@jbrowse/plugin-wiggle 2.6.1 → 2.6.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +0 -1
- package/dist/BigWigAdapter/configSchema.js +0 -1
- package/dist/BigWigAdapter/index.js +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/dist/CreateMultiWiggleExtension/index.js +0 -1
- package/dist/DensityRenderer/DensityRenderer.js +0 -1
- package/dist/DensityRenderer/configSchema.js +0 -1
- package/dist/DensityRenderer/index.js +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/dist/LinePlotRenderer/configSchema.js +0 -1
- package/dist/LinePlotRenderer/index.js +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -4
- package/dist/LinearWiggleDisplay/index.js +0 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js +0 -1
- package/dist/LinearWiggleDisplay/models/model.js +0 -1
- package/dist/LinearWiggleDisplay/models/renderSvg.js +0 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/dist/MultiDensityRenderer/configSchema.js +0 -1
- package/dist/MultiDensityRenderer/index.js +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +0 -1
- package/dist/MultiLineRenderer/configSchema.js +0 -1
- package/dist/MultiLineRenderer/index.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +9 -0
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +28 -0
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +9 -0
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +11 -0
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +6 -0
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +22 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +5 -92
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +8 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +53 -0
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +2 -0
- package/dist/MultiLinearWiggleDisplay/components/util.js +14 -2
- package/dist/MultiLinearWiggleDisplay/index.js +0 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +0 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js +0 -1
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +2 -3
- package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
- package/dist/MultiQuantitativeTrack/index.js +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.js +0 -1
- package/dist/MultiRowLineRenderer/index.js +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js +0 -1
- package/dist/MultiWiggleAdapter/index.js +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +0 -1
- package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
- package/dist/MultiWiggleRendering.js +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -1
- package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiXYPlotRenderer/index.js +0 -1
- package/dist/QuantitativeTrack/configSchema.js +0 -1
- package/dist/QuantitativeTrack/index.js +0 -1
- package/dist/Tooltip.js +0 -1
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/rpcMethods.js +0 -1
- package/dist/WiggleRendering.js +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/dist/XYPlotRenderer/configSchema.js +0 -1
- package/dist/XYPlotRenderer/index.js +0 -1
- package/dist/configSchema.js +0 -1
- package/dist/drawxy.js +0 -1
- package/dist/index.js +0 -1
- package/dist/shared/SetMinMaxDialog.js +0 -1
- package/dist/shared/YScaleBar.js +0 -1
- package/dist/shared/configShared.js +0 -1
- package/dist/shared/modelShared.js +0 -1
- package/dist/util.js +0 -1
- package/esm/BigWigAdapter/BigWigAdapter.js +0 -1
- package/esm/BigWigAdapter/configSchema.js +0 -1
- package/esm/BigWigAdapter/index.js +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/esm/CreateMultiWiggleExtension/index.js +0 -1
- package/esm/DensityRenderer/DensityRenderer.js +0 -1
- package/esm/DensityRenderer/configSchema.js +0 -1
- package/esm/DensityRenderer/index.js +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/esm/LinePlotRenderer/configSchema.js +0 -1
- package/esm/LinePlotRenderer/index.js +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -2
- package/esm/LinearWiggleDisplay/index.js +0 -1
- package/esm/LinearWiggleDisplay/models/configSchema.js +0 -1
- package/esm/LinearWiggleDisplay/models/model.js +0 -1
- package/esm/LinearWiggleDisplay/models/renderSvg.js +0 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +0 -1
- package/esm/MultiDensityRenderer/index.js +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js +0 -1
- package/esm/MultiLineRenderer/configSchema.js +0 -1
- package/esm/MultiLineRenderer/index.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +9 -0
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +23 -0
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +9 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +6 -0
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +6 -0
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +17 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -5
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -90
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +8 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +47 -0
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +2 -0
- package/esm/MultiLinearWiggleDisplay/components/util.js +12 -1
- package/esm/MultiLinearWiggleDisplay/index.js +0 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +0 -1
- package/esm/MultiLinearWiggleDisplay/models/model.js +0 -1
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +2 -3
- package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
- package/esm/MultiQuantitativeTrack/index.js +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.js +0 -1
- package/esm/MultiRowLineRenderer/index.js +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js +0 -1
- package/esm/MultiWiggleAdapter/index.js +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +0 -1
- package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
- package/esm/MultiWiggleRendering.js +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +0 -1
- package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiXYPlotRenderer/index.js +0 -1
- package/esm/QuantitativeTrack/configSchema.js +0 -1
- package/esm/QuantitativeTrack/index.js +0 -1
- package/esm/Tooltip.js +0 -1
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/rpcMethods.js +0 -1
- package/esm/WiggleRendering.js +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/esm/XYPlotRenderer/configSchema.js +0 -1
- package/esm/XYPlotRenderer/index.js +0 -1
- package/esm/configSchema.js +0 -1
- package/esm/drawxy.js +0 -1
- package/esm/index.js +0 -1
- package/esm/shared/SetMinMaxDialog.js +0 -1
- package/esm/shared/YScaleBar.js +0 -1
- package/esm/shared/configShared.js +0 -1
- package/esm/shared/modelShared.js +0 -1
- package/esm/util.js +0 -1
- package/package.json +3 -4
- package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/dist/BigWigAdapter/configSchema.js.map +0 -1
- package/dist/BigWigAdapter/index.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
- package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
- package/dist/DensityRenderer/configSchema.js.map +0 -1
- package/dist/DensityRenderer/index.js.map +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/dist/LinePlotRenderer/configSchema.js.map +0 -1
- package/dist/LinePlotRenderer/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/LinearWiggleDisplay/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/renderSvg.js.map +0 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
- package/dist/MultiDensityRenderer/index.js.map +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/dist/MultiLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiLineRenderer/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +0 -1
- package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/dist/MultiQuantitativeTrack/index.js.map +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowLineRenderer/index.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/dist/MultiWiggleAdapter/index.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/dist/MultiWiggleRendering.js.map +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiXYPlotRenderer/index.js.map +0 -1
- package/dist/QuantitativeTrack/configSchema.js.map +0 -1
- package/dist/QuantitativeTrack/index.js.map +0 -1
- package/dist/Tooltip.js.map +0 -1
- package/dist/WiggleBaseRenderer.js.map +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/rpcMethods.js.map +0 -1
- package/dist/WiggleRendering.js.map +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/dist/XYPlotRenderer/configSchema.js.map +0 -1
- package/dist/XYPlotRenderer/index.js.map +0 -1
- package/dist/configSchema.js.map +0 -1
- package/dist/drawxy.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/shared/SetMinMaxDialog.js.map +0 -1
- package/dist/shared/YScaleBar.js.map +0 -1
- package/dist/shared/configShared.js.map +0 -1
- package/dist/shared/modelShared.js.map +0 -1
- package/dist/util.js.map +0 -1
- package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/esm/BigWigAdapter/configSchema.js.map +0 -1
- package/esm/BigWigAdapter/index.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
- package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
- package/esm/DensityRenderer/configSchema.js.map +0 -1
- package/esm/DensityRenderer/index.js.map +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/esm/LinePlotRenderer/configSchema.js.map +0 -1
- package/esm/LinePlotRenderer/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/LinearWiggleDisplay/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/renderSvg.js.map +0 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
- package/esm/MultiDensityRenderer/index.js.map +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/esm/MultiLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiLineRenderer/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +0 -1
- package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/esm/MultiQuantitativeTrack/index.js.map +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowLineRenderer/index.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/esm/MultiWiggleAdapter/index.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/esm/MultiWiggleRendering.js.map +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiXYPlotRenderer/index.js.map +0 -1
- package/esm/QuantitativeTrack/configSchema.js.map +0 -1
- package/esm/QuantitativeTrack/index.js.map +0 -1
- package/esm/Tooltip.js.map +0 -1
- package/esm/WiggleBaseRenderer.js.map +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/rpcMethods.js.map +0 -1
- package/esm/WiggleRendering.js.map +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/esm/XYPlotRenderer/configSchema.js.map +0 -1
- package/esm/XYPlotRenderer/index.js.map +0 -1
- package/esm/configSchema.js.map +0 -1
- package/esm/drawxy.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/esm/shared/SetMinMaxDialog.js.map +0 -1
- package/esm/shared/YScaleBar.js.map +0 -1
- package/esm/shared/configShared.js.map +0 -1
- package/esm/shared/modelShared.js.map +0 -1
- package/esm/util.js.map +0 -1
- package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
- package/src/BigWigAdapter/BigWigAdapter.ts +0 -112
- package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
- package/src/BigWigAdapter/configSchema.ts +0 -34
- package/src/BigWigAdapter/index.ts +0 -20
- package/src/BigWigAdapter/test_data/volvox.bw +0 -0
- package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
- package/src/CreateMultiWiggleExtension/index.ts +0 -66
- package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
- package/src/DensityRenderer/DensityRenderer.ts +0 -14
- package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
- package/src/DensityRenderer/configSchema.ts +0 -22
- package/src/DensityRenderer/index.ts +0 -17
- package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
- package/src/LinePlotRenderer/configSchema.ts +0 -30
- package/src/LinePlotRenderer/index.ts +0 -16
- package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
- package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
- package/src/LinearWiggleDisplay/index.ts +0 -26
- package/src/LinearWiggleDisplay/models/configSchema.ts +0 -47
- package/src/LinearWiggleDisplay/models/model.tsx +0 -232
- package/src/LinearWiggleDisplay/models/renderSvg.tsx +0 -29
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -38
- package/src/MultiDensityRenderer/configSchema.ts +0 -21
- package/src/MultiDensityRenderer/index.ts +0 -16
- package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -28
- package/src/MultiLineRenderer/configSchema.ts +0 -39
- package/src/MultiLineRenderer/index.ts +0 -17
- package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
- package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
- package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
- package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
- package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
- package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
- package/src/MultiLinearWiggleDisplay/index.ts +0 -21
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -74
- package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -469
- package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +0 -26
- package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
- package/src/MultiQuantitativeTrack/index.ts +0 -20
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -35
- package/src/MultiRowLineRenderer/configSchema.ts +0 -42
- package/src/MultiRowLineRenderer/index.ts +0 -16
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -42
- package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
- package/src/MultiRowXYPlotRenderer/index.ts +0 -16
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
- package/src/MultiWiggleAdapter/configSchema.ts +0 -32
- package/src/MultiWiggleAdapter/index.ts +0 -24
- package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
- package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
- package/src/MultiWiggleRendering.tsx +0 -125
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
- package/src/MultiXYPlotRenderer/configSchema.ts +0 -54
- package/src/MultiXYPlotRenderer/index.ts +0 -17
- package/src/QuantitativeTrack/configSchema.ts +0 -23
- package/src/QuantitativeTrack/index.ts +0 -20
- package/src/Tooltip.tsx +0 -123
- package/src/WiggleBaseRenderer.tsx +0 -91
- package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
- package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
- package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
- package/src/WiggleRPC/rpcMethods.ts +0 -3
- package/src/WiggleRendering.test.js +0 -21
- package/src/WiggleRendering.tsx +0 -76
- package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
- package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
- package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
- package/src/XYPlotRenderer/configSchema.ts +0 -55
- package/src/XYPlotRenderer/index.ts +0 -20
- package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
- package/src/__snapshots__/index.test.ts.snap +0 -3
- package/src/configSchema.ts +0 -70
- package/src/drawxy.ts +0 -388
- package/src/index.test.ts +0 -16
- package/src/index.ts +0 -130
- package/src/shared/SetMinMaxDialog.tsx +0 -88
- package/src/shared/YScaleBar.tsx +0 -27
- package/src/shared/configShared.ts +0 -90
- package/src/shared/modelShared.ts +0 -510
- package/src/util.test.ts +0 -43
- package/src/util.ts +0 -318
|
@@ -51,4 +51,3 @@ const ConfirmDialog = ({ tracks, onClose, }) => {
|
|
|
51
51
|
react_1.default.createElement(material_1.Button, { onClick: () => onClose(true, { name: val }), color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
|
|
52
52
|
};
|
|
53
53
|
exports.default = ConfirmDialog;
|
|
54
|
-
//# sourceMappingURL=ConfirmDialog.js.map
|
|
@@ -57,4 +57,3 @@ function SetColorDialog({ model, handleClose, }) {
|
|
|
57
57
|
react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => handleClose() }, "Submit"))));
|
|
58
58
|
}
|
|
59
59
|
exports.default = (0, mobx_react_1.observer)(SetColorDialog);
|
|
60
|
-
//# sourceMappingURL=SetColorDialog.js.map
|
|
@@ -38,4 +38,3 @@ const WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
|
|
|
38
38
|
exports.default = WiggleTooltip;
|
|
39
39
|
var Tooltip_2 = require("../../Tooltip");
|
|
40
40
|
Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
|
|
41
|
-
//# sourceMappingURL=Tooltip.js.map
|
|
@@ -3,7 +3,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.YScaleBar = void 0;
|
|
7
6
|
const react_1 = __importDefault(require("react"));
|
|
8
7
|
const mobx_react_1 = require("mobx-react");
|
|
9
8
|
const util_1 = require("@jbrowse/core/util");
|
|
@@ -31,6 +30,3 @@ const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
|
|
|
31
30
|
react_1.default.createElement(YScaleBar_1.default, { model: model }))) : null));
|
|
32
31
|
});
|
|
33
32
|
exports.default = LinearWiggleDisplay;
|
|
34
|
-
var YScaleBar_2 = require("../../shared/YScaleBar");
|
|
35
|
-
Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_2).default; } });
|
|
36
|
-
//# sourceMappingURL=WiggleDisplayComponent.js.map
|
|
@@ -52,4 +52,3 @@ var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
|
|
|
52
52
|
Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_1).default; } });
|
|
53
53
|
var model_2 = require("./models/model");
|
|
54
54
|
Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
|
|
55
|
-
//# sourceMappingURL=index.js.map
|
|
@@ -12,7 +12,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
|
12
12
|
const { bpPerPx, sources, regions, features } = props;
|
|
13
13
|
const [region] = regions;
|
|
14
14
|
const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
|
|
15
|
-
const height = props.height /
|
|
15
|
+
const height = props.height / sources.length;
|
|
16
16
|
const width = (region.end - region.start) / bpPerPx;
|
|
17
17
|
let feats = [];
|
|
18
18
|
ctx.save();
|
|
@@ -39,4 +39,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
|
39
39
|
}
|
|
40
40
|
}
|
|
41
41
|
exports.default = MultiXYPlotRenderer;
|
|
42
|
-
//# sourceMappingURL=MultiDensityRenderer.js.map
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { WiggleDisplayModel } from '../models/model';
|
|
3
|
+
declare const ColorLegend: ({ model, rowHeight, labelWidth, exportSVG, }: {
|
|
4
|
+
model: WiggleDisplayModel;
|
|
5
|
+
rowHeight: number;
|
|
6
|
+
labelWidth: number;
|
|
7
|
+
exportSVG?: boolean | undefined;
|
|
8
|
+
}) => React.JSX.Element | null;
|
|
9
|
+
export default ColorLegend;
|
|
@@ -0,0 +1,28 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
const react_1 = __importDefault(require("react"));
|
|
7
|
+
const mobx_react_1 = require("mobx-react");
|
|
8
|
+
const RectBg_1 = __importDefault(require("./RectBg"));
|
|
9
|
+
const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
|
|
10
|
+
const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
|
|
11
|
+
const svgFontSize = Math.min(rowHeight, 12);
|
|
12
|
+
const canDisplayLabel = rowHeight > 11;
|
|
13
|
+
const colorBoxWidth = renderColorBoxes ? 15 : 0;
|
|
14
|
+
const legendWidth = labelWidth + colorBoxWidth + 5;
|
|
15
|
+
const svgOffset = exportSVG ? 10 : 0;
|
|
16
|
+
const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
|
|
17
|
+
return sources ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
18
|
+
/* 0.25 for hanging letters like g */
|
|
19
|
+
needsFullHeightScalebar ? (react_1.default.createElement(RectBg_1.default, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
|
|
20
|
+
sources.map((source, idx) => {
|
|
21
|
+
const boxHeight = Math.min(20, rowHeight);
|
|
22
|
+
return (react_1.default.createElement(react_1.default.Fragment, { key: `${source.name}-${idx}` },
|
|
23
|
+
needsFullHeightScalebar ? null : (react_1.default.createElement(RectBg_1.default, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })),
|
|
24
|
+
source.color ? (react_1.default.createElement(RectBg_1.default, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
|
|
25
|
+
canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
|
|
26
|
+
}))) : null;
|
|
27
|
+
});
|
|
28
|
+
exports.default = ColorLegend;
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
const react_1 = __importDefault(require("react"));
|
|
7
|
+
const RectBg = (props) => {
|
|
8
|
+
const { color = 'rgb(255,255,255,0.8)' } = props;
|
|
9
|
+
return react_1.default.createElement("rect", { ...props, fill: color });
|
|
10
|
+
};
|
|
11
|
+
exports.default = RectBg;
|
|
@@ -0,0 +1,22 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
const react_1 = __importDefault(require("react"));
|
|
7
|
+
const util_1 = require("@jbrowse/core/util");
|
|
8
|
+
const mobx_react_1 = require("mobx-react");
|
|
9
|
+
const RectBg_1 = __importDefault(require("./RectBg"));
|
|
10
|
+
const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
|
|
11
|
+
const { ticks, scaleType } = model;
|
|
12
|
+
const { width } = (0, util_1.getContainingView)(model);
|
|
13
|
+
const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
|
|
14
|
+
(scaleType === 'log' ? ' (log scale)' : '');
|
|
15
|
+
const len = (0, util_1.measureText)(legend, 14);
|
|
16
|
+
const padding = 25;
|
|
17
|
+
const xpos = width - len - padding;
|
|
18
|
+
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
19
|
+
react_1.default.createElement(RectBg_1.default, { y: 0, x: xpos, width: len + 6, height: 16 }),
|
|
20
|
+
react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
|
|
21
|
+
});
|
|
22
|
+
exports.default = ScoreLegend;
|
|
@@ -47,4 +47,3 @@ const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
|
|
|
47
47
|
exports.default = WiggleTooltip;
|
|
48
48
|
var Tooltip_2 = require("../../Tooltip");
|
|
49
49
|
Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
|
|
50
|
-
//# sourceMappingURL=Tooltip.js.map
|
|
@@ -1,10 +1,5 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { WiggleDisplayModel } from '../models/model';
|
|
3
|
-
export declare const StatBars: (props: {
|
|
4
|
-
model: WiggleDisplayModel;
|
|
5
|
-
orientation?: string;
|
|
6
|
-
exportSVG?: boolean;
|
|
7
|
-
}) => React.JSX.Element | null;
|
|
8
3
|
declare const _default: (props: {
|
|
9
4
|
model: WiggleDisplayModel;
|
|
10
5
|
}) => React.JSX.Element;
|
|
@@ -3,103 +3,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.YScaleBar =
|
|
6
|
+
exports.YScaleBar = void 0;
|
|
7
7
|
const react_1 = __importDefault(require("react"));
|
|
8
|
-
const util_1 = require("@jbrowse/core/util");
|
|
9
|
-
const configuration_1 = require("@jbrowse/core/configuration");
|
|
10
8
|
const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
|
|
11
9
|
const mobx_react_1 = require("mobx-react");
|
|
12
|
-
const
|
|
13
|
-
const trackLabelFontSize = 12.8;
|
|
14
|
-
function getOffset(model) {
|
|
15
|
-
const { prefersOffset } = model;
|
|
16
|
-
const { trackLabels } = (0, util_1.getContainingView)(model);
|
|
17
|
-
const track = (0, util_1.getContainingTrack)(model);
|
|
18
|
-
const trackName = (0, configuration_1.getConf)(track, 'name');
|
|
19
|
-
return trackLabels === 'overlapping' && !prefersOffset
|
|
20
|
-
? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
|
|
21
|
-
: 10;
|
|
22
|
-
}
|
|
23
|
-
const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
|
|
24
|
-
if (exportSVG) {
|
|
25
|
-
return react_1.default.createElement(react_1.default.Fragment, null, children);
|
|
26
|
-
}
|
|
27
|
-
else {
|
|
28
|
-
const { height } = model;
|
|
29
|
-
return (react_1.default.createElement("svg", { style: {
|
|
30
|
-
position: 'absolute',
|
|
31
|
-
top: 0,
|
|
32
|
-
left: 0,
|
|
33
|
-
pointerEvents: 'none',
|
|
34
|
-
height,
|
|
35
|
-
width: (0, util_1.getContainingView)(model).width,
|
|
36
|
-
} }, children));
|
|
37
|
-
}
|
|
38
|
-
});
|
|
39
|
-
const RectBg = (props) => {
|
|
40
|
-
const { color = 'rgb(255,255,255,0.8)' } = props;
|
|
41
|
-
return react_1.default.createElement("rect", { ...props, fill: color });
|
|
42
|
-
};
|
|
43
|
-
const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
|
|
44
|
-
const { ticks, scaleType } = model;
|
|
45
|
-
const { width } = (0, util_1.getContainingView)(model);
|
|
46
|
-
const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
|
|
47
|
-
(scaleType === 'log' ? ' (log scale)' : '');
|
|
48
|
-
const len = (0, util_1.measureText)(legend, 14);
|
|
49
|
-
const padding = 25;
|
|
50
|
-
const xpos = width - len - padding;
|
|
51
|
-
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
52
|
-
react_1.default.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
|
|
53
|
-
react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
|
|
54
|
-
});
|
|
55
|
-
const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
|
|
56
|
-
const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
|
|
57
|
-
const svgFontSize = Math.min(rowHeight, 12);
|
|
58
|
-
const canDisplayLabel = rowHeight > 11;
|
|
59
|
-
const colorBoxWidth = renderColorBoxes ? 15 : 0;
|
|
60
|
-
const legendWidth = labelWidth + colorBoxWidth + 5;
|
|
61
|
-
const svgOffset = exportSVG ? 10 : 0;
|
|
62
|
-
const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
|
|
63
|
-
return sources ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
64
|
-
/* 0.25 for hanging letters like g */
|
|
65
|
-
needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
|
|
66
|
-
sources.map((source, idx) => {
|
|
67
|
-
const boxHeight = Math.min(20, rowHeight);
|
|
68
|
-
return (react_1.default.createElement(react_1.default.Fragment, { key: `${source.name}-${idx}` },
|
|
69
|
-
needsFullHeightScalebar ? null : (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })),
|
|
70
|
-
source.color ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
|
|
71
|
-
canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
|
|
72
|
-
}))) : null;
|
|
73
|
-
});
|
|
74
|
-
exports.StatBars = (0, mobx_react_1.observer)(function (props) {
|
|
75
|
-
const { model, orientation, exportSVG } = props;
|
|
76
|
-
const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
|
|
77
|
-
const svgFontSize = Math.min(rowHeight, 12);
|
|
78
|
-
const canDisplayLabel = rowHeight > 11;
|
|
79
|
-
const { width: viewWidth } = (0, util_1.getContainingView)(model);
|
|
80
|
-
const minWidth = 20;
|
|
81
|
-
const ready = stats && sources;
|
|
82
|
-
if (!ready) {
|
|
83
|
-
return null;
|
|
84
|
-
}
|
|
85
|
-
const labelWidth = Math.max(...(sources
|
|
86
|
-
.map(s => (0, util_1.measureText)(s.name, svgFontSize))
|
|
87
|
-
.map(width => (canDisplayLabel ? width : minWidth)) || [0]));
|
|
88
|
-
return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
89
|
-
react_1.default.createElement("g", { transform: `translate(${!exportSVG ? getOffset(model) : 0},0)` },
|
|
90
|
-
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
|
|
91
|
-
react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
|
|
92
|
-
react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
|
|
93
|
-
react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
|
|
94
|
-
rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
|
|
95
|
-
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
|
|
96
|
-
});
|
|
10
|
+
const YScaleBars_1 = __importDefault(require("./YScaleBars"));
|
|
97
11
|
exports.default = (0, mobx_react_1.observer)((props) => {
|
|
98
12
|
const { model } = props;
|
|
99
13
|
return (react_1.default.createElement("div", null,
|
|
100
14
|
react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
|
|
101
|
-
react_1.default.createElement(
|
|
15
|
+
react_1.default.createElement(YScaleBars_1.default, { model: model })));
|
|
102
16
|
});
|
|
103
|
-
var
|
|
104
|
-
Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(
|
|
105
|
-
//# sourceMappingURL=WiggleDisplayComponent.js.map
|
|
17
|
+
var YScaleBar_1 = require("../../shared/YScaleBar");
|
|
18
|
+
Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_1).default; } });
|
|
@@ -0,0 +1,8 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { WiggleDisplayModel } from '../models/model';
|
|
3
|
+
export declare const YScaleBars: (props: {
|
|
4
|
+
model: WiggleDisplayModel;
|
|
5
|
+
orientation?: string;
|
|
6
|
+
exportSVG?: boolean;
|
|
7
|
+
}) => React.JSX.Element | null;
|
|
8
|
+
export default YScaleBars;
|
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.YScaleBars = void 0;
|
|
7
|
+
const react_1 = __importDefault(require("react"));
|
|
8
|
+
const util_1 = require("@jbrowse/core/util");
|
|
9
|
+
const mobx_react_1 = require("mobx-react");
|
|
10
|
+
const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
|
|
11
|
+
const ColorLegend_1 = __importDefault(require("./ColorLegend"));
|
|
12
|
+
const ScoreLegend_1 = __importDefault(require("./ScoreLegend"));
|
|
13
|
+
const util_2 = require("./util");
|
|
14
|
+
const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
|
|
15
|
+
if (exportSVG) {
|
|
16
|
+
return react_1.default.createElement(react_1.default.Fragment, null, children);
|
|
17
|
+
}
|
|
18
|
+
else {
|
|
19
|
+
const { height } = model;
|
|
20
|
+
return (react_1.default.createElement("svg", { style: {
|
|
21
|
+
position: 'absolute',
|
|
22
|
+
top: 0,
|
|
23
|
+
left: 0,
|
|
24
|
+
pointerEvents: 'none',
|
|
25
|
+
height,
|
|
26
|
+
width: (0, util_1.getContainingView)(model).width,
|
|
27
|
+
} }, children));
|
|
28
|
+
}
|
|
29
|
+
});
|
|
30
|
+
exports.YScaleBars = (0, mobx_react_1.observer)(function (props) {
|
|
31
|
+
const { model, orientation, exportSVG } = props;
|
|
32
|
+
const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
|
|
33
|
+
const svgFontSize = Math.min(rowHeight, 12);
|
|
34
|
+
const canDisplayLabel = rowHeight > 11;
|
|
35
|
+
const { width: viewWidth } = (0, util_1.getContainingView)(model);
|
|
36
|
+
const minWidth = 20;
|
|
37
|
+
const ready = stats && sources;
|
|
38
|
+
if (!ready) {
|
|
39
|
+
return null;
|
|
40
|
+
}
|
|
41
|
+
const labelWidth = Math.max(...(sources
|
|
42
|
+
.map(s => (0, util_1.measureText)(s.name, svgFontSize))
|
|
43
|
+
.map(width => (canDisplayLabel ? width : minWidth)) || [0]));
|
|
44
|
+
return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
45
|
+
react_1.default.createElement("g", { transform: `translate(${!exportSVG ? (0, util_2.getOffset)(model) : 0},0)` },
|
|
46
|
+
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
|
|
47
|
+
react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
|
|
48
|
+
react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
|
|
49
|
+
react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
|
|
50
|
+
rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend_1.default, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
|
|
51
|
+
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
|
|
52
|
+
});
|
|
53
|
+
exports.default = exports.YScaleBars;
|
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import { WiggleDisplayModel } from '../models/model';
|
|
1
2
|
export declare function moveUp(arr: {
|
|
2
3
|
name: string;
|
|
3
4
|
}[], sel: string[], by?: number): {
|
|
@@ -8,3 +9,4 @@ export declare function moveDown(arr: {
|
|
|
8
9
|
}[], sel: string[], by?: number): {
|
|
9
10
|
name: string;
|
|
10
11
|
}[];
|
|
12
|
+
export declare function getOffset(model: WiggleDisplayModel): number;
|
|
@@ -1,6 +1,8 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.moveDown = exports.moveUp = void 0;
|
|
3
|
+
exports.getOffset = exports.moveDown = exports.moveUp = void 0;
|
|
4
|
+
const util_1 = require("@jbrowse/core/util");
|
|
5
|
+
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
6
|
function moveUp(arr, sel, by = 1) {
|
|
5
7
|
const idxs = sel
|
|
6
8
|
.map(l => arr.findIndex(v => v.name === l))
|
|
@@ -33,4 +35,14 @@ function moveDown(arr, sel, by = 1) {
|
|
|
33
35
|
return arr;
|
|
34
36
|
}
|
|
35
37
|
exports.moveDown = moveDown;
|
|
36
|
-
|
|
38
|
+
const trackLabelFontSize = 12.8;
|
|
39
|
+
function getOffset(model) {
|
|
40
|
+
const { prefersOffset } = model;
|
|
41
|
+
const { trackLabels } = (0, util_1.getContainingView)(model);
|
|
42
|
+
const track = (0, util_1.getContainingTrack)(model);
|
|
43
|
+
const trackName = (0, configuration_1.getConf)(track, 'name');
|
|
44
|
+
return trackLabels === 'overlapping' && !prefersOffset
|
|
45
|
+
? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
|
|
46
|
+
: 10;
|
|
47
|
+
}
|
|
48
|
+
exports.getOffset = getOffset;
|
|
@@ -7,14 +7,13 @@ exports.renderSvg = void 0;
|
|
|
7
7
|
const react_1 = __importDefault(require("react"));
|
|
8
8
|
const util_1 = require("@jbrowse/core/util");
|
|
9
9
|
const mobx_1 = require("mobx");
|
|
10
|
-
const
|
|
10
|
+
const YScaleBars_1 = __importDefault(require("../components/YScaleBars"));
|
|
11
11
|
async function renderSvg(self, opts, superRenderSvg) {
|
|
12
12
|
await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
|
|
13
13
|
const { offsetPx } = (0, util_1.getContainingView)(self);
|
|
14
14
|
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
15
15
|
react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
|
|
16
16
|
react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
|
|
17
|
-
react_1.default.createElement(
|
|
17
|
+
react_1.default.createElement(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }))));
|
|
18
18
|
}
|
|
19
19
|
exports.renderSvg = renderSvg;
|
|
20
|
-
//# sourceMappingURL=renderSvg.js.map
|
|
@@ -12,7 +12,7 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
|
|
|
12
12
|
const { bpPerPx, sources, regions, features } = props;
|
|
13
13
|
const [region] = regions;
|
|
14
14
|
const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
|
|
15
|
-
const height = props.height /
|
|
15
|
+
const height = props.height / sources.length;
|
|
16
16
|
const width = (region.end - region.start) / bpPerPx;
|
|
17
17
|
let feats = [];
|
|
18
18
|
ctx.save();
|
|
@@ -36,4 +36,3 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
|
|
|
36
36
|
}
|
|
37
37
|
}
|
|
38
38
|
exports.default = MultiRowLineRenderer;
|
|
39
|
-
//# sourceMappingURL=MultiRowLineRenderer.js.map
|
|
@@ -35,7 +35,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
|
35
35
|
const { bpPerPx, sources, regions, features } = props;
|
|
36
36
|
const [region] = regions;
|
|
37
37
|
const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
|
|
38
|
-
const height = props.height /
|
|
38
|
+
const height = props.height / sources.length;
|
|
39
39
|
const width = (region.end - region.start) / bpPerPx;
|
|
40
40
|
const Color = await Promise.resolve().then(() => __importStar(require('color'))).then(f => f.default);
|
|
41
41
|
let feats = [];
|
|
@@ -65,4 +65,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
|
65
65
|
}
|
|
66
66
|
}
|
|
67
67
|
exports.default = MultiXYPlotRenderer;
|
|
68
|
-
//# sourceMappingURL=MultiRowXYPlotRenderer.js.map
|