@jbrowse/product-core 2.11.2 → 2.12.1

package/esm/Session/MultipleViews.d.ts

@@ -18,9 +18,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
     activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
-    minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
-     * #action
-     */
+    minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
 } & {
     /**
      * #property
@@ -73,14 +71,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setCytobands(cytobands: import("@jbrowse/core/util" /**
+                 * #action
+                 */).Feature[]): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -135,14 +135,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -167,7 +167,9 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
                 error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly" /**
+                 * #action
+                 */).BasicRegion[] | undefined;
                 refNameAliases: {
                     [x: string]: string | undefined;
                 } | undefined;
@@ -199,14 +201,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -261,14 +263,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -325,14 +327,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -387,14 +389,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -413,11 +415,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
                 }>;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: any[];
-            readonly assemblyList: ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             waitForAssembly(assemblyName: string): Promise<({
@@ -458,14 +456,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -520,14 +518,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -548,7 +546,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -556,7 +554,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -564,131 +562,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             isValidRefName(refName: string, assemblyName: string): boolean;
         } & {
             afterAttach(): void;
-            removeAssembly(asm: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
             addAssembly(configuration: any): void;
             replaceAssembly(idx: number, configuration: any): void;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
@@ -730,14 +604,16 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setCytobands(cytobands: import("@jbrowse/core/util" /**
+                 * #action
+                 */).Feature[]): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -794,14 +670,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -856,14 +732,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -920,14 +796,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -982,14 +858,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1008,11 +884,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
                 }>;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: any[];
-            readonly assemblyList: ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             waitForAssembly(assemblyName: string): Promise<({
@@ -1053,14 +925,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1115,14 +987,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1143,7 +1015,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -1151,7 +1023,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -1159,131 +1031,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             isValidRefName(refName: string, assemblyName: string): boolean;
         } & {
             afterAttach(): void;
-            removeAssembly(asm: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
             addAssembly(configuration: any): void;
             replaceAssembly(idx: number, configuration: any): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
@@ -1295,7 +1043,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         pluginManager: PluginManager;
     } & {
         setError(error: unknown): void;
-        setSession(sessionSnapshot?: any): void;
+        setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
@@ -1342,14 +1090,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1406,14 +1154,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1468,14 +1216,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1532,14 +1280,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1594,14 +1342,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1620,11 +1368,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
                 }>;
             }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: any[];
-            readonly assemblyList: ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             waitForAssembly(assemblyName: string): Promise<({
@@ -1665,14 +1409,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1727,14 +1471,14 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
                 setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 setRefNameAliases(aliases: {
                     [x: string]: string | undefined;
                 }, lcAliases: {
                     [x: string]: string | undefined;
                 }): void;
                 setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
+                setLoadingP(p?: Promise<void>): void;
                 load(): Promise<void>;
                 loadPre(): Promise<void>;
             } & {
@@ -1755,7 +1499,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -1763,7 +1507,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal | undefined;
+                signal?: AbortSignal;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string | undefined;
@@ -1771,131 +1515,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             isValidRefName(refName: string, assemblyName: string): boolean;
         } & {
             afterAttach(): void;
-            removeAssembly(asm: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean;
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
             addAssembly(configuration: any): void;
             replaceAssembly(idx: number, configuration: any): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
@@ -1907,20 +1527,24 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         pluginManager: PluginManager;
     } & {
         setError(error: unknown): void;
-        setSession(sessionSnapshot?: any): void;
+        setSession(sessionSnapshot?: import("mobx-state-tree").SnapshotIn<import("mobx-state-tree").IAnyType>): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
-     * #action
-     */
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;
     readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
     readonly configuration: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
     readonly adminMode: boolean;
     readonly textSearchManager: import("@jbrowse/core/util").TextSearchManager;
@@ -1928,7 +1552,13 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     readonly assemblies: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         aliases: {
             type: string;
@@ -1961,9 +1591,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     readonly visibleWidget: any;
 } & {
     setDrawerPosition(arg: string): void;
-    /**
-     * #action
-     */
     updateDrawerWidth(drawerWidth: number): number;
     resizeDrawer(distance: number): number;
     addWidget(typeName: string, id: string, initialState?: {}, conf?: unknown): any;
@@ -1973,11 +1600,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     minimizeWidgetDrawer(): void;
     showWidgetDrawer(): void;
     hideAllWidgets(): void;
-    editConfiguration(configuration: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
     afterAttach(): void;
 } & {
     /**