@jbrowse/product-core 2.13.1 → 2.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +110 -84
  2. package/dist/RootModel/InternetAccounts.d.ts +1 -1
  3. package/dist/RootModel/InternetAccounts.js +1 -2
  4. package/dist/Session/BaseSession.d.ts +6 -2
  5. package/dist/Session/Connections.d.ts +71 -11
  6. package/dist/Session/Connections.js +3 -1
  7. package/dist/Session/DialogQueue.d.ts +1 -1
  8. package/dist/Session/MultipleViews.d.ts +354 -266
  9. package/dist/Session/ReferenceManagement.d.ts +1 -1
  10. package/dist/Session/ReferenceManagement.js +6 -2
  11. package/dist/Session/SessionTracks.d.ts +344 -258
  12. package/dist/Session/Tracks.d.ts +343 -255
  13. package/dist/Session/Tracks.js +3 -1
  14. package/dist/ui/AboutDialogContents.js +9 -3
  15. package/dist/ui/FileInfoPanel.d.ts +1 -1
  16. package/dist/ui/FileInfoPanel.js +1 -1
  17. package/dist/ui/RefNameInfoDialog.js +5 -3
  18. package/esm/RootModel/BaseRootModel.d.ts +110 -84
  19. package/esm/RootModel/InternetAccounts.d.ts +1 -1
  20. package/esm/RootModel/InternetAccounts.js +1 -2
  21. package/esm/Session/BaseSession.d.ts +6 -2
  22. package/esm/Session/Connections.d.ts +71 -11
  23. package/esm/Session/Connections.js +3 -1
  24. package/esm/Session/DialogQueue.d.ts +1 -1
  25. package/esm/Session/MultipleViews.d.ts +354 -266
  26. package/esm/Session/ReferenceManagement.d.ts +1 -1
  27. package/esm/Session/ReferenceManagement.js +6 -2
  28. package/esm/Session/SessionTracks.d.ts +344 -258
  29. package/esm/Session/Tracks.d.ts +343 -255
  30. package/esm/Session/Tracks.js +3 -1
  31. package/esm/ui/AboutDialogContents.js +9 -3
  32. package/esm/ui/FileInfoPanel.d.ts +1 -1
  33. package/esm/ui/FileInfoPanel.js +1 -1
  34. package/esm/ui/RefNameInfoDialog.js +5 -3
  35. package/package.json +6 -6
package/dist/RootModel/BaseRootModel.d.ts CHANGED
@@ -38,16 +38,16 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
38
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
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  }, {
40
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  error: unknown;
41
- loaded: boolean;
42
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  loadingP: Promise<void> | undefined;
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  refNameAliases: {
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- [x: string]: string | undefined;
46
- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
51
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  } & {
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  getConf(arg: string): any;
53
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  } & {
@@ -70,15 +70,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
72
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  } & {
73
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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+ regions: import("@jbrowse/core/util").Region[];
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+ refNameAliases: {
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+ [x: string]: string;
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+ };
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+ cytobands: import("@jbrowse/core/util").Feature[];
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+ }): void;
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  setError(e: unknown): void;
75
- setRegions(regions: import("@jbrowse/core/util" /**
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- * #action
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- */).Region[]): void;
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+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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84
  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -91,29 +93,29 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameMapForAdapter(adapterConf: {
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
94
- [x: string]: string | undefined;
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+ [x: string]: string;
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  }>;
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  getReverseRefNameMapForAdapter(adapterConf: {
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }>;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
102
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  }, {
103
- readonly assemblyNameMap: Record<string, ({
105
+ readonly assemblyNameMap: Record<string, {
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  configuration: any;
105
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  error: unknown;
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- loaded: boolean;
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  loadingP: Promise<void> | undefined;
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  refNameAliases: {
111
- [x: string]: string | undefined;
112
- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  } | undefined;
116
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ readonly lowerCaseRefNameAliases: {
117
+ [k: string]: string;
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+ } | undefined;
117
119
  } & {
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  getConf(arg: string): any;
119
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  } & {
@@ -136,13 +138,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
137
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  isValidRefName(refName: string): boolean;
138
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  } & {
139
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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+ regions: import("@jbrowse/core/util").Region[];
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+ refNameAliases: {
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+ [x: string]: string;
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+ };
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+ cytobands: import("@jbrowse/core/util").Feature[];
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+ }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
148
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  setLoadingP(p?: Promise<void>): void;
@@ -155,27 +161,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
155
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  getRefNameMapForAdapter(adapterConf: {
156
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  [x: string]: unknown;
157
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
158
- [x: string]: string | undefined;
164
+ [x: string]: string;
159
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  }>;
160
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  getReverseRefNameMapForAdapter(adapterConf: {
161
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
163
- [x: string]: string | undefined;
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+ [x: string]: string;
164
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  }>;
165
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
166
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
167
173
  }, {
168
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  error: unknown;
169
- loaded: boolean;
170
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  loadingP: Promise<void> | undefined;
171
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
172
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  refNameAliases: {
173
- [x: string]: string | undefined;
174
- } | undefined;
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- lowerCaseRefNameAliases: {
176
- [x: string]: string | undefined;
178
+ [x: string]: string;
177
179
  } | undefined;
178
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
181
+ } & {
182
+ readonly lowerCaseRefNameAliases: {
183
+ [k: string]: string;
184
+ } | undefined;
179
185
  } & {
180
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  getConf(arg: string): any;
181
187
  } & {
@@ -198,13 +204,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
198
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  getRefNameColor(refName: string): string | undefined;
199
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  isValidRefName(refName: string): boolean;
200
206
  } & {
201
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
207
+ setLoaded({ regions, refNameAliases, cytobands, }: {
208
+ regions: import("@jbrowse/core/util").Region[];
209
+ refNameAliases: {
210
+ [x: string]: string;
211
+ };
212
+ cytobands: import("@jbrowse/core/util").Feature[];
213
+ }): void;
202
214
  setError(e: unknown): void;
203
215
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
204
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  setRefNameAliases(aliases: {
205
- [x: string]: string | undefined;
206
- }, lcAliases: {
207
- [x: string]: string | undefined;
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+ [x: string]: string;
208
218
  }): void;
209
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
210
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  setLoadingP(p?: Promise<void>): void;
@@ -217,29 +227,29 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
217
227
  getRefNameMapForAdapter(adapterConf: {
218
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  [x: string]: unknown;
219
229
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
220
- [x: string]: string | undefined;
230
+ [x: string]: string;
221
231
  }>;
222
232
  getReverseRefNameMapForAdapter(adapterConf: {
223
233
  [x: string]: unknown;
224
234
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
225
- [x: string]: string | undefined;
235
+ [x: string]: string;
226
236
  }>;
227
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
237
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
228
238
  } & {
229
239
  get(asmName: string): ({
230
240
  configuration: any;
231
241
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
232
242
  error: unknown;
233
- loaded: boolean;
234
243
  loadingP: Promise<void> | undefined;
235
244
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
236
245
  refNameAliases: {
237
- [x: string]: string | undefined;
238
- } | undefined;
239
- lowerCaseRefNameAliases: {
240
- [x: string]: string | undefined;
246
+ [x: string]: string;
241
247
  } | undefined;
242
248
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
249
+ } & {
250
+ readonly lowerCaseRefNameAliases: {
251
+ [k: string]: string;
252
+ } | undefined;
243
253
  } & {
244
254
  getConf(arg: string): any;
245
255
  } & {
@@ -262,13 +272,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
262
272
  getRefNameColor(refName: string): string | undefined;
263
273
  isValidRefName(refName: string): boolean;
264
274
  } & {
265
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
275
+ setLoaded({ regions, refNameAliases, cytobands, }: {
276
+ regions: import("@jbrowse/core/util").Region[];
277
+ refNameAliases: {
278
+ [x: string]: string;
279
+ };
280
+ cytobands: import("@jbrowse/core/util").Feature[];
281
+ }): void;
266
282
  setError(e: unknown): void;
267
283
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
268
284
  setRefNameAliases(aliases: {
269
- [x: string]: string | undefined;
270
- }, lcAliases: {
271
- [x: string]: string | undefined;
285
+ [x: string]: string;
272
286
  }): void;
273
287
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
274
288
  setLoadingP(p?: Promise<void>): void;
@@ -281,27 +295,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
281
295
  getRefNameMapForAdapter(adapterConf: {
282
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  [x: string]: unknown;
283
297
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
284
- [x: string]: string | undefined;
298
+ [x: string]: string;
285
299
  }>;
286
300
  getReverseRefNameMapForAdapter(adapterConf: {
287
301
  [x: string]: unknown;
288
302
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
289
- [x: string]: string | undefined;
303
+ [x: string]: string;
290
304
  }>;
291
305
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
292
306
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
293
307
  }, {
294
308
  error: unknown;
295
- loaded: boolean;
296
309
  loadingP: Promise<void> | undefined;
297
310
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
298
311
  refNameAliases: {
299
- [x: string]: string | undefined;
300
- } | undefined;
301
- lowerCaseRefNameAliases: {
302
- [x: string]: string | undefined;
312
+ [x: string]: string;
303
313
  } | undefined;
304
314
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
315
+ } & {
316
+ readonly lowerCaseRefNameAliases: {
317
+ [k: string]: string;
318
+ } | undefined;
305
319
  } & {
306
320
  getConf(arg: string): any;
307
321
  } & {
@@ -324,13 +338,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
324
338
  getRefNameColor(refName: string): string | undefined;
325
339
  isValidRefName(refName: string): boolean;
326
340
  } & {
327
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
341
+ setLoaded({ regions, refNameAliases, cytobands, }: {
342
+ regions: import("@jbrowse/core/util").Region[];
343
+ refNameAliases: {
344
+ [x: string]: string;
345
+ };
346
+ cytobands: import("@jbrowse/core/util").Feature[];
347
+ }): void;
328
348
  setError(e: unknown): void;
329
349
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
330
350
  setRefNameAliases(aliases: {
331
- [x: string]: string | undefined;
332
- }, lcAliases: {
333
- [x: string]: string | undefined;
351
+ [x: string]: string;
334
352
  }): void;
335
353
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
336
354
  setLoadingP(p?: Promise<void>): void;
@@ -343,12 +361,12 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
343
361
  getRefNameMapForAdapter(adapterConf: {
344
362
  [x: string]: unknown;
345
363
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
346
- [x: string]: string | undefined;
364
+ [x: string]: string;
347
365
  }>;
348
366
  getReverseRefNameMapForAdapter(adapterConf: {
349
367
  [x: string]: unknown;
350
368
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
351
- [x: string]: string | undefined;
369
+ [x: string]: string;
352
370
  }>;
353
371
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
354
372
  readonly assemblyNamesList: any[];
@@ -359,16 +377,16 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
359
377
  configuration: any;
360
378
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
361
379
  error: unknown;
362
- loaded: boolean;
363
380
  loadingP: Promise<void> | undefined;
364
381
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
365
382
  refNameAliases: {
366
- [x: string]: string | undefined;
367
- } | undefined;
368
- lowerCaseRefNameAliases: {
369
- [x: string]: string | undefined;
383
+ [x: string]: string;
370
384
  } | undefined;
371
385
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
386
+ } & {
387
+ readonly lowerCaseRefNameAliases: {
388
+ [k: string]: string;
389
+ } | undefined;
372
390
  } & {
373
391
  getConf(arg: string): any;
374
392
  } & {
@@ -391,13 +409,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
391
409
  getRefNameColor(refName: string): string | undefined;
392
410
  isValidRefName(refName: string): boolean;
393
411
  } & {
394
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
412
+ setLoaded({ regions, refNameAliases, cytobands, }: {
413
+ regions: import("@jbrowse/core/util").Region[];
414
+ refNameAliases: {
415
+ [x: string]: string;
416
+ };
417
+ cytobands: import("@jbrowse/core/util").Feature[];
418
+ }): void;
395
419
  setError(e: unknown): void;
396
420
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
397
421
  setRefNameAliases(aliases: {
398
- [x: string]: string | undefined;
399
- }, lcAliases: {
400
- [x: string]: string | undefined;
422
+ [x: string]: string;
401
423
  }): void;
402
424
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
403
425
  setLoadingP(p?: Promise<void>): void;
@@ -410,27 +432,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
410
432
  getRefNameMapForAdapter(adapterConf: {
411
433
  [x: string]: unknown;
412
434
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
413
- [x: string]: string | undefined;
435
+ [x: string]: string;
414
436
  }>;
415
437
  getReverseRefNameMapForAdapter(adapterConf: {
416
438
  [x: string]: unknown;
417
439
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
418
- [x: string]: string | undefined;
440
+ [x: string]: string;
419
441
  }>;
420
442
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
421
443
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
422
444
  }, {
423
445
  error: unknown;
424
- loaded: boolean;
425
446
  loadingP: Promise<void> | undefined;
426
447
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
427
448
  refNameAliases: {
428
- [x: string]: string | undefined;
429
- } | undefined;
430
- lowerCaseRefNameAliases: {
431
- [x: string]: string | undefined;
449
+ [x: string]: string;
432
450
  } | undefined;
433
451
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
452
+ } & {
453
+ readonly lowerCaseRefNameAliases: {
454
+ [k: string]: string;
455
+ } | undefined;
434
456
  } & {
435
457
  getConf(arg: string): any;
436
458
  } & {
@@ -453,13 +475,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
453
475
  getRefNameColor(refName: string): string | undefined;
454
476
  isValidRefName(refName: string): boolean;
455
477
  } & {
456
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
478
+ setLoaded({ regions, refNameAliases, cytobands, }: {
479
+ regions: import("@jbrowse/core/util").Region[];
480
+ refNameAliases: {
481
+ [x: string]: string;
482
+ };
483
+ cytobands: import("@jbrowse/core/util").Feature[];
484
+ }): void;
457
485
  setError(e: unknown): void;
458
486
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
459
487
  setRefNameAliases(aliases: {
460
- [x: string]: string | undefined;
461
- }, lcAliases: {
462
- [x: string]: string | undefined;
488
+ [x: string]: string;
463
489
  }): void;
464
490
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
465
491
  setLoadingP(p?: Promise<void>): void;
@@ -472,12 +498,12 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
472
498
  getRefNameMapForAdapter(adapterConf: {
473
499
  [x: string]: unknown;
474
500
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
475
- [x: string]: string | undefined;
501
+ [x: string]: string;
476
502
  }>;
477
503
  getReverseRefNameMapForAdapter(adapterConf: {
478
504
  [x: string]: unknown;
479
505
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
480
- [x: string]: string | undefined;
506
+ [x: string]: string;
481
507
  }>;
482
508
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
483
509
  getRefNameMapForAdapter(adapterConf: {
@@ -486,7 +512,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
486
512
  signal?: AbortSignal;
487
513
  sessionId: string;
488
514
  }): Promise<{
489
- [x: string]: string | undefined;
515
+ [x: string]: string;
490
516
  } | undefined>;
491
517
  getReverseRefNameMapForAdapter(adapterConf: {
492
518
  [x: string]: unknown;
@@ -494,7 +520,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
494
520
  signal?: AbortSignal;
495
521
  sessionId: string;
496
522
  }): Promise<{
497
- [x: string]: string | undefined;
523
+ [x: string]: string;
498
524
  } | undefined>;
499
525
  isValidRefName(refName: string, assemblyName: string): boolean;
500
526
  } & {
package/dist/RootModel/InternetAccounts.d.ts CHANGED
@@ -19,7 +19,7 @@ export declare function InternetAccountsRootModelMixin(pluginManager: PluginMana
19
19
  /**
20
20
  * #action
21
21
  */
22
- createEphemeralInternetAccount(internetAccountId: string, initialSnapshot: {} | undefined, url: string): any;
22
+ createEphemeralInternetAccount(internetAccountId: string, initialSnapshot: Record<string, unknown>, url: string): any;
23
23
  /**
24
24
  * #action
25
25
  */
package/dist/RootModel/InternetAccounts.js CHANGED
@@ -34,7 +34,7 @@ function InternetAccountsRootModelMixin(pluginManager) {
34
34
  /**
35
35
  * #action
36
36
  */
37
- createEphemeralInternetAccount(internetAccountId, initialSnapshot = {}, url) {
37
+ createEphemeralInternetAccount(internetAccountId, initialSnapshot, url) {
38
38
  let hostUri;
39
39
  try {
40
40
  hostUri = new URL(url).origin;
@@ -42,7 +42,6 @@ function InternetAccountsRootModelMixin(pluginManager) {
42
42
  catch (e) {
43
43
  // ignore
44
44
  }
45
- // id of a custom new internaccount is `${type}-${name}`
46
45
  const internetAccountSplit = internetAccountId.split('-');
47
46
  const configuration = {
48
47
  type: internetAccountSplit[0],
package/dist/Session/BaseSession.d.ts CHANGED
@@ -82,8 +82,12 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
82
82
  refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
83
83
  adapter: import("mobx-state-tree").IAnyModelType;
84
84
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
85
- cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
86
- adapter: import("mobx-state-tree").IAnyModelType;
85
+ cytobands: import("@jbrowse/core/configuration/configurationSchema" /**
86
+ * #getter
87
+ */).ConfigurationSchemaType<{
88
+ adapter: import("mobx-state-tree" /**
89
+ * #getter
90
+ */).IAnyModelType;
87
91
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
88
92
  displayName: {
89
93
  type: string;
package/dist/Session/Connections.d.ts CHANGED
@@ -27,9 +27,29 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
27
27
  connect(_arg: AnyConfigurationModel): void;
28
28
  } & {
29
29
  afterAttach(): void;
30
- addTrackConf(trackConf: AnyConfigurationModel): any;
31
- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
32
- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
30
+ addTrackConf(trackConf: ({
31
+ [x: string]: any;
32
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
33
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
34
+ [x: string]: any;
35
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
36
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
37
+ [x: string]: any;
38
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
39
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
40
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
41
+ addTrackConfs(trackConfs: (({
42
+ [x: string]: any;
43
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
44
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
45
+ [x: string]: any;
46
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
47
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
48
+ [x: string]: any;
49
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
50
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
51
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
52
+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
33
53
  clear(): void;
34
54
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
35
55
  }, {
@@ -62,7 +82,7 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
62
82
  /**
63
83
  * #action
64
84
  */
65
- makeConnection(configuration: AnyConfigurationModel, initialSnapshot?: {}): {
85
+ makeConnection(configuration: AnyConfigurationModel, initialSnapshot?: {}): ({
66
86
  name: string;
67
87
  tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
68
88
  configuration: {
@@ -91,9 +111,29 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
91
111
  connect(_arg: AnyConfigurationModel): void;
92
112
  } & {
93
113
  afterAttach(): void;
94
- addTrackConf(trackConf: AnyConfigurationModel): any;
95
- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
96
- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
114
+ addTrackConf(trackConf: ({
115
+ [x: string]: any;
116
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
117
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
118
+ [x: string]: any;
119
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
120
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
121
+ [x: string]: any;
122
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
123
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
124
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
125
+ addTrackConfs(trackConfs: (({
126
+ [x: string]: any;
127
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
128
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
129
+ [x: string]: any;
130
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
131
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
132
+ [x: string]: any;
133
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
134
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
135
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
136
+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
97
137
  clear(): void;
98
138
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
99
139
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -114,11 +154,31 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
114
154
  connect(_arg: AnyConfigurationModel): void;
115
155
  } & {
116
156
  afterAttach(): void;
117
- addTrackConf(trackConf: AnyConfigurationModel): any;
118
- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
119
- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
157
+ addTrackConf(trackConf: ({
158
+ [x: string]: any;
159
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
160
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
161
+ [x: string]: any;
162
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
163
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
164
+ [x: string]: any;
165
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
166
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
167
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
168
+ addTrackConfs(trackConfs: (({
169
+ [x: string]: any;
170
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
171
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
172
+ [x: string]: any;
173
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
174
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
175
+ [x: string]: any;
176
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
177
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
178
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
179
+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
120
180
  clear(): void;
121
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
181
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
122
182
  /**
123
183
  * #action
124
184
  */
package/dist/Session/Connections.js CHANGED
@@ -67,7 +67,9 @@ function ConnectionManagementSessionMixin(pluginManager) {
67
67
  }
68
68
  return [
69
69
  () => {
70
- callbacksToDeref.forEach(cb => cb());
70
+ callbacksToDeref.forEach(cb => {
71
+ cb();
72
+ });
71
73
  this.breakConnection(configuration);
72
74
  },
73
75
  derefTypeCount,
package/dist/Session/DialogQueue.d.ts CHANGED
@@ -11,7 +11,7 @@ export declare function DialogQueueSessionMixin(_pluginManager: PluginManager):
11
11
  /**
12
12
  * #getter
13
13
  */
14
- readonly DialogComponent: DialogComponentType;
14
+ readonly DialogComponent: DialogComponentType | undefined;
15
15
  /**
16
16
  * #getter
17
17
  */