@jbrowse/plugin-wiggle 2.6.1 → 2.6.3

package/esm/MultiLinearWiggleDisplay/components/util.d.ts

@@ -1,3 +1,4 @@
+import { WiggleDisplayModel } from '../models/model';
 export declare function moveUp(arr: {
     name: string;
 }[], sel: string[], by?: number): {
@@ -8,3 +9,4 @@ export declare function moveDown(arr: {
 }[], sel: string[], by?: number): {
     name: string;
 }[];
+export declare function getOffset(model: WiggleDisplayModel): number;

package/esm/MultiLinearWiggleDisplay/components/util.js

@@ -1,3 +1,5 @@
+import { getContainingTrack, getContainingView, measureText, } from '@jbrowse/core/util';
+import { getConf } from '@jbrowse/core/configuration';
 export function moveUp(arr, sel, by = 1) {
     const idxs = sel
         .map(l => arr.findIndex(v => v.name === l))
@@ -28,4 +30,13 @@ export function moveDown(arr, sel, by = 1) {
     }
     return arr;
 }
-//# sourceMappingURL=util.js.map
+const trackLabelFontSize = 12.8;
+export function getOffset(model) {
+    const { prefersOffset } = model;
+    const { trackLabels } = getContainingView(model);
+    const track = getContainingTrack(model);
+    const trackName = getConf(track, 'name');
+    return trackLabels === 'overlapping' && !prefersOffset
+        ? measureText(trackName, trackLabelFontSize) + 100
+        : 10;
+}

package/esm/MultiLinearWiggleDisplay/index.js

@@ -16,4 +16,3 @@ export default (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiLinearWiggleDisplay/models/configSchema.js

@@ -52,4 +52,3 @@ export default function WiggleConfigFactory(pluginManager) {
         explicitlyTyped: true,
     });
 }
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiLinearWiggleDisplay/models/model.js

@@ -377,4 +377,3 @@ export function stateModelFactory(pluginManager, configSchema) {
     });
 }
 export default stateModelFactory;
-//# sourceMappingURL=model.js.map

package/esm/MultiLinearWiggleDisplay/models/renderSvg.js

@@ -1,13 +1,12 @@
 import React from 'react';
 import { getContainingView } from '@jbrowse/core/util';
 import { when } from 'mobx';
-import { StatBars } from '../components/WiggleDisplayComponent';
+import YScaleBars from '../components/YScaleBars';
 export async function renderSvg(self, opts, superRenderSvg) {
     await when(() => !!self.stats && !!self.regionCannotBeRenderedText);
     const { offsetPx } = getContainingView(self);
     return (React.createElement(React.Fragment, null,
         React.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
         React.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
-            React.createElement(StatBars, { model: self, orientation: "left", exportSVG: true }))));
+            React.createElement(YScaleBars, { model: self, orientation: "left", exportSVG: true }))));
 }
-//# sourceMappingURL=renderSvg.js.map

package/esm/MultiQuantitativeTrack/configSchema.js

@@ -13,4 +13,3 @@ const configSchema = (pluginManager) => {
     });
 };
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiQuantitativeTrack/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js

@@ -7,7 +7,7 @@ export default class MultiRowLineRenderer extends WiggleBaseRenderer {
         const { bpPerPx, sources, regions, features } = props;
         const [region] = regions;
         const groups = groupBy([...features.values()], f => f.get('source'));
-        const height = props.height / Object.keys(groups).length;
+        const height = props.height / sources.length;
         const width = (region.end - region.start) / bpPerPx;
         let feats = [];
         ctx.save();
@@ -30,4 +30,3 @@ export default class MultiRowLineRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiRowLineRenderer.js.map

package/esm/MultiRowLineRenderer/configSchema.js

@@ -31,4 +31,3 @@ const configSchema = ConfigurationSchema('MultiRowLineRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowLineRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -7,7 +7,7 @@ export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
         const { bpPerPx, sources, regions, features } = props;
         const [region] = regions;
         const groups = groupBy([...features.values()], f => f.get('source'));
-        const height = props.height / Object.keys(groups).length;
+        const height = props.height / sources.length;
         const width = (region.end - region.start) / bpPerPx;
         const Color = await import('color').then(f => f.default);
         let feats = [];
@@ -36,4 +36,3 @@ export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/esm/MultiRowXYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('MultiRowXYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowXYPlotRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js

@@ -87,4 +87,3 @@ MultiWiggleAdapter.capabilities = [
     'hasGlobalStats',
 ];
 export default MultiWiggleAdapter;
-//# sourceMappingURL=MultiWiggleAdapter.js.map

package/esm/MultiWiggleAdapter/configSchema.js

@@ -22,4 +22,3 @@ const MultiWiggleAdapter = ConfigurationSchema('MultiWiggleAdapter', {
     },
 }, { explicitlyTyped: true });
 export default MultiWiggleAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiWiggleAdapter/index.js

@@ -16,4 +16,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js

@@ -84,4 +84,3 @@ export default function MultiWiggleWidget({ model }) {
                 "to apply e.g. the color attribute to the view"),
             React.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
 }
-//# sourceMappingURL=AddTrackWorkflow.js.map

package/esm/MultiWiggleAddTrackWidget/index.js

@@ -9,4 +9,3 @@ export default (pm) => {
         stateModel: types.model({}),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleRendering.js

@@ -72,4 +72,3 @@ function WiggleRendering(props) {
         React.createElement(PrerenderedCanvas, { ...props })));
 }
 export default observer(WiggleRendering);
-//# sourceMappingURL=MultiWiggleRendering.js.map

package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js

@@ -26,4 +26,3 @@ export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiXYPlotRenderer.js.map

package/esm/MultiXYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('MultiXYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiXYPlotRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/QuantitativeTrack/configSchema.js

@@ -13,4 +13,3 @@ function configSchemaFactory(pluginManager) {
     });
 }
 export default configSchemaFactory;
-//# sourceMappingURL=configSchema.js.map

package/esm/QuantitativeTrack/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/Tooltip.js

@@ -68,4 +68,3 @@ function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect
             } }))) : null;
 }
 export default observer(Tooltip);
-//# sourceMappingURL=Tooltip.js.map

package/esm/WiggleBaseRenderer.js

@@ -34,4 +34,3 @@ export default class WiggleBaseRenderer extends FeatureRendererType {
         };
     }
 }
-//# sourceMappingURL=WiggleBaseRenderer.js.map

package/esm/WiggleRPC/MultiWiggleGetSources.js

@@ -41,4 +41,3 @@ export class MultiWiggleGetSources extends RpcMethodType {
         return dataAdapter.getSources(regions, deserializedArgs);
     }
 }
-//# sourceMappingURL=MultiWiggleGetSources.js.map

package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js

@@ -27,4 +27,3 @@ export class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
         return dataAdapter.getGlobalStats(deserializedArgs);
     }
 }
-//# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -44,4 +44,3 @@ export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
         throw new Error('Data adapter not found');
     }
 }
-//# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map

package/esm/WiggleRPC/rpcMethods.js

@@ -1,4 +1,3 @@
 export * from './MultiWiggleGetSources';
 export * from './WiggleGetMultiRegionQuantitativeStats';
 export * from './WiggleGetGlobalQuantitativeStats';
-//# sourceMappingURL=rpcMethods.js.map

package/esm/WiggleRendering.js

@@ -33,4 +33,3 @@ function WiggleRendering(props) {
         React.createElement(PrerenderedCanvas, { ...props })));
 }
 export default observer(WiggleRendering);
-//# sourceMappingURL=WiggleRendering.js.map

package/esm/XYPlotRenderer/XYPlotRenderer.js

@@ -23,4 +23,3 @@ export default class XYPlotRenderer extends WiggleBaseRenderer {
         });
     }
 }
-//# sourceMappingURL=XYPlotRenderer.js.map

package/esm/XYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('XYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/XYPlotRenderer/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
 export { default as XYPlotRenderer } from './XYPlotRenderer';
 export { default as ReactComponent } from '../WiggleRendering';
 export { default as configSchema } from './configSchema';
-//# sourceMappingURL=index.js.map

package/esm/configSchema.js

@@ -62,4 +62,3 @@ const WiggleRenderer = ConfigurationSchema('WiggleRenderer', {
     },
 }, { explicitlyTyped: true });
 export default WiggleRenderer;
-//# sourceMappingURL=configSchema.js.map

package/esm/drawxy.js

@@ -281,4 +281,3 @@ export function drawDensity(ctx, props) {
     ctx.restore();
     return { reducedFeatures };
 }
-//# sourceMappingURL=drawxy.js.map

package/esm/index.js

@@ -88,4 +88,3 @@ export * from './util';
 export { default as WiggleRendering } from './WiggleRendering';
 export { Tooltip, ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
 export { default as WiggleBaseRenderer } from './WiggleBaseRenderer';
-//# sourceMappingURL=index.js.map

package/esm/shared/SetMinMaxDialog.js

@@ -24,4 +24,3 @@ export default function SetMinMaxDlg(props) {
                     handleClose();
                 } }, "Submit"))));
 }
-//# sourceMappingURL=SetMinMaxDialog.js.map

package/esm/shared/YScaleBar.js

@@ -7,4 +7,3 @@ export default observer(function YScaleBar({ model, orientation, }) {
     const theme = useTheme();
     return ticks ? (React.createElement(Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? LEFT : RIGHT }, bg: theme.palette.background.default, fg: theme.palette.text.primary })) : null;
 });
-//# sourceMappingURL=YScaleBar.js.map

package/esm/shared/configShared.js

@@ -78,4 +78,3 @@ export default function sharedWiggleConfigFactory() {
         explicitlyTyped: true,
     });
 }
-//# sourceMappingURL=configShared.js.map

package/esm/shared/modelShared.js

@@ -451,4 +451,3 @@ export default function SharedWiggleMixin(configSchema) {
         };
     });
 }
-//# sourceMappingURL=modelShared.js.map

package/esm/util.js

@@ -221,4 +221,3 @@ export function toP(s = 0) {
 export function round(value) {
     return Math.round(value * 1e5) / 1e5;
 }
-//# sourceMappingURL=util.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "2.6.1",
+  "version": "2.6.3",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -20,7 +20,6 @@
   "main": "dist/index.js",
   "files": [
     "dist",
-    "src",
     "esm"
   ],
   "scripts": {
@@ -33,7 +32,7 @@
     "useSrc": "node ../../scripts/useSrc.js",
     "prebuild": "npm run clean",
     "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:es5": "tsc --build tsconfig.build.es5.json",
+    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
@@ -69,5 +68,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
+  "gitHead": "ed402c87efb0904858d602c363bd1757d5742129"
 }

package/dist/BigWigAdapter/BigWigAdapter.js.map

@@ -1 +0,0 @@
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package/dist/BigWigAdapter/configSchema.js.map

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package/dist/BigWigAdapter/index.js.map

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package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map

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package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map

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package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map

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