@jbrowse/product-core 2.12.0 → 2.12.1

package/dist/Session/Tracks.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isSessionWithTracks = exports.TracksManagerSessionMixin = void 0;
+exports.TracksManagerSessionMixin = TracksManagerSessionMixin;
+exports.isSessionWithTracks = isSessionWithTracks;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const BaseSession_1 = require("./BaseSession");
 const ReferenceManagement_1 = require("./ReferenceManagement");
@@ -43,9 +44,7 @@ function TracksManagerSessionMixin(pluginManager) {
         },
     }));
 }
-exports.TracksManagerSessionMixin = TracksManagerSessionMixin;
 /** Type guard for SessionWithTracks */
 function isSessionWithTracks(thing) {
     return (0, BaseSession_1.isBaseSession)(thing) && 'tracks' in thing;
 }
-exports.isSessionWithTracks = isSessionWithTracks;

package/dist/rpcWorker.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.initializeWorker = void 0;
+exports.initializeWorker = initializeWorker;
 const librpc_web_mod_1 = __importDefault(require("librpc-web-mod"));
 const PluginManager_1 = __importDefault(require("@jbrowse/core/PluginManager"));
 const remoteAbortSignals_1 = require("@jbrowse/core/rpc/remoteAbortSignals");
@@ -69,4 +69,3 @@ async function initializeWorker(corePlugins, opts) {
     }
     /* do nothing */
 }
-exports.initializeWorker = initializeWorker;

package/dist/ui/AboutDialog.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.AboutDialog = void 0;
+exports.AboutDialog = AboutDialog;
 const react_1 = __importDefault(require("react"));
 const Dialog_1 = __importDefault(require("@jbrowse/core/ui/Dialog"));
 const util_1 = require("@jbrowse/core/util");
@@ -17,4 +17,3 @@ function AboutDialog({ config, handleClose, }) {
     return (react_1.default.createElement(Dialog_1.default, { open: true, onClose: handleClose, title: trackName, maxWidth: "xl" },
         react_1.default.createElement(AboutComponent, { config: config })));
 }
-exports.AboutDialog = AboutDialog;

package/dist/ui/FileInfoPanel.js

@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = FileInfoPanel;
 const react_1 = __importStar(require("react"));
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
@@ -59,4 +60,3 @@ function FileInfoPanel({ config, }) {
         : info || {};
     return info !== null ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details })))) : null;
 }
-exports.default = FileInfoPanel;

package/esm/RootModel/BaseRootModel.d.ts

@@ -72,14 +72,16 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
         } & {
             setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
             setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+            setRegions(regions: import("@jbrowse/core/util" /**
+             * #action
+             */).Region[]): void;
             setRefNameAliases(aliases: {
                 [x: string]: string | undefined;
             }, lcAliases: {
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -143,7 +145,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -205,7 +207,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -269,7 +271,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -331,7 +333,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -350,11 +352,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             }>;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
         readonly assemblyNamesList: any[];
-        readonly assemblyList: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+        readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
         readonly rpcManager: RpcManager;
     } & {
         waitForAssembly(assemblyName: string): Promise<({
@@ -402,7 +400,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -464,7 +462,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
                 [x: string]: string | undefined;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
+            setLoadingP(p?: Promise<void>): void;
             load(): Promise<void>;
             loadPre(): Promise<void>;
         } & {
@@ -485,7 +483,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
         getRefNameMapForAdapter(adapterConf: {
             [x: string]: unknown;
         }, assemblyName: string | undefined, opts: {
-            signal?: AbortSignal | undefined;
+            signal?: AbortSignal;
             sessionId: string;
         }): Promise<{
             [x: string]: string | undefined;
@@ -493,7 +491,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
         getReverseRefNameMapForAdapter(adapterConf: {
             [x: string]: unknown;
         }, assemblyName: string | undefined, opts: {
-            signal?: AbortSignal | undefined;
+            signal?: AbortSignal;
             sessionId: string;
         }): Promise<{
             [x: string]: string | undefined;
@@ -501,135 +499,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
         isValidRefName(refName: string, assemblyName: string): boolean;
     } & {
         afterAttach(): void;
-        removeAssembly(asm: {
-            configuration: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            error: unknown;
-            loaded: boolean;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string | undefined;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined; /**
-             * #action
-             */
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
-            }>;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
-        }, {
-            error: unknown;
-            loaded: boolean;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string | undefined;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined; /**
-             * #action
-             */
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void> | undefined): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
-            }>;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+        removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
         addAssembly(configuration: any): void;
         replaceAssembly(idx: number, configuration: any): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;

package/esm/Session/BaseSession.d.ts

@@ -60,14 +60,20 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
     readonly assemblies: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         aliases: {
             type: string;
             defaultValue: never[];
             description: string;
         };
-        sequence: AnyConfigurationSchemaType;
+        sequence: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         refNameColors: {
             type: string;
             defaultValue: never[];
@@ -77,12 +83,8 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
             adapter: import("mobx-state-tree").IAnyModelType;
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType; /**
-             * #getter
-             */
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>; /**
-         * #getter
-         */
+            adapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         displayName: {
             type: string;
             defaultValue: string;

package/esm/Session/Connections.d.ts

@@ -18,36 +18,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
                 description: string;
             };
             assemblyNames: {
-                type: string; /**
-                 * #property
-                 */
+                type: string;
                 defaultValue: never[];
                 description: string;
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
-        connect(_arg: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+        connect(_arg: AnyConfigurationModel): void;
     } & {
         afterAttach(): void;
-        addTrackConf(trackConf: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
-        addTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
-        setTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
+        addTrackConf(trackConf: AnyConfigurationModel): any;
+        addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
+        setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
         clear(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 }, {
@@ -57,7 +39,13 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
     readonly connections: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         name: {
             type: string;
@@ -80,7 +68,13 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
         configuration: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             name: {
                 type: string;
@@ -88,36 +82,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
                 description: string;
             };
             assemblyNames: {
-                type: string; /**
-                 * #property
-                 */
+                type: string;
                 defaultValue: never[];
                 description: string;
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        connect(_arg: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+        connect(_arg: AnyConfigurationModel): void;
     } & {
         afterAttach(): void;
-        addTrackConf(trackConf: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
-        addTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
-        setTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
+        addTrackConf(trackConf: AnyConfigurationModel): any;
+        addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
+        setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
         clear(): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         name: import("mobx-state-tree").ISimpleType<string>;
@@ -129,36 +105,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
                 description: string;
             };
             assemblyNames: {
-                type: string; /**
-                 * #property
-                 */
+                type: string;
                 defaultValue: never[];
                 description: string;
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
-        connect(_arg: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+        connect(_arg: AnyConfigurationModel): void;
     } & {
         afterAttach(): void;
-        addTrackConf(trackConf: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
-        addTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
-        setTrackConfs(trackConfs: ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
+        addTrackConf(trackConf: AnyConfigurationModel): any;
+        addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
+        setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
         clear(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     /**