@jbrowse/plugin-wiggle 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (403) hide show
  1. package/esm/BigWigAdapter/BigWigAdapter.d.ts +14 -1
  2. package/esm/BigWigAdapter/BigWigAdapter.js +118 -22
  3. package/esm/BigWigAdapter/configSchema.d.ts +2 -2
  4. package/esm/BigWigAdapter/configSchema.js +1 -1
  5. package/esm/BigWigAdapter/index.js +2 -2
  6. package/esm/CreateMultiWiggleExtension/index.js +1 -1
  7. package/esm/DensityRenderer/DensityRenderer.d.ts +5 -6
  8. package/esm/DensityRenderer/DensityRenderer.js +6 -5
  9. package/esm/DensityRenderer/configSchema.d.ts +3 -3
  10. package/esm/DensityRenderer/configSchema.js +1 -1
  11. package/esm/DensityRenderer/index.js +11 -9
  12. package/esm/DensityRenderer/makeImageData.d.ts +3 -0
  13. package/esm/DensityRenderer/makeImageData.js +13 -0
  14. package/esm/DensityRenderer/renderDensity.d.ts +3 -0
  15. package/esm/DensityRenderer/renderDensity.js +18 -0
  16. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +5 -7
  17. package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -15
  18. package/esm/LinePlotRenderer/configSchema.d.ts +4 -4
  19. package/esm/LinePlotRenderer/configSchema.js +1 -1
  20. package/esm/LinePlotRenderer/index.js +4 -4
  21. package/esm/LinePlotRenderer/makeImageData.d.ts +3 -0
  22. package/esm/LinePlotRenderer/makeImageData.js +13 -0
  23. package/esm/LinePlotRenderer/renderLinePlot.d.ts +3 -0
  24. package/esm/LinePlotRenderer/renderLinePlot.js +23 -0
  25. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  26. package/esm/LinearWiggleDisplay/components/Tooltip.js +10 -6
  27. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  28. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  29. package/esm/LinearWiggleDisplay/configSchema.d.ts +9 -9
  30. package/esm/LinearWiggleDisplay/configSchema.js +2 -2
  31. package/esm/LinearWiggleDisplay/index.d.ts +3 -3
  32. package/esm/LinearWiggleDisplay/index.js +6 -6
  33. package/esm/LinearWiggleDisplay/model.d.ts +1128 -105
  34. package/esm/LinearWiggleDisplay/model.js +58 -18
  35. package/esm/LinearWiggleDisplay/renderSvg.d.ts +1 -1
  36. package/esm/LinearWiggleDisplay/renderSvg.js +3 -2
  37. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +5 -7
  38. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +6 -24
  39. package/esm/MultiDensityRenderer/configSchema.d.ts +3 -3
  40. package/esm/MultiDensityRenderer/configSchema.js +1 -1
  41. package/esm/MultiDensityRenderer/index.js +4 -4
  42. package/esm/MultiDensityRenderer/makeImageData.d.ts +3 -0
  43. package/esm/MultiDensityRenderer/makeImageData.js +7 -0
  44. package/esm/MultiDensityRenderer/renderMultiDensity.d.ts +3 -0
  45. package/esm/MultiDensityRenderer/renderMultiDensity.js +37 -0
  46. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +5 -7
  47. package/esm/MultiLineRenderer/MultiLineRenderer.js +6 -17
  48. package/esm/MultiLineRenderer/configSchema.d.ts +5 -5
  49. package/esm/MultiLineRenderer/configSchema.js +2 -2
  50. package/esm/MultiLineRenderer/index.js +4 -4
  51. package/esm/MultiLineRenderer/makeImageData.d.ts +3 -0
  52. package/esm/MultiLineRenderer/makeImageData.js +7 -0
  53. package/esm/MultiLineRenderer/renderMultiLine.d.ts +3 -0
  54. package/esm/MultiLineRenderer/renderMultiLine.js +34 -0
  55. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +2 -2
  56. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +11 -6
  57. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +1 -1
  58. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +4 -4
  59. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +1 -1
  60. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +5 -5
  61. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +3 -3
  62. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +1 -1
  63. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +6 -4
  64. package/esm/MultiLinearWiggleDisplay/components/LegendItemText.js +2 -2
  65. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -1
  66. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +4 -3
  67. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -2
  68. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -3
  69. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
  70. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -2
  71. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
  72. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +2 -2
  73. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -4
  74. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -9
  75. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +1 -1
  76. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +3 -3
  77. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +1 -1
  78. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +4 -5
  79. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +1 -1
  80. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +12 -17
  81. package/esm/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +1 -1
  82. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
  83. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  84. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -2
  85. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +5 -16
  86. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.d.ts +7 -0
  87. package/esm/MultiLinearWiggleDisplay/components/YScaleBarsWrapper.js +15 -0
  88. package/esm/MultiLinearWiggleDisplay/components/types.d.ts +10 -0
  89. package/esm/MultiLinearWiggleDisplay/components/types.js +1 -0
  90. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +4 -4
  91. package/esm/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +1 -1
  92. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  93. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +9 -9
  94. package/esm/MultiLinearWiggleDisplay/configSchema.js +2 -2
  95. package/esm/MultiLinearWiggleDisplay/index.js +3 -3
  96. package/esm/MultiLinearWiggleDisplay/model.d.ts +3624 -106
  97. package/esm/MultiLinearWiggleDisplay/model.js +78 -48
  98. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +1 -1
  99. package/esm/MultiLinearWiggleDisplay/renderSvg.js +3 -2
  100. package/esm/MultiQuantitativeTrack/configSchema.d.ts +16 -11
  101. package/esm/MultiQuantitativeTrack/index.js +13 -2
  102. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +5 -7
  103. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +6 -29
  104. package/esm/MultiRowLineRenderer/configSchema.d.ts +5 -5
  105. package/esm/MultiRowLineRenderer/configSchema.js +2 -2
  106. package/esm/MultiRowLineRenderer/index.js +4 -4
  107. package/esm/MultiRowLineRenderer/makeImageData.d.ts +3 -0
  108. package/esm/MultiRowLineRenderer/makeImageData.js +7 -0
  109. package/esm/MultiRowLineRenderer/renderMultiRowLine.d.ts +3 -0
  110. package/esm/MultiRowLineRenderer/renderMultiRowLine.js +44 -0
  111. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +5 -7
  112. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +6 -29
  113. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +5 -5
  114. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -2
  115. package/esm/MultiRowXYPlotRenderer/index.js +4 -4
  116. package/esm/MultiRowXYPlotRenderer/makeImageData.d.ts +3 -0
  117. package/esm/MultiRowXYPlotRenderer/makeImageData.js +7 -0
  118. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.d.ts +3 -0
  119. package/esm/MultiRowXYPlotRenderer/renderMultiRowXYPlot.js +42 -0
  120. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +5 -0
  121. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +48 -18
  122. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -2
  123. package/esm/MultiWiggleAdapter/index.js +2 -2
  124. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
  125. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +3 -4
  126. package/esm/MultiWiggleAddTrackWorkflow/index.js +2 -2
  127. package/esm/MultiWiggleRendering.d.ts +7 -7
  128. package/esm/MultiWiggleRendering.js +9 -7
  129. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +5 -7
  130. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +6 -20
  131. package/esm/MultiXYPlotRenderer/configSchema.d.ts +5 -5
  132. package/esm/MultiXYPlotRenderer/configSchema.js +2 -2
  133. package/esm/MultiXYPlotRenderer/index.js +4 -4
  134. package/esm/MultiXYPlotRenderer/makeImageData.d.ts +3 -0
  135. package/esm/MultiXYPlotRenderer/makeImageData.js +7 -0
  136. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.d.ts +3 -0
  137. package/esm/MultiXYPlotRenderer/renderMultiXYPlot.js +35 -0
  138. package/esm/QuantitativeTrack/configSchema.d.ts +16 -11
  139. package/esm/QuantitativeTrack/index.js +13 -2
  140. package/esm/SVGErrorBox.d.ts +5 -0
  141. package/esm/SVGErrorBox.js +4 -0
  142. package/esm/Tooltip.d.ts +1 -3
  143. package/esm/Tooltip.js +7 -7
  144. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +2 -10
  145. package/esm/WiggleRPC/MultiWiggleClusterScoreMatrix.js +3 -15
  146. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +1 -1
  147. package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js +2 -5
  148. package/esm/WiggleRPC/MultiWiggleGetSources.js +1 -4
  149. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +1 -4
  150. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +10 -0
  151. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +26 -5
  152. package/esm/WiggleRPC/executeClusterScoreMatrix.d.ts +6 -0
  153. package/esm/WiggleRPC/executeClusterScoreMatrix.js +15 -0
  154. package/esm/WiggleRPC/getScoreMatrix.d.ts +1 -1
  155. package/esm/WiggleRPC/getScoreMatrix.js +9 -6
  156. package/esm/WiggleRPC/rpcMethods.d.ts +5 -5
  157. package/esm/WiggleRPC/rpcMethods.js +5 -5
  158. package/esm/WiggleRPC/types.d.ts +1 -1
  159. package/esm/WiggleRendering.d.ts +2 -3
  160. package/esm/WiggleRendering.js +16 -3
  161. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +5 -6
  162. package/esm/XYPlotRenderer/XYPlotRenderer.js +6 -20
  163. package/esm/XYPlotRenderer/configSchema.d.ts +5 -5
  164. package/esm/XYPlotRenderer/configSchema.js +2 -2
  165. package/esm/XYPlotRenderer/index.d.ts +3 -3
  166. package/esm/XYPlotRenderer/index.js +14 -12
  167. package/esm/XYPlotRenderer/makeImageData.d.ts +3 -0
  168. package/esm/XYPlotRenderer/makeImageData.js +13 -0
  169. package/esm/XYPlotRenderer/renderXYPlot.d.ts +3 -0
  170. package/esm/XYPlotRenderer/renderXYPlot.js +23 -0
  171. package/esm/configSchema.d.ts +3 -3
  172. package/esm/configSchema.js +1 -1
  173. package/esm/drawDensity.d.ts +4 -2
  174. package/esm/drawDensity.js +25 -15
  175. package/esm/drawLine.d.ts +5 -3
  176. package/esm/drawLine.js +118 -41
  177. package/esm/drawXY.d.ts +4 -2
  178. package/esm/drawXY.js +75 -36
  179. package/esm/getMultiWiggleSourcesAutorun.d.ts +3 -2
  180. package/esm/getMultiWiggleSourcesAutorun.js +7 -2
  181. package/esm/getQuantitativeStats.d.ts +4 -2
  182. package/esm/getQuantitativeStats.js +18 -7
  183. package/esm/getQuantitativeStatsAutorun.d.ts +3 -2
  184. package/esm/getQuantitativeStatsAutorun.js +3 -3
  185. package/esm/index.d.ts +15 -19
  186. package/esm/index.js +31 -37
  187. package/esm/multiRendererHelper.d.ts +7 -0
  188. package/esm/multiRendererHelper.js +12 -0
  189. package/esm/saveTrackFormats/bedGraph.d.ts +4 -0
  190. package/esm/saveTrackFormats/bedGraph.js +11 -0
  191. package/esm/shared/SharedWiggleConfigSchema.d.ts +5 -5
  192. package/esm/shared/SharedWiggleConfigSchema.js +1 -1
  193. package/esm/shared/SharedWiggleMixin.d.ts +1081 -133
  194. package/esm/shared/SharedWiggleMixin.js +48 -26
  195. package/esm/shared/YScaleBar.d.ts +1 -1
  196. package/esm/shared/YScaleBar.js +16 -4
  197. package/esm/shared/axisPropsFromTickScale.d.ts +7 -0
  198. package/esm/shared/axisPropsFromTickScale.js +12 -0
  199. package/esm/svgExportUtil.d.ts +9 -0
  200. package/esm/svgExportUtil.js +6 -0
  201. package/esm/types.d.ts +24 -0
  202. package/esm/types.js +1 -0
  203. package/esm/util.d.ts +34 -1
  204. package/esm/util.js +60 -1
  205. package/package.json +35 -38
  206. package/dist/BigWigAdapter/BigWigAdapter.d.ts +0 -25
  207. package/dist/BigWigAdapter/BigWigAdapter.js +0 -81
  208. package/dist/BigWigAdapter/configSchema.d.ts +0 -20
  209. package/dist/BigWigAdapter/configSchema.js +0 -37
  210. package/dist/BigWigAdapter/index.d.ts +0 -2
  211. package/dist/BigWigAdapter/index.js +0 -54
  212. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -8
  213. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -26
  214. package/dist/CreateMultiWiggleExtension/index.d.ts +0 -2
  215. package/dist/CreateMultiWiggleExtension/index.js +0 -95
  216. package/dist/DensityRenderer/DensityRenderer.d.ts +0 -7
  217. package/dist/DensityRenderer/DensityRenderer.js +0 -46
  218. package/dist/DensityRenderer/configSchema.d.ts +0 -37
  219. package/dist/DensityRenderer/configSchema.js +0 -13
  220. package/dist/DensityRenderer/index.d.ts +0 -2
  221. package/dist/DensityRenderer/index.js +0 -17
  222. package/dist/GuessAdapter/index.d.ts +0 -2
  223. package/dist/GuessAdapter/index.js +0 -25
  224. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +0 -8
  225. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -56
  226. package/dist/LinePlotRenderer/configSchema.d.ts +0 -43
  227. package/dist/LinePlotRenderer/configSchema.js +0 -19
  228. package/dist/LinePlotRenderer/index.d.ts +0 -2
  229. package/dist/LinePlotRenderer/index.js +0 -17
  230. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -12
  231. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -31
  232. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +0 -15
  233. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -32
  234. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  235. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -28
  236. package/dist/LinearWiggleDisplay/configSchema.d.ts +0 -78
  237. package/dist/LinearWiggleDisplay/configSchema.js +0 -29
  238. package/dist/LinearWiggleDisplay/index.d.ts +0 -5
  239. package/dist/LinearWiggleDisplay/index.js +0 -65
  240. package/dist/LinearWiggleDisplay/model.d.ts +0 -434
  241. package/dist/LinearWiggleDisplay/model.js +0 -262
  242. package/dist/LinearWiggleDisplay/renderSvg.d.ts +0 -3
  243. package/dist/LinearWiggleDisplay/renderSvg.js +0 -16
  244. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +0 -8
  245. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +0 -65
  246. package/dist/MultiDensityRenderer/configSchema.d.ts +0 -37
  247. package/dist/MultiDensityRenderer/configSchema.js +0 -13
  248. package/dist/MultiDensityRenderer/index.d.ts +0 -2
  249. package/dist/MultiDensityRenderer/index.js +0 -17
  250. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +0 -8
  251. package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -58
  252. package/dist/MultiLineRenderer/configSchema.d.ts +0 -49
  253. package/dist/MultiLineRenderer/configSchema.js +0 -26
  254. package/dist/MultiLineRenderer/index.d.ts +0 -2
  255. package/dist/MultiLineRenderer/index.js +0 -17
  256. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +0 -7
  257. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -19
  258. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +0 -7
  259. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +0 -17
  260. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +0 -7
  261. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +0 -15
  262. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +0 -11
  263. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +0 -17
  264. package/dist/MultiLinearWiggleDisplay/components/LegendItemText.d.ts +0 -10
  265. package/dist/MultiLinearWiggleDisplay/components/LegendItemText.js +0 -13
  266. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +0 -8
  267. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +0 -9
  268. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +0 -5
  269. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +0 -19
  270. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -9
  271. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -12
  272. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +0 -7
  273. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +0 -130
  274. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +0 -18
  275. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -39
  276. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.d.ts +0 -6
  277. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialog.js +0 -29
  278. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.d.ts +0 -7
  279. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogAuto.js +0 -87
  280. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.d.ts +0 -7
  281. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/WiggleClusterDialogManual.js +0 -153
  282. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.d.ts +0 -8
  283. package/dist/MultiLinearWiggleDisplay/components/WiggleClusterDialog/types.js +0 -2
  284. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  285. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -14
  286. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +0 -7
  287. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +0 -28
  288. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialog.d.ts +0 -31
  289. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialog.js +0 -51
  290. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
  291. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogBulkEditPanel.js +0 -84
  292. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
  293. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogHelpfulTips.js +0 -7
  294. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
  295. package/dist/MultiLinearWiggleDisplay/components/ui/SetColorDialogRowPalettizer.js +0 -42
  296. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +0 -9
  297. package/dist/MultiLinearWiggleDisplay/components/util.js +0 -45
  298. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +0 -84
  299. package/dist/MultiLinearWiggleDisplay/configSchema.js +0 -44
  300. package/dist/MultiLinearWiggleDisplay/index.d.ts +0 -2
  301. package/dist/MultiLinearWiggleDisplay/index.js +0 -57
  302. package/dist/MultiLinearWiggleDisplay/model.d.ts +0 -453
  303. package/dist/MultiLinearWiggleDisplay/model.js +0 -413
  304. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +0 -3
  305. package/dist/MultiLinearWiggleDisplay/renderSvg.js +0 -15
  306. package/dist/MultiLinearWiggleDisplay/types.d.ts +0 -15
  307. package/dist/MultiLinearWiggleDisplay/types.js +0 -2
  308. package/dist/MultiLinearWiggleDisplay/util.d.ts +0 -0
  309. package/dist/MultiLinearWiggleDisplay/util.js +0 -1
  310. package/dist/MultiQuantitativeTrack/configSchema.d.ts +0 -80
  311. package/dist/MultiQuantitativeTrack/configSchema.js +0 -11
  312. package/dist/MultiQuantitativeTrack/index.d.ts +0 -2
  313. package/dist/MultiQuantitativeTrack/index.js +0 -20
  314. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +0 -8
  315. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +0 -70
  316. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -49
  317. package/dist/MultiRowLineRenderer/configSchema.js +0 -26
  318. package/dist/MultiRowLineRenderer/index.d.ts +0 -2
  319. package/dist/MultiRowLineRenderer/index.js +0 -17
  320. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +0 -8
  321. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +0 -70
  322. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -57
  323. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -34
  324. package/dist/MultiRowXYPlotRenderer/index.d.ts +0 -2
  325. package/dist/MultiRowXYPlotRenderer/index.js +0 -17
  326. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +0 -31
  327. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -110
  328. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -13
  329. package/dist/MultiWiggleAdapter/configSchema.js +0 -17
  330. package/dist/MultiWiggleAdapter/index.d.ts +0 -2
  331. package/dist/MultiWiggleAdapter/index.js +0 -57
  332. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +0 -5
  333. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +0 -89
  334. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +0 -2
  335. package/dist/MultiWiggleAddTrackWorkflow/index.js +0 -46
  336. package/dist/MultiWiggleRendering.d.ts +0 -19
  337. package/dist/MultiWiggleRendering.js +0 -81
  338. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +0 -8
  339. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -61
  340. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -57
  341. package/dist/MultiXYPlotRenderer/configSchema.js +0 -34
  342. package/dist/MultiXYPlotRenderer/index.d.ts +0 -2
  343. package/dist/MultiXYPlotRenderer/index.js +0 -17
  344. package/dist/QuantitativeTrack/configSchema.d.ts +0 -80
  345. package/dist/QuantitativeTrack/configSchema.js +0 -11
  346. package/dist/QuantitativeTrack/index.d.ts +0 -2
  347. package/dist/QuantitativeTrack/index.js +0 -20
  348. package/dist/Tooltip.d.ts +0 -18
  349. package/dist/Tooltip.js +0 -34
  350. package/dist/WiggleBaseRenderer.d.ts +0 -57
  351. package/dist/WiggleBaseRenderer.js +0 -42
  352. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.d.ts +0 -14
  353. package/dist/WiggleRPC/MultiWiggleClusterScoreMatrix.js +0 -31
  354. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.d.ts +0 -6
  355. package/dist/WiggleRPC/MultiWiggleGetScoreMatrix.js +0 -22
  356. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +0 -14
  357. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -22
  358. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +0 -12
  359. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -22
  360. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +0 -13
  361. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -22
  362. package/dist/WiggleRPC/getScoreMatrix.d.ts +0 -6
  363. package/dist/WiggleRPC/getScoreMatrix.js +0 -35
  364. package/dist/WiggleRPC/rpcMethods.d.ts +0 -5
  365. package/dist/WiggleRPC/rpcMethods.js +0 -21
  366. package/dist/WiggleRPC/types.d.ts +0 -13
  367. package/dist/WiggleRPC/types.js +0 -2
  368. package/dist/WiggleRendering.d.ts +0 -14
  369. package/dist/WiggleRendering.js +0 -35
  370. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +0 -7
  371. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -61
  372. package/dist/XYPlotRenderer/configSchema.d.ts +0 -57
  373. package/dist/XYPlotRenderer/configSchema.js +0 -34
  374. package/dist/XYPlotRenderer/index.d.ts +0 -5
  375. package/dist/XYPlotRenderer/index.js +0 -24
  376. package/dist/configSchema.d.ts +0 -37
  377. package/dist/configSchema.js +0 -47
  378. package/dist/drawDensity.d.ts +0 -18
  379. package/dist/drawDensity.js +0 -81
  380. package/dist/drawLine.d.ts +0 -20
  381. package/dist/drawLine.js +0 -77
  382. package/dist/drawXY.d.ts +0 -21
  383. package/dist/drawXY.js +0 -191
  384. package/dist/getMultiWiggleSourcesAutorun.d.ts +0 -18
  385. package/dist/getMultiWiggleSourcesAutorun.js +0 -38
  386. package/dist/getQuantitativeStats.d.ts +0 -13
  387. package/dist/getQuantitativeStats.js +0 -70
  388. package/dist/getQuantitativeStatsAutorun.d.ts +0 -13
  389. package/dist/getQuantitativeStatsAutorun.js +0 -35
  390. package/dist/index.d.ts +0 -91
  391. package/dist/index.js +0 -112
  392. package/dist/shared/SetMinMaxDialog.d.ts +0 -10
  393. package/dist/shared/SetMinMaxDialog.js +0 -26
  394. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -66
  395. package/dist/shared/SharedWiggleConfigSchema.js +0 -56
  396. package/dist/shared/SharedWiggleMixin.d.ts +0 -420
  397. package/dist/shared/SharedWiggleMixin.js +0 -343
  398. package/dist/shared/YScaleBar.d.ts +0 -9
  399. package/dist/shared/YScaleBar.js +0 -12
  400. package/dist/util.d.ts +0 -25
  401. package/dist/util.js +0 -105
  402. package/esm/WiggleBaseRenderer.d.ts +0 -57
  403. package/esm/WiggleBaseRenderer.js +0 -36
@@ -1,44 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.default = WiggleConfigFactory;
7
- const configuration_1 = require("@jbrowse/core/configuration");
8
- const mobx_state_tree_1 = require("mobx-state-tree");
9
- const SharedWiggleConfigSchema_1 = __importDefault(require("../shared/SharedWiggleConfigSchema"));
10
- function x() { }
11
- function WiggleConfigFactory(pluginManager) {
12
- const MultiXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiXYPlotRenderer').configSchema;
13
- const MultiDensityRendererConfigSchema = pluginManager.getRendererType('MultiDensityRenderer').configSchema;
14
- const MultiRowXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiRowXYPlotRenderer').configSchema;
15
- const MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
16
- const MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
17
- return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
18
- defaultRendering: {
19
- type: 'stringEnum',
20
- model: mobx_state_tree_1.types.enumeration('Rendering', [
21
- 'multirowxy',
22
- 'xyplot',
23
- 'multirowdensity',
24
- 'multiline',
25
- 'multirowline',
26
- ]),
27
- defaultValue: 'multirowxy',
28
- },
29
- renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
30
- MultiXYPlotRenderer: MultiXYPlotRendererConfigSchema,
31
- MultiDensityRenderer: MultiDensityRendererConfigSchema,
32
- MultiRowXYPlotRenderer: MultiRowXYPlotRendererConfigSchema,
33
- MultiLineRenderer: MultiLineRendererConfigSchema,
34
- MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
35
- }),
36
- height: {
37
- type: 'number',
38
- defaultValue: 200,
39
- },
40
- }, {
41
- baseConfiguration: (0, SharedWiggleConfigSchema_1.default)(),
42
- explicitlyTyped: true,
43
- });
44
- }
@@ -1,2 +0,0 @@
1
- import type PluginManager from '@jbrowse/core/PluginManager';
2
- export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
@@ -1,57 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
27
- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
30
- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
- __setModuleDefault(result, mod);
32
- return result;
33
- };
34
- })();
35
- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
38
- Object.defineProperty(exports, "__esModule", { value: true });
39
- exports.default = MultiLinearWiggleDisplayF;
40
- const react_1 = require("react");
41
- const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
42
- const configSchema_1 = __importDefault(require("./configSchema"));
43
- const model_1 = __importDefault(require("./model"));
44
- function MultiLinearWiggleDisplayF(pluginManager) {
45
- pluginManager.addDisplayType(() => {
46
- const configSchema = (0, configSchema_1.default)(pluginManager);
47
- return new DisplayType_1.default({
48
- name: 'MultiLinearWiggleDisplay',
49
- displayName: 'Multi-wiggle display',
50
- configSchema,
51
- stateModel: (0, model_1.default)(pluginManager, configSchema),
52
- trackType: 'MultiQuantitativeTrack',
53
- viewType: 'LinearGenomeView',
54
- ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
55
- });
56
- });
57
- }
@@ -1,453 +0,0 @@
1
- import type { Source } from '../util';
2
- import type PluginManager from '@jbrowse/core/PluginManager';
3
- import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
4
- import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
5
- import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
6
- import type { Instance } from 'mobx-state-tree';
7
- export declare function stateModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
8
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
- type: import("mobx-state-tree").ISimpleType<string>;
10
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
11
- } & {
12
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
13
- } & {
14
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
15
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
16
- } & {
17
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
18
- key: import("mobx-state-tree").ISimpleType<string>;
19
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
20
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
21
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
22
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
- }, {
24
- stopToken: string | undefined;
25
- filled: boolean;
26
- reactElement: React.ReactElement | undefined;
27
- features: Map<string, Feature> | undefined;
28
- layout: any;
29
- status: string;
30
- error: unknown;
31
- message: string | undefined;
32
- maxHeightReached: boolean;
33
- ReactComponent: ({ model, }: {
34
- model: {
35
- error?: unknown;
36
- reload: () => void;
37
- message: React.ReactNode;
38
- filled?: boolean;
39
- status?: string;
40
- reactElement?: React.ReactElement;
41
- };
42
- }) => import("react/jsx-runtime").JSX.Element | undefined;
43
- renderProps: any;
44
- } & {
45
- doReload(): void;
46
- afterAttach(): void;
47
- setStatus(message: string): void;
48
- setLoading(newStopToken: string): void;
49
- setMessage(messageText: string): void;
50
- setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
51
- setError(error: unknown): void;
52
- reload(): void;
53
- beforeDestroy(): void;
54
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
55
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
56
- maxFeatureScreenDensity: {
57
- type: string;
58
- description: string;
59
- defaultValue: number;
60
- };
61
- fetchSizeLimit: {
62
- type: string;
63
- defaultValue: number;
64
- description: string;
65
- };
66
- height: {
67
- type: string;
68
- defaultValue: number;
69
- description: string;
70
- };
71
- mouseover: {
72
- type: string;
73
- description: string;
74
- defaultValue: string;
75
- contextVariable: string[];
76
- };
77
- jexlFilters: {
78
- type: string;
79
- description: string;
80
- defaultValue: never[];
81
- };
82
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
83
- } & {
84
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
85
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
86
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
87
- minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
88
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
89
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
90
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
91
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
92
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
93
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
96
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
97
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
98
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
99
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
100
- configuration: AnyConfigurationSchemaType;
101
- } & {
102
- type: import("mobx-state-tree").ISimpleType<"MultiLinearWiggleDisplay">;
103
- layout: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
104
- showSidebar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
105
- }, {
106
- rendererTypeName: string;
107
- error: unknown;
108
- message: string | undefined;
109
- } & {
110
- readonly RenderingComponent: React.FC<{
111
- model: {
112
- id: string;
113
- type: string;
114
- rpcDriverName: string | undefined;
115
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
116
- rendererTypeName: string;
117
- error: unknown;
118
- message: string | undefined;
119
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
120
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
121
- type: import("mobx-state-tree").ISimpleType<string>;
122
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
123
- }, {
124
- rendererTypeName: string;
125
- error: unknown;
126
- message: string | undefined;
127
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
128
- onHorizontalScroll?: () => void;
129
- blockState?: Record<string, any>;
130
- }>;
131
- readonly DisplayBlurb: React.FC<{
132
- model: {
133
- id: string;
134
- type: string;
135
- rpcDriverName: string | undefined;
136
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
137
- rendererTypeName: string;
138
- error: unknown;
139
- message: string | undefined;
140
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
141
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
142
- type: import("mobx-state-tree").ISimpleType<string>;
143
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
144
- }, {
145
- rendererTypeName: string;
146
- error: unknown;
147
- message: string | undefined;
148
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
149
- }> | null;
150
- readonly adapterConfig: any;
151
- readonly parentTrack: any;
152
- renderProps(): any;
153
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
154
- readonly DisplayMessageComponent: undefined | React.FC<any>;
155
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
156
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
157
- regionCannotBeRendered(): null;
158
- } & {
159
- setMessage(arg?: string): void;
160
- setError(error?: unknown): void;
161
- setRpcDriverName(rpcDriverName: string): void;
162
- reload(): void;
163
- } & {
164
- scrollTop: number;
165
- } & {
166
- readonly height: number;
167
- } & {
168
- setScrollTop(scrollTop: number): void;
169
- setHeight(displayHeight: number): number;
170
- resizeHeight(distance: number): number;
171
- } & {
172
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
173
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
174
- currStatsBpPerPx: number;
175
- } & {
176
- readonly currentBytesRequested: number;
177
- readonly currentFeatureScreenDensity: number;
178
- readonly maxFeatureScreenDensity: any;
179
- readonly featureDensityStatsReady: boolean;
180
- readonly maxAllowableBytes: number;
181
- } & {
182
- afterAttach(): void;
183
- } & {
184
- setCurrStatsBpPerPx(n: number): void;
185
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
186
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
187
- setFeatureDensityStatsP(arg: any): void;
188
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
189
- clearFeatureDensityStats(): void;
190
- } & {
191
- readonly regionTooLarge: boolean;
192
- readonly regionTooLargeReason: string;
193
- } & {
194
- readonly statsReadyAndRegionNotTooLarge: boolean;
195
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
196
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
197
- } & {
198
- mouseoverExtraInformation: string | undefined;
199
- featureIdUnderMouse: undefined | string;
200
- contextMenuFeature: undefined | Feature;
201
- } & {
202
- readonly DisplayMessageComponent: undefined | React.FC<any>;
203
- readonly blockType: "staticBlocks" | "dynamicBlocks";
204
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
205
- } & {
206
- readonly renderDelay: number;
207
- readonly TooltipComponent: AnyReactComponentType;
208
- readonly selectedFeatureId: string | undefined;
209
- copyInfoToClipboard(feature: Feature): void;
210
- } & {
211
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
212
- readonly featureUnderMouse: Feature | undefined;
213
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
214
- label?: string;
215
- description?: string;
216
- refName: string;
217
- }]>;
218
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
219
- getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
220
- label?: string;
221
- description?: string;
222
- refName: string;
223
- }]) | undefined;
224
- searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
225
- label?: string;
226
- description?: string;
227
- refName: string;
228
- }]) | undefined;
229
- } & {
230
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
231
- deleteBlock(key: string): void;
232
- selectFeature(feature: Feature): void;
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- navToFeature(feature: Feature): void;
234
- clearFeatureSelection(): void;
235
- setFeatureIdUnderMouse(feature?: string): void;
236
- setContextMenuFeature(feature?: Feature): void;
237
- setMouseoverExtraInformation(extra?: string): void;
238
- } & {
239
- reload(): Promise<void>;
240
- } & {
241
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
242
- contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
243
- renderProps(): any;
244
- } & {
245
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
246
- afterAttach(): void;
247
- } & {
248
- message: undefined | string;
249
- stats: {
250
- currStatsBpPerPx: number;
251
- scoreMin: number;
252
- scoreMax: number;
253
- } | undefined;
254
- statsFetchInProgress: undefined | string;
255
- } & {
256
- updateQuantitativeStats(stats: {
257
- currStatsBpPerPx: number;
258
- scoreMin: number;
259
- scoreMax: number;
260
- }): void;
261
- setColor(color?: string): void;
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- setPosColor(color?: string): void;
263
- setNegColor(color?: string): void;
264
- setStatsLoading(arg?: string): void;
265
- selectFeature(feature: Feature): void;
266
- setResolution(res: number): void;
267
- setFill(fill: number): void;
268
- toggleLogScale(): void;
269
- setScaleType(scale?: string): void;
270
- setSummaryScoreMode(val: string): void;
271
- setAutoscale(val: string): void;
272
- setMaxScore(val?: number): void;
273
- setRendererType(val: string): void;
274
- setMinScore(val?: number): void;
275
- toggleCrossHatches(): void;
276
- setCrossHatches(cross: boolean): void;
277
- } & {
278
- readonly adapterTypeName: any;
279
- readonly rendererTypeNameSimple: string;
280
- readonly filters: undefined;
281
- readonly scaleType: string;
282
- readonly maxScore: number;
283
- readonly minScore: number;
284
- } & {
285
- readonly adapterCapabilities: string[];
286
- readonly rendererConfig: {
287
- [x: string]: any;
288
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
289
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
290
- [x: string]: any;
291
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
292
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
293
- [x: string]: any;
294
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
295
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
296
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
297
- readonly autoscaleType: string;
298
- } & {
299
- readonly domain: number[] | undefined;
300
- } & {
301
- readonly filled: boolean;
302
- readonly summaryScoreModeSetting: string;
303
- readonly scaleOpts: {
304
- domain: number[] | undefined;
305
- stats: {
306
- currStatsBpPerPx: number;
307
- scoreMin: number;
308
- scoreMax: number;
309
- } | undefined;
310
- autoscaleType: string;
311
- scaleType: string;
312
- inverted: boolean;
313
- };
314
- readonly canHaveFill: boolean;
315
- readonly displayCrossHatchesSetting: boolean;
316
- readonly hasResolution: boolean;
317
- readonly hasGlobalStats: boolean;
318
- } & {
319
- scoreTrackMenuItems(): ({
320
- label: string;
321
- subMenu: {
322
- label: string;
323
- onClick: () => void;
324
- }[];
325
- onClick?: undefined;
326
- } | {
327
- label: string;
328
- subMenu: {
329
- label: string;
330
- type: string;
331
- checked: boolean;
332
- onClick: () => void;
333
- }[];
334
- onClick?: undefined;
335
- } | {
336
- label: string;
337
- onClick: () => void;
338
- subMenu?: undefined;
339
- })[];
340
- } & {
341
- reload(): Promise<void>;
342
- } & {
343
- sourcesLoadingStopToken: string | undefined;
344
- featureUnderMouseVolatile: Feature | undefined;
345
- sourcesVolatile: Source[] | undefined;
346
- } & {
347
- setShowSidebar(arg: boolean): void;
348
- setSourcesLoading(str: string): void;
349
- setLayout(layout: Source[]): void;
350
- clearLayout(): void;
351
- setSources(sources: Source[]): void;
352
- setFeatureUnderMouse(f?: Feature): void;
353
- } & {
354
- readonly featureUnderMouse: Feature | undefined;
355
- readonly TooltipComponent: AnyReactComponentType;
356
- readonly rendererTypeName: string;
357
- } & {
358
- readonly graphType: boolean;
359
- readonly needsFullHeightScalebar: boolean;
360
- readonly isMultiRow: boolean;
361
- readonly needsCustomLegend: boolean;
362
- readonly canHaveFill: boolean;
363
- readonly renderColorBoxes: boolean;
364
- readonly prefersOffset: boolean;
365
- readonly sourcesWithoutLayout: {
366
- color: string;
367
- baseUri?: string;
368
- name: string;
369
- source: string;
370
- group?: string;
371
- }[] | undefined;
372
- readonly sources: {
373
- color: string;
374
- baseUri?: string;
375
- name: string;
376
- source: string;
377
- group?: string;
378
- }[] | undefined;
379
- readonly quantitativeStatsReady: boolean;
380
- } & {
381
- readonly rowHeight: number;
382
- readonly rowHeightTooSmallForScalebar: boolean;
383
- readonly useMinimalTicks: boolean;
384
- } & {
385
- adapterProps(): any;
386
- readonly ticks: {
387
- range: number[];
388
- values: number[];
389
- format: (d: import("d3-scale").NumberValue) => string;
390
- position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
391
- } | undefined;
392
- readonly colors: string[];
393
- readonly quantitativeStatsRelevantToCurrentZoom: boolean;
394
- } & {
395
- readonly legendFontSize: number;
396
- readonly canDisplayLegendLabels: boolean;
397
- readonly labelWidth: number;
398
- renderProps(): any;
399
- readonly hasResolution: boolean;
400
- readonly hasGlobalStats: boolean;
401
- readonly fillSetting: 2 | 1 | 0;
402
- } & {
403
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
404
- label: string;
405
- subMenu: ({
406
- label: string;
407
- subMenu: {
408
- label: string;
409
- onClick: () => void;
410
- }[];
411
- onClick?: undefined;
412
- } | {
413
- label: string;
414
- subMenu: {
415
- label: string;
416
- type: string;
417
- checked: boolean;
418
- onClick: () => void;
419
- }[];
420
- onClick?: undefined;
421
- } | {
422
- label: string;
423
- onClick: () => void;
424
- subMenu?: undefined;
425
- })[];
426
- type?: undefined;
427
- checked?: undefined;
428
- onClick?: undefined;
429
- } | {
430
- label: string;
431
- subMenu: {
432
- label: string;
433
- type: string;
434
- checked: boolean;
435
- onClick: () => void;
436
- }[];
437
- type?: undefined;
438
- checked?: undefined;
439
- onClick?: undefined;
440
- } | {
441
- type: string;
442
- label: string;
443
- checked: boolean;
444
- onClick: () => void;
445
- subMenu?: undefined;
446
- })[];
447
- } & {
448
- afterAttach(): void;
449
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
450
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
451
- export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
452
- export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
453
- export default stateModelFactory;