062,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1004
1062
|
getRefNameMapForAdapter(adapterConf: {
|
|
1005
1063
|
[x: string]: unknown;
|
|
1006
1064
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1007
|
-
[x: string]: string
|
|
1065
|
+
[x: string]: string;
|
|
1008
1066
|
}>;
|
|
1009
1067
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1010
1068
|
[x: string]: unknown;
|
|
1011
1069
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1012
|
-
[x: string]: string
|
|
1070
|
+
[x: string]: string;
|
|
1013
1071
|
}>;
|
|
1014
1072
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1015
1073
|
getRefNameMapForAdapter(adapterConf: {
|
|
@@ -1018,7 +1076,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1018
1076
|
signal?: AbortSignal;
|
|
1019
1077
|
sessionId: string;
|
|
1020
1078
|
}): Promise<{
|
|
1021
|
-
[x: string]: string
|
|
1079
|
+
[x: string]: string;
|
|
1022
1080
|
} | undefined>;
|
|
1023
1081
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1024
1082
|
[x: string]: unknown;
|
|
@@ -1026,7 +1084,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1026
1084
|
signal?: AbortSignal;
|
|
1027
1085
|
sessionId: string;
|
|
1028
1086
|
}): Promise<{
|
|
1029
|
-
[x: string]: string
|
|
1087
|
+
[x: string]: string;
|
|
1030
1088
|
} | undefined>;
|
|
1031
1089
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
1032
1090
|
} & {
|
|
@@ -1056,16 +1114,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1056
1114
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1057
1115
|
}, {
|
|
1058
1116
|
error: unknown;
|
|
1059
|
-
loaded: boolean;
|
|
1060
1117
|
loadingP: Promise<void> | undefined;
|
|
1061
1118
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1062
1119
|
refNameAliases: {
|
|
1063
|
-
[x: string]: string
|
|
1064
|
-
} | undefined;
|
|
1065
|
-
lowerCaseRefNameAliases: {
|
|
1066
|
-
[x: string]: string | undefined;
|
|
1120
|
+
[x: string]: string;
|
|
1067
1121
|
} | undefined;
|
|
1068
1122
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1123
|
+
} & {
|
|
1124
|
+
readonly lowerCaseRefNameAliases: {
|
|
1125
|
+
[k: string]: string;
|
|
1126
|
+
} | undefined;
|
|
1069
1127
|
} & {
|
|
1070
1128
|
getConf(arg: string): any;
|
|
1071
1129
|
} & {
|
|
@@ -1088,13 +1146,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1088
1146
|
getRefNameColor(refName: string): string | undefined;
|
|
1089
1147
|
isValidRefName(refName: string): boolean;
|
|
1090
1148
|
} & {
|
|
1091
|
-
setLoaded({
|
|
1149
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1150
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1151
|
+
refNameAliases: {
|
|
1152
|
+
[x: string]: string;
|
|
1153
|
+
};
|
|
1154
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1155
|
+
}): void;
|
|
1092
1156
|
setError(e: unknown): void;
|
|
1093
1157
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1094
1158
|
setRefNameAliases(aliases: {
|
|
1095
|
-
[x: string]: string
|
|
1096
|
-
}, lcAliases: {
|
|
1097
|
-
[x: string]: string | undefined;
|
|
1159
|
+
[x: string]: string;
|
|
1098
1160
|
}): void;
|
|
1099
1161
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1100
1162
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1107,29 +1169,29 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1107
1169
|
getRefNameMapForAdapter(adapterConf: {
|
|
1108
1170
|
[x: string]: unknown;
|
|
1109
1171
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1110
|
-
[x: string]: string
|
|
1172
|
+
[x: string]: string;
|
|
1111
1173
|
}>;
|
|
1112
1174
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1113
1175
|
[x: string]: unknown;
|
|
1114
1176
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1115
|
-
[x: string]: string
|
|
1177
|
+
[x: string]: string;
|
|
1116
1178
|
}>;
|
|
1117
1179
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1118
1180
|
}, {
|
|
1119
|
-
readonly assemblyNameMap: Record<string,
|
|
1181
|
+
readonly assemblyNameMap: Record<string, {
|
|
1120
1182
|
configuration: any;
|
|
1121
1183
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1122
1184
|
error: unknown;
|
|
1123
|
-
loaded: boolean;
|
|
1124
1185
|
loadingP: Promise<void> | undefined;
|
|
1125
1186
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1126
1187
|
refNameAliases: {
|
|
1127
|
-
[x: string]: string
|
|
1128
|
-
} | undefined;
|
|
1129
|
-
lowerCaseRefNameAliases: {
|
|
1130
|
-
[x: string]: string | undefined;
|
|
1188
|
+
[x: string]: string;
|
|
1131
1189
|
} | undefined;
|
|
1132
1190
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1191
|
+
} & {
|
|
1192
|
+
readonly lowerCaseRefNameAliases: {
|
|
1193
|
+
[k: string]: string;
|
|
1194
|
+
} | undefined;
|
|
1133
1195
|
} & {
|
|
1134
1196
|
getConf(arg: string): any;
|
|
1135
1197
|
} & {
|
|
@@ -1152,13 +1214,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1152
1214
|
getRefNameColor(refName: string): string | undefined;
|
|
1153
1215
|
isValidRefName(refName: string): boolean;
|
|
1154
1216
|
} & {
|
|
1155
|
-
setLoaded({
|
|
1217
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1218
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1219
|
+
refNameAliases: {
|
|
1220
|
+
[x: string]: string;
|
|
1221
|
+
};
|
|
1222
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1223
|
+
}): void;
|
|
1156
1224
|
setError(e: unknown): void;
|
|
1157
1225
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1158
1226
|
setRefNameAliases(aliases: {
|
|
1159
|
-
[x: string]: string
|
|
1160
|
-
}, lcAliases: {
|
|
1161
|
-
[x: string]: string | undefined;
|
|
1227
|
+
[x: string]: string;
|
|
1162
1228
|
}): void;
|
|
1163
1229
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1164
1230
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1171,27 +1237,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1171
1237
|
getRefNameMapForAdapter(adapterConf: {
|
|
1172
1238
|
[x: string]: unknown;
|
|
1173
1239
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1174
|
-
[x: string]: string
|
|
1240
|
+
[x: string]: string;
|
|
1175
1241
|
}>;
|
|
1176
1242
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1177
1243
|
[x: string]: unknown;
|
|
1178
1244
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1179
|
-
[x: string]: string
|
|
1245
|
+
[x: string]: string;
|
|
1180
1246
|
}>;
|
|
1181
1247
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1182
1248
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1183
1249
|
}, {
|
|
1184
1250
|
error: unknown;
|
|
1185
|
-
loaded: boolean;
|
|
1186
1251
|
loadingP: Promise<void> | undefined;
|
|
1187
1252
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1188
1253
|
refNameAliases: {
|
|
1189
|
-
[x: string]: string
|
|
1190
|
-
} | undefined;
|
|
1191
|
-
lowerCaseRefNameAliases: {
|
|
1192
|
-
[x: string]: string | undefined;
|
|
1254
|
+
[x: string]: string;
|
|
1193
1255
|
} | undefined;
|
|
1194
1256
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1257
|
+
} & {
|
|
1258
|
+
readonly lowerCaseRefNameAliases: {
|
|
1259
|
+
[k: string]: string;
|
|
1260
|
+
} | undefined;
|
|
1195
1261
|
} & {
|
|
1196
1262
|
getConf(arg: string): any;
|
|
1197
1263
|
} & {
|
|
@@ -1214,13 +1280,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1214
1280
|
getRefNameColor(refName: string): string | undefined;
|
|
1215
1281
|
isValidRefName(refName: string): boolean;
|
|
1216
1282
|
} & {
|
|
1217
|
-
setLoaded({
|
|
1283
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1284
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1285
|
+
refNameAliases: {
|
|
1286
|
+
[x: string]: string;
|
|
1287
|
+
};
|
|
1288
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1289
|
+
}): void;
|
|
1218
1290
|
setError(e: unknown): void;
|
|
1219
1291
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1220
1292
|
setRefNameAliases(aliases: {
|
|
1221
|
-
[x: string]: string
|
|
1222
|
-
}, lcAliases: {
|
|
1223
|
-
[x: string]: string | undefined;
|
|
1293
|
+
[x: string]: string;
|
|
1224
1294
|
}): void;
|
|
1225
1295
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1226
1296
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1233,29 +1303,29 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1233
1303
|
getRefNameMapForAdapter(adapterConf: {
|
|
1234
1304
|
[x: string]: unknown;
|
|
1235
1305
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1236
|
-
[x: string]: string
|
|
1306
|
+
[x: string]: string;
|
|
1237
1307
|
}>;
|
|
1238
1308
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1239
1309
|
[x: string]: unknown;
|
|
1240
1310
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1241
|
-
[x: string]: string
|
|
1311
|
+
[x: string]: string;
|
|
1242
1312
|
}>;
|
|
1243
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized
|
|
1313
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
1244
1314
|
} & {
|
|
1245
1315
|
get(asmName: string): ({
|
|
1246
1316
|
configuration: any;
|
|
1247
1317
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1248
1318
|
error: unknown;
|
|
1249
|
-
loaded: boolean;
|
|
1250
1319
|
loadingP: Promise<void> | undefined;
|
|
1251
1320
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1252
1321
|
refNameAliases: {
|
|
1253
|
-
[x: string]: string
|
|
1254
|
-
} | undefined;
|
|
1255
|
-
lowerCaseRefNameAliases: {
|
|
1256
|
-
[x: string]: string | undefined;
|
|
1322
|
+
[x: string]: string;
|
|
1257
1323
|
} | undefined;
|
|
1258
1324
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1325
|
+
} & {
|
|
1326
|
+
readonly lowerCaseRefNameAliases: {
|
|
1327
|
+
[k: string]: string;
|
|
1328
|
+
} | undefined;
|
|
1259
1329
|
} & {
|
|
1260
1330
|
getConf(arg: string): any;
|
|
1261
1331
|
} & {
|
|
@@ -1278,13 +1348,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1278
1348
|
getRefNameColor(refName: string): string | undefined;
|
|
1279
1349
|
isValidRefName(refName: string): boolean;
|
|
1280
1350
|
} & {
|
|
1281
|
-
setLoaded({
|
|
1351
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1352
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1353
|
+
refNameAliases: {
|
|
1354
|
+
[x: string]: string;
|
|
1355
|
+
};
|
|
1356
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1357
|
+
}): void;
|
|
1282
1358
|
setError(e: unknown): void;
|
|
1283
1359
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1284
1360
|
setRefNameAliases(aliases: {
|
|
1285
|
-
[x: string]: string
|
|
1286
|
-
}, lcAliases: {
|
|
1287
|
-
[x: string]: string | undefined;
|
|
1361
|
+
[x: string]: string;
|
|
1288
1362
|
}): void;
|
|
1289
1363
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1290
1364
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1297,27 +1371,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1297
1371
|
getRefNameMapForAdapter(adapterConf: {
|
|
1298
1372
|
[x: string]: unknown;
|
|
1299
1373
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1300
|
-
[x: string]: string
|
|
1374
|
+
[x: string]: string;
|
|
1301
1375
|
}>;
|
|
1302
1376
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1303
1377
|
[x: string]: unknown;
|
|
1304
1378
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1305
|
-
[x: string]: string
|
|
1379
|
+
[x: string]: string;
|
|
1306
1380
|
}>;
|
|
1307
1381
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1308
1382
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1309
1383
|
}, {
|
|
1310
1384
|
error: unknown;
|
|
1311
|
-
loaded: boolean;
|
|
1312
1385
|
loadingP: Promise<void> | undefined;
|
|
1313
1386
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1314
1387
|
refNameAliases: {
|
|
1315
|
-
[x: string]: string
|
|
1316
|
-
} | undefined;
|
|
1317
|
-
lowerCaseRefNameAliases: {
|
|
1318
|
-
[x: string]: string | undefined;
|
|
1388
|
+
[x: string]: string;
|
|
1319
1389
|
} | undefined;
|
|
1320
1390
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1391
|
+
} & {
|
|
1392
|
+
readonly lowerCaseRefNameAliases: {
|
|
1393
|
+
[k: string]: string;
|
|
1394
|
+
} | undefined;
|
|
1321
1395
|
} & {
|
|
1322
1396
|
getConf(arg: string): any;
|
|
1323
1397
|
} & {
|
|
@@ -1340,13 +1414,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1340
1414
|
getRefNameColor(refName: string): string | undefined;
|
|
1341
1415
|
isValidRefName(refName: string): boolean;
|
|
1342
1416
|
} & {
|
|
1343
|
-
setLoaded({
|
|
1417
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1418
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1419
|
+
refNameAliases: {
|
|
1420
|
+
[x: string]: string;
|
|
1421
|
+
};
|
|
1422
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1423
|
+
}): void;
|
|
1344
1424
|
setError(e: unknown): void;
|
|
1345
1425
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1346
1426
|
setRefNameAliases(aliases: {
|
|
1347
|
-
[x: string]: string
|
|
1348
|
-
}, lcAliases: {
|
|
1349
|
-
[x: string]: string | undefined;
|
|
1427
|
+
[x: string]: string;
|
|
1350
1428
|
}): void;
|
|
1351
1429
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1352
1430
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1359,12 +1437,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1359
1437
|
getRefNameMapForAdapter(adapterConf: {
|
|
1360
1438
|
[x: string]: unknown;
|
|
1361
1439
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1362
|
-
[x: string]: string
|
|
1440
|
+
[x: string]: string;
|
|
1363
1441
|
}>;
|
|
1364
1442
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1365
1443
|
[x: string]: unknown;
|
|
1366
1444
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1367
|
-
[x: string]: string
|
|
1445
|
+
[x: string]: string;
|
|
1368
1446
|
}>;
|
|
1369
1447
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1370
1448
|
readonly assemblyNamesList: any[];
|
|
@@ -1375,16 +1453,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1375
1453
|
configuration: any;
|
|
1376
1454
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1377
1455
|
error: unknown;
|
|
1378
|
-
loaded: boolean;
|
|
1379
1456
|
loadingP: Promise<void> | undefined;
|
|
1380
1457
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1381
1458
|
refNameAliases: {
|
|
1382
|
-
[x: string]: string
|
|
1383
|
-
} | undefined;
|
|
1384
|
-
lowerCaseRefNameAliases: {
|
|
1385
|
-
[x: string]: string | undefined;
|
|
1459
|
+
[x: string]: string;
|
|
1386
1460
|
} | undefined;
|
|
1387
1461
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1462
|
+
} & {
|
|
1463
|
+
readonly lowerCaseRefNameAliases: {
|
|
1464
|
+
[k: string]: string;
|
|
1465
|
+
} | undefined;
|
|
1388
1466
|
} & {
|
|
1389
1467
|
getConf(arg: string): any;
|
|
1390
1468
|
} & {
|
|
@@ -1407,13 +1485,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1407
1485
|
getRefNameColor(refName: string): string | undefined;
|
|
1408
1486
|
isValidRefName(refName: string): boolean;
|
|
1409
1487
|
} & {
|
|
1410
|
-
setLoaded({
|
|
1488
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1489
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1490
|
+
refNameAliases: {
|
|
1491
|
+
[x: string]: string;
|
|
1492
|
+
};
|
|
1493
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1494
|
+
}): void;
|
|
1411
1495
|
setError(e: unknown): void;
|
|
1412
1496
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1413
1497
|
setRefNameAliases(aliases: {
|
|
1414
|
-
[x: string]: string
|
|
1415
|
-
}, lcAliases: {
|
|
1416
|
-
[x: string]: string | undefined;
|
|
1498
|
+
[x: string]: string;
|
|
1417
1499
|
}): void;
|
|
1418
1500
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1419
1501
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1426,27 +1508,27 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1426
1508
|
getRefNameMapForAdapter(adapterConf: {
|
|
1427
1509
|
[x: string]: unknown;
|
|
1428
1510
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1429
|
-
[x: string]: string
|
|
1511
|
+
[x: string]: string;
|
|
1430
1512
|
}>;
|
|
1431
1513
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1432
1514
|
[x: string]: unknown;
|
|
1433
1515
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1434
|
-
[x: string]: string
|
|
1516
|
+
[x: string]: string;
|
|
1435
1517
|
}>;
|
|
1436
1518
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1437
1519
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1438
1520
|
}, {
|
|
1439
1521
|
error: unknown;
|
|
1440
|
-
loaded: boolean;
|
|
1441
1522
|
loadingP: Promise<void> | undefined;
|
|
1442
1523
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1443
1524
|
refNameAliases: {
|
|
1444
|
-
[x: string]: string
|
|
1445
|
-
} | undefined;
|
|
1446
|
-
lowerCaseRefNameAliases: {
|
|
1447
|
-
[x: string]: string | undefined;
|
|
1525
|
+
[x: string]: string;
|
|
1448
1526
|
} | undefined;
|
|
1449
1527
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1528
|
+
} & {
|
|
1529
|
+
readonly lowerCaseRefNameAliases: {
|
|
1530
|
+
[k: string]: string;
|
|
1531
|
+
} | undefined;
|
|
1450
1532
|
} & {
|
|
1451
1533
|
getConf(arg: string): any;
|
|
1452
1534
|
} & {
|
|
@@ -1469,13 +1551,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1469
1551
|
getRefNameColor(refName: string): string | undefined;
|
|
1470
1552
|
isValidRefName(refName: string): boolean;
|
|
1471
1553
|
} & {
|
|
1472
|
-
setLoaded({
|
|
1554
|
+
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1555
|
+
regions: import("@jbrowse/core/util").Region[];
|
|
1556
|
+
refNameAliases: {
|
|
1557
|
+
[x: string]: string;
|
|
1558
|
+
};
|
|
1559
|
+
cytobands: import("@jbrowse/core/util").Feature[];
|
|
1560
|
+
}): void;
|
|
1473
1561
|
setError(e: unknown): void;
|
|
1474
1562
|
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1475
1563
|
setRefNameAliases(aliases: {
|
|
1476
|
-
[x: string]: string
|
|
1477
|
-
}, lcAliases: {
|
|
1478
|
-
[x: string]: string | undefined;
|
|
1564
|
+
[x: string]: string;
|
|
1479
1565
|
}): void;
|
|
1480
1566
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1481
1567
|
setLoadingP(p?: Promise<void>): void;
|
|
@@ -1488,12 +1574,12 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1488
1574
|
getRefNameMapForAdapter(adapterConf: {
|
|
1489
1575
|
[x: string]: unknown;
|
|
1490
1576
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1491
|
-
[x: string]: string
|
|
1577
|
+
[x: string]: string;
|
|
1492
1578
|
}>;
|
|
1493
1579
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1494
1580
|
[x: string]: unknown;
|
|
1495
1581
|
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1496
|
-
[x: string]: string
|
|
1582
|
+
[x: string]: string;
|
|
1497
1583
|
}>;
|
|
1498
1584
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1499
1585
|
getRefNameMapForAdapter(adapterConf: {
|
|
@@ -1502,7 +1588,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1502
1588
|
signal?: AbortSignal;
|
|
1503
1589
|
sessionId: string;
|
|
1504
1590
|
}): Promise<{
|
|
1505
|
-
[x: string]: string
|
|
1591
|
+
[x: string]: string;
|
|
1506
1592
|
} | undefined>;
|
|
1507
1593
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1508
1594
|
[x: string]: unknown;
|
|
@@ -1510,7 +1596,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1510
1596
|
signal?: AbortSignal;
|
|
1511
1597
|
sessionId: string;
|
|
1512
1598
|
}): Promise<{
|
|
1513
|
-
[x: string]: string
|
|
1599
|
+
[x: string]: string;
|
|
1514
1600
|
} | undefined>;
|
|
1515
1601
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
1516
1602
|
} & {
|
|
@@ -1543,7 +1629,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
|
|
|
1543
1629
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1544
1630
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1545
1631
|
[x: string]: any;
|
|
1546
|
-
} & import("mobx-state-tree/dist/internal"
|
|
1632
|
+
} & import("mobx-state-tree/dist/internal" /**
|
|
1633
|
+
* #action
|
|
1634
|
+
*/).NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1547
1635
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1548
1636
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
1549
1637
|
readonly adminMode: boolean;
|