@jbrowse/product-core 2.11.2 → 2.12.1

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Files changed (38) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +14 -144
  2. package/dist/RootModel/BaseRootModel.js +2 -3
  3. package/dist/RootModel/FormatAbout.js +1 -2
  4. package/dist/RootModel/FormatDetails.js +1 -2
  5. package/dist/RootModel/HierarchicalConfig.js +1 -2
  6. package/dist/RootModel/InternetAccounts.js +1 -2
  7. package/dist/Session/BaseSession.d.ts +10 -8
  8. package/dist/Session/BaseSession.js +3 -4
  9. package/dist/Session/Connections.d.ts +29 -71
  10. package/dist/Session/Connections.js +2 -3
  11. package/dist/Session/DialogQueue.js +2 -3
  12. package/dist/Session/DrawerWidgets.js +2 -3
  13. package/dist/Session/MultipleViews.d.ts +84 -461
  14. package/dist/Session/MultipleViews.js +2 -3
  15. package/dist/Session/ReferenceManagement.js +2 -3
  16. package/dist/Session/SessionTracks.d.ts +69 -525
  17. package/dist/Session/SessionTracks.js +2 -3
  18. package/dist/Session/Themes.js +2 -3
  19. package/dist/Session/Tracks.d.ts +62 -535
  20. package/dist/Session/Tracks.js +2 -3
  21. package/dist/rpcWorker.js +1 -2
  22. package/dist/ui/AboutDialog.js +1 -2
  23. package/dist/ui/AboutDialogContents.d.ts +3 -2
  24. package/dist/ui/AboutDialogContents.js +19 -10
  25. package/dist/ui/FileInfoPanel.js +1 -1
  26. package/dist/ui/RefNameInfoDialog.d.ts +7 -0
  27. package/dist/ui/RefNameInfoDialog.js +110 -0
  28. package/esm/RootModel/BaseRootModel.d.ts +14 -144
  29. package/esm/Session/BaseSession.d.ts +10 -8
  30. package/esm/Session/Connections.d.ts +29 -71
  31. package/esm/Session/MultipleViews.d.ts +84 -461
  32. package/esm/Session/SessionTracks.d.ts +69 -525
  33. package/esm/Session/Tracks.d.ts +62 -535
  34. package/esm/ui/AboutDialogContents.d.ts +3 -2
  35. package/esm/ui/AboutDialogContents.js +19 -9
  36. package/esm/ui/RefNameInfoDialog.d.ts +7 -0
  37. package/esm/ui/RefNameInfoDialog.js +82 -0
  38. package/package.json +3 -3
@@ -18,36 +18,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
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  description: string;
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  };
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  assemblyNames: {
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- type: string; /**
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- * #property
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- */
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+ type: string;
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  defaultValue: never[];
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  description: string;
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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  }, {
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- connect(_arg: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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+ connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
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- addTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
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- setTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: AnyConfigurationModel): any;
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+ addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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  clear(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }, {
@@ -57,7 +39,13 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
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  readonly connections: ({
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  [x: string]: any;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  name: {
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  type: string;
@@ -80,7 +68,13 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
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  configuration: {
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  [x: string]: any;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  name: {
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  type: string;
@@ -88,36 +82,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
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  description: string;
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  };
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  assemblyNames: {
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- type: string; /**
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- * #property
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- */
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+ type: string;
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  defaultValue: never[];
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  description: string;
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- connect(_arg: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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+ connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
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- addTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
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- setTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: AnyConfigurationModel): any;
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+ addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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  clear(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  name: import("mobx-state-tree").ISimpleType<string>;
@@ -129,36 +105,18 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
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  description: string;
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  };
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  assemblyNames: {
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- type: string; /**
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- * #property
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- */
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+ type: string;
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  defaultValue: never[];
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  description: string;
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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  }, {
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- connect(_arg: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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+ connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: {
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
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- addTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
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- setTrackConfs(trackConfs: ({
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- [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: AnyConfigurationModel): any;
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+ addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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  clear(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  /**