@jbrowse/plugin-wiggle 2.6.1 → 2.6.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (388) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +0 -1
  2. package/dist/BigWigAdapter/configSchema.js +0 -1
  3. package/dist/BigWigAdapter/index.js +0 -1
  4. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  5. package/dist/CreateMultiWiggleExtension/index.js +0 -1
  6. package/dist/DensityRenderer/DensityRenderer.js +0 -1
  7. package/dist/DensityRenderer/configSchema.js +0 -1
  8. package/dist/DensityRenderer/index.js +0 -1
  9. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
  10. package/dist/LinePlotRenderer/configSchema.js +0 -1
  11. package/dist/LinePlotRenderer/index.js +0 -1
  12. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  13. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
  14. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  15. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -4
  16. package/dist/LinearWiggleDisplay/index.js +0 -1
  17. package/dist/LinearWiggleDisplay/models/configSchema.js +0 -1
  18. package/dist/LinearWiggleDisplay/models/model.js +0 -1
  19. package/dist/LinearWiggleDisplay/models/renderSvg.js +0 -1
  20. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  21. package/dist/MultiDensityRenderer/configSchema.js +0 -1
  22. package/dist/MultiDensityRenderer/index.js +0 -1
  23. package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -1
  24. package/dist/MultiLineRenderer/configSchema.js +0 -1
  25. package/dist/MultiLineRenderer/index.js +0 -1
  26. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +9 -0
  27. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +28 -0
  28. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  29. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +9 -0
  30. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +11 -0
  31. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +6 -0
  32. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +22 -0
  33. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -1
  34. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  35. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  36. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -92
  37. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +8 -0
  38. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +53 -0
  39. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +2 -0
  40. package/dist/MultiLinearWiggleDisplay/components/util.js +14 -2
  41. package/dist/MultiLinearWiggleDisplay/index.js +0 -1
  42. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +0 -1
  43. package/dist/MultiLinearWiggleDisplay/models/model.js +0 -1
  44. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +2 -3
  45. package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
  46. package/dist/MultiQuantitativeTrack/index.js +0 -1
  47. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  48. package/dist/MultiRowLineRenderer/configSchema.js +0 -1
  49. package/dist/MultiRowLineRenderer/index.js +0 -1
  50. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  51. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
  52. package/dist/MultiRowXYPlotRenderer/index.js +0 -1
  53. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  54. package/dist/MultiWiggleAdapter/configSchema.js +0 -1
  55. package/dist/MultiWiggleAdapter/index.js +0 -1
  56. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +0 -1
  57. package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
  58. package/dist/MultiWiggleRendering.js +0 -1
  59. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -1
  60. package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
  61. package/dist/MultiXYPlotRenderer/index.js +0 -1
  62. package/dist/QuantitativeTrack/configSchema.js +0 -1
  63. package/dist/QuantitativeTrack/index.js +0 -1
  64. package/dist/Tooltip.js +0 -1
  65. package/dist/WiggleBaseRenderer.js +0 -1
  66. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
  67. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  68. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  69. package/dist/WiggleRPC/rpcMethods.js +0 -1
  70. package/dist/WiggleRendering.js +0 -1
  71. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
  72. package/dist/XYPlotRenderer/configSchema.js +0 -1
  73. package/dist/XYPlotRenderer/index.js +0 -1
  74. package/dist/configSchema.js +0 -1
  75. package/dist/drawxy.js +0 -1
  76. package/dist/index.js +0 -1
  77. package/dist/shared/SetMinMaxDialog.js +0 -1
  78. package/dist/shared/YScaleBar.js +0 -1
  79. package/dist/shared/configShared.js +0 -1
  80. package/dist/shared/modelShared.js +0 -1
  81. package/dist/util.js +0 -1
  82. package/esm/BigWigAdapter/BigWigAdapter.js +0 -1
  83. package/esm/BigWigAdapter/configSchema.js +0 -1
  84. package/esm/BigWigAdapter/index.js +0 -1
  85. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  86. package/esm/CreateMultiWiggleExtension/index.js +0 -1
  87. package/esm/DensityRenderer/DensityRenderer.js +0 -1
  88. package/esm/DensityRenderer/configSchema.js +0 -1
  89. package/esm/DensityRenderer/index.js +0 -1
  90. package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
  91. package/esm/LinePlotRenderer/configSchema.js +0 -1
  92. package/esm/LinePlotRenderer/index.js +0 -1
  93. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  94. package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
  95. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  96. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -2
  97. package/esm/LinearWiggleDisplay/index.js +0 -1
  98. package/esm/LinearWiggleDisplay/models/configSchema.js +0 -1
  99. package/esm/LinearWiggleDisplay/models/model.js +0 -1
  100. package/esm/LinearWiggleDisplay/models/renderSvg.js +0 -1
  101. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  102. package/esm/MultiDensityRenderer/configSchema.js +0 -1
  103. package/esm/MultiDensityRenderer/index.js +0 -1
  104. package/esm/MultiLineRenderer/MultiLineRenderer.js +0 -1
  105. package/esm/MultiLineRenderer/configSchema.js +0 -1
  106. package/esm/MultiLineRenderer/index.js +0 -1
  107. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +9 -0
  108. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +23 -0
  109. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  110. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +9 -0
  111. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +6 -0
  112. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +6 -0
  113. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +17 -0
  114. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -1
  115. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  116. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
  117. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -90
  118. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +8 -0
  119. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +47 -0
  120. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +2 -0
  121. package/esm/MultiLinearWiggleDisplay/components/util.js +12 -1
  122. package/esm/MultiLinearWiggleDisplay/index.js +0 -1
  123. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +0 -1
  124. package/esm/MultiLinearWiggleDisplay/models/model.js +0 -1
  125. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +2 -3
  126. package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
  127. package/esm/MultiQuantitativeTrack/index.js +0 -1
  128. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  129. package/esm/MultiRowLineRenderer/configSchema.js +0 -1
  130. package/esm/MultiRowLineRenderer/index.js +0 -1
  131. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  132. package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
  133. package/esm/MultiRowXYPlotRenderer/index.js +0 -1
  134. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  135. package/esm/MultiWiggleAdapter/configSchema.js +0 -1
  136. package/esm/MultiWiggleAdapter/index.js +0 -1
  137. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +0 -1
  138. package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
  139. package/esm/MultiWiggleRendering.js +0 -1
  140. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -1
  141. package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
  142. package/esm/MultiXYPlotRenderer/index.js +0 -1
  143. package/esm/QuantitativeTrack/configSchema.js +0 -1
  144. package/esm/QuantitativeTrack/index.js +0 -1
  145. package/esm/Tooltip.js +0 -1
  146. package/esm/WiggleBaseRenderer.js +0 -1
  147. package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
  148. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  149. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  150. package/esm/WiggleRPC/rpcMethods.js +0 -1
  151. package/esm/WiggleRendering.js +0 -1
  152. package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
  153. package/esm/XYPlotRenderer/configSchema.js +0 -1
  154. package/esm/XYPlotRenderer/index.js +0 -1
  155. package/esm/configSchema.js +0 -1
  156. package/esm/drawxy.js +0 -1
  157. package/esm/index.js +0 -1
  158. package/esm/shared/SetMinMaxDialog.js +0 -1
  159. package/esm/shared/YScaleBar.js +0 -1
  160. package/esm/shared/configShared.js +0 -1
  161. package/esm/shared/modelShared.js +0 -1
  162. package/esm/util.js +0 -1
  163. package/package.json +3 -4
  164. package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
  165. package/dist/BigWigAdapter/configSchema.js.map +0 -1
  166. package/dist/BigWigAdapter/index.js.map +0 -1
  167. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  168. package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
  169. package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
  170. package/dist/DensityRenderer/configSchema.js.map +0 -1
  171. package/dist/DensityRenderer/index.js.map +0 -1
  172. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  173. package/dist/LinePlotRenderer/configSchema.js.map +0 -1
  174. package/dist/LinePlotRenderer/index.js.map +0 -1
  175. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  176. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  177. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  178. package/dist/LinearWiggleDisplay/index.js.map +0 -1
  179. package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  180. package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
  181. package/dist/LinearWiggleDisplay/models/renderSvg.js.map +0 -1
  182. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  183. package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
  184. package/dist/MultiDensityRenderer/index.js.map +0 -1
  185. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  186. package/dist/MultiLineRenderer/configSchema.js.map +0 -1
  187. package/dist/MultiLineRenderer/index.js.map +0 -1
  188. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  189. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  190. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  191. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  192. package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  193. package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
  194. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  195. package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  196. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +0 -1
  197. package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
  198. package/dist/MultiQuantitativeTrack/index.js.map +0 -1
  199. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  200. package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
  201. package/dist/MultiRowLineRenderer/index.js.map +0 -1
  202. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  203. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  204. package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
  205. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  206. package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
  207. package/dist/MultiWiggleAdapter/index.js.map +0 -1
  208. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  209. package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
  210. package/dist/MultiWiggleRendering.js.map +0 -1
  211. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  212. package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
  213. package/dist/MultiXYPlotRenderer/index.js.map +0 -1
  214. package/dist/QuantitativeTrack/configSchema.js.map +0 -1
  215. package/dist/QuantitativeTrack/index.js.map +0 -1
  216. package/dist/Tooltip.js.map +0 -1
  217. package/dist/WiggleBaseRenderer.js.map +0 -1
  218. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  219. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  220. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  221. package/dist/WiggleRPC/rpcMethods.js.map +0 -1
  222. package/dist/WiggleRendering.js.map +0 -1
  223. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  224. package/dist/XYPlotRenderer/configSchema.js.map +0 -1
  225. package/dist/XYPlotRenderer/index.js.map +0 -1
  226. package/dist/configSchema.js.map +0 -1
  227. package/dist/drawxy.js.map +0 -1
  228. package/dist/index.js.map +0 -1
  229. package/dist/shared/SetMinMaxDialog.js.map +0 -1
  230. package/dist/shared/YScaleBar.js.map +0 -1
  231. package/dist/shared/configShared.js.map +0 -1
  232. package/dist/shared/modelShared.js.map +0 -1
  233. package/dist/util.js.map +0 -1
  234. package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
  235. package/esm/BigWigAdapter/configSchema.js.map +0 -1
  236. package/esm/BigWigAdapter/index.js.map +0 -1
  237. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  238. package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
  239. package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
  240. package/esm/DensityRenderer/configSchema.js.map +0 -1
  241. package/esm/DensityRenderer/index.js.map +0 -1
  242. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  243. package/esm/LinePlotRenderer/configSchema.js.map +0 -1
  244. package/esm/LinePlotRenderer/index.js.map +0 -1
  245. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  246. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  247. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  248. package/esm/LinearWiggleDisplay/index.js.map +0 -1
  249. package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  250. package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
  251. package/esm/LinearWiggleDisplay/models/renderSvg.js.map +0 -1
  252. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  253. package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
  254. package/esm/MultiDensityRenderer/index.js.map +0 -1
  255. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  256. package/esm/MultiLineRenderer/configSchema.js.map +0 -1
  257. package/esm/MultiLineRenderer/index.js.map +0 -1
  258. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  259. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  260. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  261. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  262. package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  263. package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
  264. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  265. package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  266. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +0 -1
  267. package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
  268. package/esm/MultiQuantitativeTrack/index.js.map +0 -1
  269. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  270. package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
  271. package/esm/MultiRowLineRenderer/index.js.map +0 -1
  272. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  273. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  274. package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
  275. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  276. package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
  277. package/esm/MultiWiggleAdapter/index.js.map +0 -1
  278. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  279. package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
  280. package/esm/MultiWiggleRendering.js.map +0 -1
  281. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  282. package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
  283. package/esm/MultiXYPlotRenderer/index.js.map +0 -1
  284. package/esm/QuantitativeTrack/configSchema.js.map +0 -1
  285. package/esm/QuantitativeTrack/index.js.map +0 -1
  286. package/esm/Tooltip.js.map +0 -1
  287. package/esm/WiggleBaseRenderer.js.map +0 -1
  288. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  289. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  290. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  291. package/esm/WiggleRPC/rpcMethods.js.map +0 -1
  292. package/esm/WiggleRendering.js.map +0 -1
  293. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  294. package/esm/XYPlotRenderer/configSchema.js.map +0 -1
  295. package/esm/XYPlotRenderer/index.js.map +0 -1
  296. package/esm/configSchema.js.map +0 -1
  297. package/esm/drawxy.js.map +0 -1
  298. package/esm/index.js.map +0 -1
  299. package/esm/shared/SetMinMaxDialog.js.map +0 -1
  300. package/esm/shared/YScaleBar.js.map +0 -1
  301. package/esm/shared/configShared.js.map +0 -1
  302. package/esm/shared/modelShared.js.map +0 -1
  303. package/esm/util.js.map +0 -1
  304. package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
  305. package/src/BigWigAdapter/BigWigAdapter.ts +0 -112
  306. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
  307. package/src/BigWigAdapter/configSchema.ts +0 -34
  308. package/src/BigWigAdapter/index.ts +0 -20
  309. package/src/BigWigAdapter/test_data/volvox.bw +0 -0
  310. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
  311. package/src/CreateMultiWiggleExtension/index.ts +0 -66
  312. package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
  313. package/src/DensityRenderer/DensityRenderer.ts +0 -14
  314. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
  315. package/src/DensityRenderer/configSchema.ts +0 -22
  316. package/src/DensityRenderer/index.ts +0 -17
  317. package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
  318. package/src/LinePlotRenderer/configSchema.ts +0 -30
  319. package/src/LinePlotRenderer/index.ts +0 -16
  320. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
  321. package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
  322. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
  323. package/src/LinearWiggleDisplay/index.ts +0 -26
  324. package/src/LinearWiggleDisplay/models/configSchema.ts +0 -47
  325. package/src/LinearWiggleDisplay/models/model.tsx +0 -232
  326. package/src/LinearWiggleDisplay/models/renderSvg.tsx +0 -29
  327. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -38
  328. package/src/MultiDensityRenderer/configSchema.ts +0 -21
  329. package/src/MultiDensityRenderer/index.ts +0 -16
  330. package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -28
  331. package/src/MultiLineRenderer/configSchema.ts +0 -39
  332. package/src/MultiLineRenderer/index.ts +0 -17
  333. package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
  334. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
  335. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
  336. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
  337. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
  338. package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
  339. package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
  340. package/src/MultiLinearWiggleDisplay/index.ts +0 -21
  341. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -74
  342. package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -469
  343. package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +0 -26
  344. package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
  345. package/src/MultiQuantitativeTrack/index.ts +0 -20
  346. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -35
  347. package/src/MultiRowLineRenderer/configSchema.ts +0 -42
  348. package/src/MultiRowLineRenderer/index.ts +0 -16
  349. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -42
  350. package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
  351. package/src/MultiRowXYPlotRenderer/index.ts +0 -16
  352. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
  353. package/src/MultiWiggleAdapter/configSchema.ts +0 -32
  354. package/src/MultiWiggleAdapter/index.ts +0 -24
  355. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  356. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
  357. package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
  358. package/src/MultiWiggleRendering.tsx +0 -125
  359. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
  360. package/src/MultiXYPlotRenderer/configSchema.ts +0 -54
  361. package/src/MultiXYPlotRenderer/index.ts +0 -17
  362. package/src/QuantitativeTrack/configSchema.ts +0 -23
  363. package/src/QuantitativeTrack/index.ts +0 -20
  364. package/src/Tooltip.tsx +0 -123
  365. package/src/WiggleBaseRenderer.tsx +0 -91
  366. package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
  367. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
  368. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
  369. package/src/WiggleRPC/rpcMethods.ts +0 -3
  370. package/src/WiggleRendering.test.js +0 -21
  371. package/src/WiggleRendering.tsx +0 -76
  372. package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
  373. package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
  374. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
  375. package/src/XYPlotRenderer/configSchema.ts +0 -55
  376. package/src/XYPlotRenderer/index.ts +0 -20
  377. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
  378. package/src/__snapshots__/index.test.ts.snap +0 -3
  379. package/src/configSchema.ts +0 -70
  380. package/src/drawxy.ts +0 -388
  381. package/src/index.test.ts +0 -16
  382. package/src/index.ts +0 -130
  383. package/src/shared/SetMinMaxDialog.tsx +0 -88
  384. package/src/shared/YScaleBar.tsx +0 -27
  385. package/src/shared/configShared.ts +0 -90
  386. package/src/shared/modelShared.ts +0 -510
  387. package/src/util.test.ts +0 -43
  388. package/src/util.ts +0 -318
@@ -81,4 +81,3 @@ BigWigAdapter.capabilities = [
81
81
  'hasGlobalStats',
82
82
  ];
83
83
  exports.default = BigWigAdapter;
84
- //# sourceMappingURL=BigWigAdapter.js.map
@@ -26,4 +26,3 @@ const BigWigAdapter = (0, configuration_1.ConfigurationSchema)('BigWigAdapter',
26
26
  },
27
27
  }, { explicitlyTyped: true });
28
28
  exports.default = BigWigAdapter;
29
- //# sourceMappingURL=configSchema.js.map
@@ -41,4 +41,3 @@ exports.default = (pluginManager) => {
41
41
  getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
42
42
  }));
43
43
  };
44
- //# sourceMappingURL=index.js.map
@@ -51,4 +51,3 @@ const ConfirmDialog = ({ tracks, onClose, }) => {
51
51
  react_1.default.createElement(material_1.Button, { onClick: () => onClose(true, { name: val }), color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
52
52
  };
53
53
  exports.default = ConfirmDialog;
54
- //# sourceMappingURL=ConfirmDialog.js.map
@@ -80,4 +80,3 @@ function default_1(pm) {
80
80
  });
81
81
  }
82
82
  exports.default = default_1;
83
- //# sourceMappingURL=index.js.map
@@ -11,4 +11,3 @@ class DensityRenderer extends WiggleBaseRenderer_1.default {
11
11
  }
12
12
  }
13
13
  exports.default = DensityRenderer;
14
- //# sourceMappingURL=DensityRenderer.js.map
@@ -17,4 +17,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer',
17
17
  explicitlyTyped: true,
18
18
  });
19
19
  exports.default = configSchema;
20
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -16,4 +16,3 @@ class LinePlotRenderer extends WiggleBaseRenderer_1.default {
16
16
  }
17
17
  }
18
18
  exports.default = LinePlotRenderer;
19
- //# sourceMappingURL=LinePlotRenderer.js.map
@@ -26,4 +26,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('LinePlotRenderer'
26
26
  explicitlyTyped: true,
27
27
  });
28
28
  exports.default = configSchema;
29
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -57,4 +57,3 @@ function SetColorDialog({ model, handleClose, }) {
57
57
  react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => handleClose() }, "Submit"))));
58
58
  }
59
59
  exports.default = (0, mobx_react_1.observer)(SetColorDialog);
60
- //# sourceMappingURL=SetColorDialog.js.map
@@ -38,4 +38,3 @@ const WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
38
38
  exports.default = WiggleTooltip;
39
39
  var Tooltip_2 = require("../../Tooltip");
40
40
  Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
41
- //# sourceMappingURL=Tooltip.js.map
@@ -4,4 +4,3 @@ declare const LinearWiggleDisplay: (props: {
4
4
  model: WiggleDisplayModel;
5
5
  }) => React.JSX.Element;
6
6
  export default LinearWiggleDisplay;
7
- export { default as YScaleBar } from '../../shared/YScaleBar';
@@ -3,7 +3,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.YScaleBar = void 0;
7
6
  const react_1 = __importDefault(require("react"));
8
7
  const mobx_react_1 = require("mobx-react");
9
8
  const util_1 = require("@jbrowse/core/util");
@@ -31,6 +30,3 @@ const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
31
30
  react_1.default.createElement(YScaleBar_1.default, { model: model }))) : null));
32
31
  });
33
32
  exports.default = LinearWiggleDisplay;
34
- var YScaleBar_2 = require("../../shared/YScaleBar");
35
- Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_2).default; } });
36
- //# sourceMappingURL=WiggleDisplayComponent.js.map
@@ -52,4 +52,3 @@ var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
52
52
  Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_1).default; } });
53
53
  var model_2 = require("./models/model");
54
54
  Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
55
- //# sourceMappingURL=index.js.map
@@ -40,4 +40,3 @@ function WiggleConfigFactory(pluginManager) {
40
40
  });
41
41
  }
42
42
  exports.default = WiggleConfigFactory;
43
- //# sourceMappingURL=configSchema.js.map
@@ -224,4 +224,3 @@ function stateModelFactory(pluginManager, configSchema) {
224
224
  });
225
225
  }
226
226
  exports.default = stateModelFactory;
227
- //# sourceMappingURL=model.js.map
@@ -18,4 +18,3 @@ async function renderSvg(self, opts, superRenderSvg) {
18
18
  react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
19
19
  }
20
20
  exports.renderSvg = renderSvg;
21
- //# sourceMappingURL=renderSvg.js.map
@@ -12,7 +12,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
12
12
  const { bpPerPx, sources, regions, features } = props;
13
13
  const [region] = regions;
14
14
  const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
15
- const height = props.height / Object.keys(groups).length;
15
+ const height = props.height / sources.length;
16
16
  const width = (region.end - region.start) / bpPerPx;
17
17
  let feats = [];
18
18
  ctx.save();
@@ -39,4 +39,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
39
39
  }
40
40
  }
41
41
  exports.default = MultiXYPlotRenderer;
42
- //# sourceMappingURL=MultiDensityRenderer.js.map
@@ -17,4 +17,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiDensityRende
17
17
  explicitlyTyped: true,
18
18
  });
19
19
  exports.default = configSchema;
20
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -28,4 +28,3 @@ class MultiLineRenderer extends WiggleBaseRenderer_1.default {
28
28
  }
29
29
  }
30
30
  exports.default = MultiLineRenderer;
31
- //# sourceMappingURL=MultiLineRenderer.js.map
@@ -36,4 +36,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiLineRenderer
36
36
  explicitlyTyped: true,
37
37
  });
38
38
  exports.default = configSchema;
39
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -0,0 +1,9 @@
1
+ import React from 'react';
2
+ import { WiggleDisplayModel } from '../models/model';
3
+ declare const ColorLegend: ({ model, rowHeight, labelWidth, exportSVG, }: {
4
+ model: WiggleDisplayModel;
5
+ rowHeight: number;
6
+ labelWidth: number;
7
+ exportSVG?: boolean | undefined;
8
+ }) => React.JSX.Element | null;
9
+ export default ColorLegend;
@@ -0,0 +1,28 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const mobx_react_1 = require("mobx-react");
8
+ const RectBg_1 = __importDefault(require("./RectBg"));
9
+ const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
10
+ const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
11
+ const svgFontSize = Math.min(rowHeight, 12);
12
+ const canDisplayLabel = rowHeight > 11;
13
+ const colorBoxWidth = renderColorBoxes ? 15 : 0;
14
+ const legendWidth = labelWidth + colorBoxWidth + 5;
15
+ const svgOffset = exportSVG ? 10 : 0;
16
+ const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
17
+ return sources ? (react_1.default.createElement(react_1.default.Fragment, null,
18
+ /* 0.25 for hanging letters like g */
19
+ needsFullHeightScalebar ? (react_1.default.createElement(RectBg_1.default, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
20
+ sources.map((source, idx) => {
21
+ const boxHeight = Math.min(20, rowHeight);
22
+ return (react_1.default.createElement(react_1.default.Fragment, { key: `${source.name}-${idx}` },
23
+ needsFullHeightScalebar ? null : (react_1.default.createElement(RectBg_1.default, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })),
24
+ source.color ? (react_1.default.createElement(RectBg_1.default, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
25
+ canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
26
+ }))) : null;
27
+ });
28
+ exports.default = ColorLegend;
@@ -40,4 +40,3 @@ function DraggableDialog(props) {
40
40
  children)));
41
41
  }
42
42
  exports.default = (0, mobx_react_1.observer)(DraggableDialog);
43
- //# sourceMappingURL=DraggableDialog.js.map
@@ -0,0 +1,9 @@
1
+ import React from 'react';
2
+ declare const RectBg: (props: {
3
+ x: number;
4
+ y: number;
5
+ width: number;
6
+ height: number;
7
+ color?: string;
8
+ }) => React.JSX.Element;
9
+ export default RectBg;
@@ -0,0 +1,11 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const RectBg = (props) => {
8
+ const { color = 'rgb(255,255,255,0.8)' } = props;
9
+ return react_1.default.createElement("rect", { ...props, fill: color });
10
+ };
11
+ exports.default = RectBg;
@@ -0,0 +1,6 @@
1
+ import React from 'react';
2
+ import { WiggleDisplayModel } from '../models/model';
3
+ declare const ScoreLegend: ({ model }: {
4
+ model: WiggleDisplayModel;
5
+ }) => React.JSX.Element;
6
+ export default ScoreLegend;
@@ -0,0 +1,22 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const util_1 = require("@jbrowse/core/util");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const RectBg_1 = __importDefault(require("./RectBg"));
10
+ const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
11
+ const { ticks, scaleType } = model;
12
+ const { width } = (0, util_1.getContainingView)(model);
13
+ const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
14
+ (scaleType === 'log' ? ' (log scale)' : '');
15
+ const len = (0, util_1.measureText)(legend, 14);
16
+ const padding = 25;
17
+ const xpos = width - len - padding;
18
+ return (react_1.default.createElement(react_1.default.Fragment, null,
19
+ react_1.default.createElement(RectBg_1.default, { y: 0, x: xpos, width: len + 6, height: 16 }),
20
+ react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
21
+ });
22
+ exports.default = ScoreLegend;
@@ -168,4 +168,3 @@ function SourcesGrid({ rows, onChange, showTips, }) {
168
168
  : rows);
169
169
  } }))));
170
170
  }
171
- //# sourceMappingURL=SetColorDialog.js.map
@@ -47,4 +47,3 @@ const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
47
47
  exports.default = WiggleTooltip;
48
48
  var Tooltip_2 = require("../../Tooltip");
49
49
  Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
50
- //# sourceMappingURL=Tooltip.js.map
@@ -1,10 +1,5 @@
1
1
  import React from 'react';
2
2
  import { WiggleDisplayModel } from '../models/model';
3
- export declare const StatBars: (props: {
4
- model: WiggleDisplayModel;
5
- orientation?: string;
6
- exportSVG?: boolean;
7
- }) => React.JSX.Element | null;
8
3
  declare const _default: (props: {
9
4
  model: WiggleDisplayModel;
10
5
  }) => React.JSX.Element;
@@ -3,103 +3,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.YScaleBar = exports.StatBars = void 0;
6
+ exports.YScaleBar = void 0;
7
7
  const react_1 = __importDefault(require("react"));
8
- const util_1 = require("@jbrowse/core/util");
9
- const configuration_1 = require("@jbrowse/core/configuration");
10
8
  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
11
9
  const mobx_react_1 = require("mobx-react");
12
- const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
13
- const trackLabelFontSize = 12.8;
14
- function getOffset(model) {
15
- const { prefersOffset } = model;
16
- const { trackLabels } = (0, util_1.getContainingView)(model);
17
- const track = (0, util_1.getContainingTrack)(model);
18
- const trackName = (0, configuration_1.getConf)(track, 'name');
19
- return trackLabels === 'overlapping' && !prefersOffset
20
- ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
21
- : 10;
22
- }
23
- const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
24
- if (exportSVG) {
25
- return react_1.default.createElement(react_1.default.Fragment, null, children);
26
- }
27
- else {
28
- const { height } = model;
29
- return (react_1.default.createElement("svg", { style: {
30
- position: 'absolute',
31
- top: 0,
32
- left: 0,
33
- pointerEvents: 'none',
34
- height,
35
- width: (0, util_1.getContainingView)(model).width,
36
- } }, children));
37
- }
38
- });
39
- const RectBg = (props) => {
40
- const { color = 'rgb(255,255,255,0.8)' } = props;
41
- return react_1.default.createElement("rect", { ...props, fill: color });
42
- };
43
- const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
44
- const { ticks, scaleType } = model;
45
- const { width } = (0, util_1.getContainingView)(model);
46
- const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
47
- (scaleType === 'log' ? ' (log scale)' : '');
48
- const len = (0, util_1.measureText)(legend, 14);
49
- const padding = 25;
50
- const xpos = width - len - padding;
51
- return (react_1.default.createElement(react_1.default.Fragment, null,
52
- react_1.default.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
53
- react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
54
- });
55
- const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
56
- const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
57
- const svgFontSize = Math.min(rowHeight, 12);
58
- const canDisplayLabel = rowHeight > 11;
59
- const colorBoxWidth = renderColorBoxes ? 15 : 0;
60
- const legendWidth = labelWidth + colorBoxWidth + 5;
61
- const svgOffset = exportSVG ? 10 : 0;
62
- const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
63
- return sources ? (react_1.default.createElement(react_1.default.Fragment, null,
64
- /* 0.25 for hanging letters like g */
65
- needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
66
- sources.map((source, idx) => {
67
- const boxHeight = Math.min(20, rowHeight);
68
- return (react_1.default.createElement(react_1.default.Fragment, { key: `${source.name}-${idx}` },
69
- needsFullHeightScalebar ? null : (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })),
70
- source.color ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
71
- canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
72
- }))) : null;
73
- });
74
- exports.StatBars = (0, mobx_react_1.observer)(function (props) {
75
- const { model, orientation, exportSVG } = props;
76
- const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
77
- const svgFontSize = Math.min(rowHeight, 12);
78
- const canDisplayLabel = rowHeight > 11;
79
- const { width: viewWidth } = (0, util_1.getContainingView)(model);
80
- const minWidth = 20;
81
- const ready = stats && sources;
82
- if (!ready) {
83
- return null;
84
- }
85
- const labelWidth = Math.max(...(sources
86
- .map(s => (0, util_1.measureText)(s.name, svgFontSize))
87
- .map(width => (canDisplayLabel ? width : minWidth)) || [0]));
88
- return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
89
- react_1.default.createElement("g", { transform: `translate(${!exportSVG ? getOffset(model) : 0},0)` },
90
- react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
91
- react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
92
- react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
93
- react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
94
- rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
95
- react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
96
- });
10
+ const YScaleBars_1 = __importDefault(require("./YScaleBars"));
97
11
  exports.default = (0, mobx_react_1.observer)((props) => {
98
12
  const { model } = props;
99
13
  return (react_1.default.createElement("div", null,
100
14
  react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
101
- react_1.default.createElement(exports.StatBars, { model: model })));
15
+ react_1.default.createElement(YScaleBars_1.default, { model: model })));
102
16
  });
103
- var YScaleBar_2 = require("../../shared/YScaleBar");
104
- Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_2).default; } });
105
- //# sourceMappingURL=WiggleDisplayComponent.js.map
17
+ var YScaleBar_1 = require("../../shared/YScaleBar");
18
+ Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_1).default; } });
@@ -0,0 +1,8 @@
1
+ import React from 'react';
2
+ import { WiggleDisplayModel } from '../models/model';
3
+ export declare const YScaleBars: (props: {
4
+ model: WiggleDisplayModel;
5
+ orientation?: string;
6
+ exportSVG?: boolean;
7
+ }) => React.JSX.Element | null;
8
+ export default YScaleBars;
@@ -0,0 +1,53 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.YScaleBars = void 0;
7
+ const react_1 = __importDefault(require("react"));
8
+ const util_1 = require("@jbrowse/core/util");
9
+ const mobx_react_1 = require("mobx-react");
10
+ const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
11
+ const ColorLegend_1 = __importDefault(require("./ColorLegend"));
12
+ const ScoreLegend_1 = __importDefault(require("./ScoreLegend"));
13
+ const util_2 = require("./util");
14
+ const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
15
+ if (exportSVG) {
16
+ return react_1.default.createElement(react_1.default.Fragment, null, children);
17
+ }
18
+ else {
19
+ const { height } = model;
20
+ return (react_1.default.createElement("svg", { style: {
21
+ position: 'absolute',
22
+ top: 0,
23
+ left: 0,
24
+ pointerEvents: 'none',
25
+ height,
26
+ width: (0, util_1.getContainingView)(model).width,
27
+ } }, children));
28
+ }
29
+ });
30
+ exports.YScaleBars = (0, mobx_react_1.observer)(function (props) {
31
+ const { model, orientation, exportSVG } = props;
32
+ const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
33
+ const svgFontSize = Math.min(rowHeight, 12);
34
+ const canDisplayLabel = rowHeight > 11;
35
+ const { width: viewWidth } = (0, util_1.getContainingView)(model);
36
+ const minWidth = 20;
37
+ const ready = stats && sources;
38
+ if (!ready) {
39
+ return null;
40
+ }
41
+ const labelWidth = Math.max(...(sources
42
+ .map(s => (0, util_1.measureText)(s.name, svgFontSize))
43
+ .map(width => (canDisplayLabel ? width : minWidth)) || [0]));
44
+ return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
45
+ react_1.default.createElement("g", { transform: `translate(${!exportSVG ? (0, util_2.getOffset)(model) : 0},0)` },
46
+ react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
47
+ react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
48
+ react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
49
+ react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
50
+ rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend_1.default, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
51
+ react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
52
+ });
53
+ exports.default = exports.YScaleBars;
@@ -1,3 +1,4 @@
1
+ import { WiggleDisplayModel } from '../models/model';
1
2
  export declare function moveUp(arr: {
2
3
  name: string;
3
4
  }[], sel: string[], by?: number): {
@@ -8,3 +9,4 @@ export declare function moveDown(arr: {
8
9
  }[], sel: string[], by?: number): {
9
10
  name: string;
10
11
  }[];
12
+ export declare function getOffset(model: WiggleDisplayModel): number;
@@ -1,6 +1,8 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.moveDown = exports.moveUp = void 0;
3
+ exports.getOffset = exports.moveDown = exports.moveUp = void 0;
4
+ const util_1 = require("@jbrowse/core/util");
5
+ const configuration_1 = require("@jbrowse/core/configuration");
4
6
  function moveUp(arr, sel, by = 1) {
5
7
  const idxs = sel
6
8
  .map(l => arr.findIndex(v => v.name === l))
@@ -33,4 +35,14 @@ function moveDown(arr, sel, by = 1) {
33
35
  return arr;
34
36
  }
35
37
  exports.moveDown = moveDown;
36
- //# sourceMappingURL=util.js.map
38
+ const trackLabelFontSize = 12.8;
39
+ function getOffset(model) {
40
+ const { prefersOffset } = model;
41
+ const { trackLabels } = (0, util_1.getContainingView)(model);
42
+ const track = (0, util_1.getContainingTrack)(model);
43
+ const trackName = (0, configuration_1.getConf)(track, 'name');
44
+ return trackLabels === 'overlapping' && !prefersOffset
45
+ ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
46
+ : 10;
47
+ }
48
+ exports.getOffset = getOffset;
@@ -44,4 +44,3 @@ exports.default = (pluginManager) => {
44
44
  });
45
45
  });
46
46
  };
47
- //# sourceMappingURL=index.js.map
@@ -58,4 +58,3 @@ function WiggleConfigFactory(pluginManager) {
58
58
  });
59
59
  }
60
60
  exports.default = WiggleConfigFactory;
61
- //# sourceMappingURL=configSchema.js.map
@@ -407,4 +407,3 @@ function stateModelFactory(pluginManager, configSchema) {
407
407
  }
408
408
  exports.stateModelFactory = stateModelFactory;
409
409
  exports.default = stateModelFactory;
410
- //# sourceMappingURL=model.js.map
@@ -7,14 +7,13 @@ exports.renderSvg = void 0;
7
7
  const react_1 = __importDefault(require("react"));
8
8
  const util_1 = require("@jbrowse/core/util");
9
9
  const mobx_1 = require("mobx");
10
- const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
10
+ const YScaleBars_1 = __importDefault(require("../components/YScaleBars"));
11
11
  async function renderSvg(self, opts, superRenderSvg) {
12
12
  await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
13
13
  const { offsetPx } = (0, util_1.getContainingView)(self);
14
14
  return (react_1.default.createElement(react_1.default.Fragment, null,
15
15
  react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
16
16
  react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
17
- react_1.default.createElement(WiggleDisplayComponent_1.StatBars, { model: self, orientation: "left", exportSVG: true }))));
17
+ react_1.default.createElement(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }))));
18
18
  }
19
19
  exports.renderSvg = renderSvg;
20
- //# sourceMappingURL=renderSvg.js.map
@@ -15,4 +15,3 @@ const configSchema = (pluginManager) => {
15
15
  });
16
16
  };
17
17
  exports.default = configSchema;
18
- //# sourceMappingURL=configSchema.js.map
@@ -17,4 +17,3 @@ exports.default = (pluginManager) => {
17
17
  });
18
18
  });
19
19
  };
20
- //# sourceMappingURL=index.js.map
@@ -12,7 +12,7 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
12
12
  const { bpPerPx, sources, regions, features } = props;
13
13
  const [region] = regions;
14
14
  const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
15
- const height = props.height / Object.keys(groups).length;
15
+ const height = props.height / sources.length;
16
16
  const width = (region.end - region.start) / bpPerPx;
17
17
  let feats = [];
18
18
  ctx.save();
@@ -36,4 +36,3 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
36
36
  }
37
37
  }
38
38
  exports.default = MultiRowLineRenderer;
39
- //# sourceMappingURL=MultiRowLineRenderer.js.map
@@ -36,4 +36,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRende
36
36
  explicitlyTyped: true,
37
37
  });
38
38
  exports.default = configSchema;
39
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -35,7 +35,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
35
35
  const { bpPerPx, sources, regions, features } = props;
36
36
  const [region] = regions;
37
37
  const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
38
- const height = props.height / Object.keys(groups).length;
38
+ const height = props.height / sources.length;
39
39
  const width = (region.end - region.start) / bpPerPx;
40
40
  const Color = await Promise.resolve().then(() => __importStar(require('color'))).then(f => f.default);
41
41
  let feats = [];
@@ -65,4 +65,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
65
65
  }
66
66
  }
67
67
  exports.default = MultiXYPlotRenderer;
68
- //# sourceMappingURL=MultiRowXYPlotRenderer.js.map
@@ -50,4 +50,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRen
50
50
  explicitlyTyped: true,
51
51
  });
52
52
  exports.default = configSchema;
53
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -89,4 +89,3 @@ MultiWiggleAdapter.capabilities = [
89
89
  'hasGlobalStats',
90
90
  ];
91
91
  exports.default = MultiWiggleAdapter;
92
- //# sourceMappingURL=MultiWiggleAdapter.js.map