@jbrowse/plugin-wiggle 2.3.4 → 2.4.1

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Files changed (177) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +5 -6
  2. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  3. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
  4. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -1
  5. package/dist/CreateMultiWiggleExtension/index.js +1 -3
  6. package/dist/CreateMultiWiggleExtension/index.js.map +1 -1
  7. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  8. package/dist/LinearWiggleDisplay/components/Tooltip.js +2 -1
  9. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  10. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -2
  11. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -2
  12. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  13. package/dist/LinearWiggleDisplay/index.d.ts +3 -4
  14. package/dist/LinearWiggleDisplay/index.js +7 -5
  15. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  16. package/dist/LinearWiggleDisplay/models/model.d.ts +99 -28
  17. package/dist/LinearWiggleDisplay/models/model.js +3 -8
  18. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  19. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +2 -2
  20. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  21. package/dist/MultiLineRenderer/MultiLineRenderer.js +2 -2
  22. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  23. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +1 -1
  24. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +1 -1
  25. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -4
  26. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  27. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  28. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +2 -1
  29. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -1
  30. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -4
  31. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +10 -10
  32. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  33. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +7 -0
  34. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  35. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +63 -5
  36. package/dist/MultiLinearWiggleDisplay/models/model.js +1 -7
  37. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  38. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +2 -2
  39. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  40. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +2 -2
  41. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  42. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +2 -1
  43. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
  44. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  45. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +2 -2
  46. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  47. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +5 -5
  48. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  49. package/dist/WiggleBaseRenderer.d.ts +2 -2
  50. package/dist/WiggleBaseRenderer.js +3 -3
  51. package/dist/WiggleBaseRenderer.js.map +1 -1
  52. package/dist/WiggleRPC/rpcMethods.js +2 -2
  53. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  54. package/dist/XYPlotRenderer/index.d.ts +3 -4
  55. package/dist/XYPlotRenderer/index.js +7 -4
  56. package/dist/XYPlotRenderer/index.js.map +1 -1
  57. package/dist/drawxy.js +4 -8
  58. package/dist/drawxy.js.map +1 -1
  59. package/dist/index.d.ts +73 -11
  60. package/dist/index.js +9 -7
  61. package/dist/index.js.map +1 -1
  62. package/dist/shared/YScaleBar.d.ts +9 -0
  63. package/dist/{MultiLinearWiggleDisplay/components → shared}/YScaleBar.js +4 -3
  64. package/dist/shared/YScaleBar.js.map +1 -0
  65. package/dist/util.d.ts +1 -1
  66. package/dist/util.js +6 -5
  67. package/dist/util.js.map +1 -1
  68. package/esm/BigWigAdapter/BigWigAdapter.js +5 -6
  69. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  70. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +1 -1
  71. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -1
  72. package/esm/CreateMultiWiggleExtension/index.js +1 -3
  73. package/esm/CreateMultiWiggleExtension/index.js.map +1 -1
  74. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  75. package/esm/LinearWiggleDisplay/components/Tooltip.js +1 -1
  76. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  77. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -2
  78. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
  79. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  80. package/esm/LinearWiggleDisplay/index.d.ts +3 -4
  81. package/esm/LinearWiggleDisplay/index.js +3 -2
  82. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  83. package/esm/LinearWiggleDisplay/models/model.d.ts +99 -28
  84. package/esm/LinearWiggleDisplay/models/model.js +2 -7
  85. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  86. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +2 -2
  87. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  88. package/esm/MultiLineRenderer/MultiLineRenderer.js +2 -2
  89. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  90. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +1 -1
  91. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +1 -1
  92. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -4
  93. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  94. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +2 -2
  95. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +1 -1
  96. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -1
  97. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -4
  98. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +9 -10
  99. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  100. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +7 -0
  101. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  102. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +63 -5
  103. package/esm/MultiLinearWiggleDisplay/models/model.js +1 -7
  104. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  105. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +2 -2
  106. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  107. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +2 -2
  108. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  109. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +2 -1
  110. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
  111. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  112. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +2 -2
  113. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  114. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +5 -5
  115. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  116. package/esm/WiggleBaseRenderer.d.ts +2 -2
  117. package/esm/WiggleBaseRenderer.js +3 -3
  118. package/esm/WiggleBaseRenderer.js.map +1 -1
  119. package/esm/WiggleRPC/rpcMethods.js +2 -2
  120. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  121. package/esm/XYPlotRenderer/index.d.ts +3 -4
  122. package/esm/XYPlotRenderer/index.js +3 -1
  123. package/esm/XYPlotRenderer/index.js.map +1 -1
  124. package/esm/drawxy.js +4 -8
  125. package/esm/drawxy.js.map +1 -1
  126. package/esm/index.d.ts +73 -11
  127. package/esm/index.js +4 -3
  128. package/esm/index.js.map +1 -1
  129. package/esm/shared/YScaleBar.d.ts +9 -0
  130. package/esm/{LinearWiggleDisplay/components → shared}/YScaleBar.js +4 -3
  131. package/esm/shared/YScaleBar.js.map +1 -0
  132. package/esm/util.d.ts +1 -1
  133. package/esm/util.js +6 -5
  134. package/esm/util.js.map +1 -1
  135. package/package.json +3 -3
  136. package/src/BigWigAdapter/BigWigAdapter.ts +5 -6
  137. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +1 -1
  138. package/src/CreateMultiWiggleExtension/index.ts +1 -3
  139. package/src/DensityRenderer/DensityRenderer.test.ts +3 -3
  140. package/src/LinearWiggleDisplay/components/Tooltip.tsx +2 -1
  141. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +2 -2
  142. package/src/LinearWiggleDisplay/index.ts +3 -2
  143. package/src/LinearWiggleDisplay/models/model.tsx +2 -6
  144. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +2 -2
  145. package/src/MultiLineRenderer/MultiLineRenderer.ts +2 -2
  146. package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +1 -1
  147. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +4 -4
  148. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +2 -1
  149. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +175 -182
  150. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +8 -0
  151. package/src/MultiLinearWiggleDisplay/models/model.tsx +1 -6
  152. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +2 -2
  153. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +2 -2
  154. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +3 -2
  155. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +2 -2
  156. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +5 -5
  157. package/src/WiggleBaseRenderer.tsx +13 -15
  158. package/src/WiggleRPC/rpcMethods.ts +2 -2
  159. package/src/WiggleRendering.test.js +1 -1
  160. package/src/XYPlotRenderer/XYPlotRenderer.test.ts +3 -3
  161. package/src/XYPlotRenderer/index.ts +4 -1
  162. package/src/drawxy.ts +6 -8
  163. package/src/index.ts +8 -9
  164. package/src/shared/YScaleBar.tsx +25 -0
  165. package/src/util.ts +5 -4
  166. package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +0 -7
  167. package/dist/LinearWiggleDisplay/components/YScaleBar.js +0 -14
  168. package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +0 -1
  169. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +0 -7
  170. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +0 -1
  171. package/esm/LinearWiggleDisplay/components/YScaleBar.d.ts +0 -7
  172. package/esm/LinearWiggleDisplay/components/YScaleBar.js.map +0 -1
  173. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +0 -7
  174. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +0 -9
  175. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +0 -1
  176. package/src/LinearWiggleDisplay/components/YScaleBar.tsx +0 -26
  177. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +0 -25
package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js CHANGED
@@ -85,7 +85,7 @@ exports.default = SetColorDialog;
85
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  function SourcesGrid({ rows, onChange, showTips, }) {
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  const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
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  const [selected, setSelected] = (0, react_1.useState)([]);
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- // @ts-ignore
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+ // @ts-expect-error
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  const { name: _name, color: _color, baseUri: _baseUri, ...rest } = rows[0];
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  // similar to BaseFeatureDetail data-grid for auto-measuring columns
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  const columns = [
@@ -116,7 +116,7 @@ function SourcesGrid({ rows, onChange, showTips, }) {
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  const { value } = params;
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  return (0, util_1.isUriLocation)(value) ? react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value }) : (0, util_1.getStr)(value);
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  },
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- // @ts-ignore
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+ // @ts-expect-error
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  width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
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  })),
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  ];
@@ -158,9 +158,9 @@ function SourcesGrid({ rows, onChange, showTips, }) {
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  setCurrSort({ idx, field });
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  onChange(field
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  ? [...rows].sort((a, b) => {
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- // @ts-ignore
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+ // @ts-expect-error
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  const aa = (0, util_1.getStr)(a[field]);
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- // @ts-ignore
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+ // @ts-expect-error
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  const bb = (0, util_1.getStr)(b[field]);
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  return idx === 1
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  ? aa.localeCompare(bb)
package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  import React from 'react';
2
2
  import { Feature } from '@jbrowse/core/util';
3
3
  import { Source } from '../../util';
4
- import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
4
+ import { TooltipContentsComponent } from '../../Tooltip';
5
5
  declare const TooltipContents: React.ForwardRefExoticComponent<{
6
6
  model: {
7
7
  sources: Source[];
@@ -22,4 +22,4 @@ declare const WiggleTooltip: (props: {
22
22
  TooltipContents?: TooltipContentsComponent;
23
23
  }) => JSX.Element;
24
24
  export default WiggleTooltip;
25
- export { Tooltip };
25
+ export { default as Tooltip } from '../../Tooltip';
package/dist/MultiLinearWiggleDisplay/components/Tooltip.js CHANGED
@@ -9,7 +9,6 @@ const mobx_react_1 = require("mobx-react");
9
9
  // locals
10
10
  const util_1 = require("../../util");
11
11
  const Tooltip_1 = __importDefault(require("../../Tooltip"));
12
- exports.Tooltip = Tooltip_1.default;
13
12
  const en = (n) => n.toLocaleString('en-US');
14
13
  const TooltipContents = react_1.default.forwardRef(({ model, feature }, ref) => {
15
14
  const start = feature.get('start');
@@ -46,4 +45,6 @@ const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
46
45
  return react_1.default.createElement(Tooltip_1.default, { useClientY: true, TooltipContents: TooltipContents, ...props });
47
46
  });
48
47
  exports.default = WiggleTooltip;
48
+ var Tooltip_2 = require("../../Tooltip");
49
+ Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
49
50
  //# sourceMappingURL=Tooltip.js.map
package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map CHANGED
@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts CHANGED
@@ -1,13 +1,12 @@
1
1
  /// <reference types="react" />
2
2
  import { WiggleDisplayModel } from '../models/model';
3
- import YScaleBar from './YScaleBar';
4
3
  export declare const StatBars: (props: {
5
4
  model: WiggleDisplayModel;
6
5
  orientation?: string;
7
6
  exportSVG?: boolean;
8
7
  }) => JSX.Element | null;
9
- declare const LinearWiggleDisplay: (props: {
8
+ declare const _default: (props: {
10
9
  model: WiggleDisplayModel;
11
10
  }) => JSX.Element;
12
- export default LinearWiggleDisplay;
13
- export { YScaleBar };
11
+ export default _default;
12
+ export { default as YScaleBar } from '../../shared/YScaleBar';
package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED
@@ -9,8 +9,7 @@ const util_1 = require("@jbrowse/core/util");
9
9
  const configuration_1 = require("@jbrowse/core/configuration");
10
10
  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
11
11
  const mobx_react_1 = require("mobx-react");
12
- const YScaleBar_1 = __importDefault(require("./YScaleBar"));
13
- exports.YScaleBar = YScaleBar_1.default;
12
+ const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
14
13
  const trackLabelFontSize = 12.8;
15
14
  function getOffset(model) {
16
15
  const { prefersOffset } = model;
@@ -21,7 +20,7 @@ function getOffset(model) {
21
20
  ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
22
21
  : 10;
23
22
  }
24
- const Wrapper = (0, mobx_react_1.observer)(({ children, model, exportSVG, }) => {
23
+ const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
25
24
  if (exportSVG) {
26
25
  return react_1.default.createElement(react_1.default.Fragment, null, children);
27
26
  }
@@ -53,7 +52,7 @@ const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
53
52
  react_1.default.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
54
53
  react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
55
54
  });
56
- const ColorLegend = (0, mobx_react_1.observer)(({ model, rowHeight, labelWidth, exportSVG, }) => {
55
+ const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
57
56
  const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
58
57
  const svgFontSize = Math.min(rowHeight, 12);
59
58
  const canDisplayLabel = rowHeight > 11;
@@ -66,13 +65,13 @@ const ColorLegend = (0, mobx_react_1.observer)(({ model, rowHeight, labelWidth,
66
65
  needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
67
66
  sources.map((source, idx) => {
68
67
  const boxHeight = Math.min(20, rowHeight);
69
- return (react_1.default.createElement(react_1.default.Fragment, { key: source.name + '-' + idx },
70
- !needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })) : null,
68
+ return (react_1.default.createElement(react_1.default.Fragment, { key: `${source.name}-${idx}` },
69
+ needsFullHeightScalebar ? null : (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })),
71
70
  source.color ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
72
71
  canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
73
72
  }))) : null;
74
73
  });
75
- exports.StatBars = (0, mobx_react_1.observer)((props) => {
74
+ exports.StatBars = (0, mobx_react_1.observer)(function (props) {
76
75
  const { model, orientation, exportSVG } = props;
77
76
  const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
78
77
  const svgFontSize = Math.min(rowHeight, 12);
@@ -92,14 +91,15 @@ exports.StatBars = (0, mobx_react_1.observer)((props) => {
92
91
  react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
93
92
  react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
94
93
  react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
95
- rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: JSON.stringify(ticks) + '-' + idx },
94
+ rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
96
95
  react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
97
96
  });
98
- const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
97
+ exports.default = (0, mobx_react_1.observer)((props) => {
99
98
  const { model } = props;
100
99
  return (react_1.default.createElement("div", null,
101
100
  react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
102
101
  react_1.default.createElement(exports.StatBars, { model: model })));
103
102
  });
104
- exports.default = LinearWiggleDisplay;
103
+ var YScaleBar_2 = require("../../shared/YScaleBar");
104
+ Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_2).default; } });
105
105
  //# sourceMappingURL=WiggleDisplayComponent.js.map
package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED
@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/models/configSchema.js CHANGED
@@ -102,6 +102,13 @@ function WiggleConfigFactory(pluginManager) {
102
102
  MultiLineRenderer: MultiLineRendererConfigSchema,
103
103
  MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
104
104
  }),
105
+ /**
106
+ * #slot
107
+ */
108
+ height: {
109
+ type: 'number',
110
+ defaultValue: 200,
111
+ },
105
112
  }, {
106
113
  /**
107
114
  * #baseConfiguration
package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,kFAAkF;AAClF,qDAAuC;AAGvC;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,SAAwB,mBAAmB,CAAC,aAA4B;IACtE,MAAM,+BAA+B,GAAG,aAAa,CAAC,eAAe,CACnE,qBAAqB,CACtB,CAAC,YAAY,CAAA;IACd,MAAM,gCAAgC,GAAG,aAAa,CAAC,eAAe,CACpE,sBAAsB,CACvB,CAAC,YAAY,CAAA;IACd,MAAM,kCAAkC,GAAG,aAAa,CAAC,eAAe,CACtE,wBAAwB,CACzB,CAAC,YAAY,CAAA;IACd,MAAM,6BAA6B,GACjC,aAAa,CAAC,eAAe,CAAC,mBAAmB,CAAC,CAAC,YAAY,CAAA;IACjE,MAAM,gCAAgC,GAAG,aAAa,CAAC,eAAe,CACpE,sBAAsB,CACvB,CAAC,YAAY,CAAA;IAEd,OAAO,IAAA,mCAAmB,EACxB,0BAA0B,EAC1B;QACE;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,YAAY,EAAE,OAAO;YACrB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,gBAAgB,EAAE;gBACzC,QAAQ;gBACR,OAAO;gBACP,UAAU;gBACV,SAAS;gBACT,QAAQ;aACT,CAAC;YACF,WAAW,EACT,sFAAsF;SACzF;QAED;;WAEG;QACH,YAAY,EAAE;YACZ,IAAI,EAAE,SAAS;YACf,YAAY,EAAE,KAAK;YACnB,WAAW,EAAE,iCAAiC;SAC/C;QAED;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,MAAM,CAAC,SAAS;YAC9B,WAAW,EAAE,+BAA+B;SAC7C;QACD;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,WAAW,EAAE,+BAA+B;YAC5C,YAAY,EAAE,MAAM,CAAC,SAAS;SAC/B;QACD;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,QAAQ;YACd,WAAW,EACT,8EAA8E;YAChF,YAAY,EAAE,CAAC;SAChB;QACD;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YACzD,WAAW,EAAE,0BAA0B;YACvC,YAAY,EAAE,QAAQ;SACvB;QAED;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,SAAS;YACf,WAAW,EAAE,kBAAkB;YAC/B,YAAY,EAAE,KAAK;SACpB;QAED;;WAEG;QACH,gBAAgB,EAAE;YAChB,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,WAAW,EAAE;gBACpC,YAAY;gBACZ,QAAQ;gBACR,iBAAiB;gBACjB,WAAW;gBACX,cAAc;aACf,CAAC;YACF,YAAY,EAAE,YAAY;SAC3B;QAED;;WAEG;QACH,SAAS,EAAE,IAAA,mCAAmB,EAAC,wBAAwB,EAAE;YACvD,mBAAmB,EAAE,+BAA+B;YACpD,oBAAoB,EAAE,gCAAgC;YACtD,sBAAsB,EAAE,kCAAkC;YAC1D,iBAAiB,EAAE,6BAA6B;YAChD,oBAAoB,EAAE,gCAAgC;SACvD,CAAC;KACH,EACD;QACE;;WAEG;QACH,iBAAiB,EAAE,yDAA6B;QAChD,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AA3HD,sCA2HC"}
1
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package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -13,7 +13,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
13
13
  type: import("mobx-state-tree").ISimpleType<string>;
14
14
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
15
15
  } & {
16
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
16
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
17
17
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
18
18
  key: import("mobx-state-tree").ISimpleType<string>;
19
19
  region: import("mobx-state-tree").IModelType<{
@@ -69,7 +69,6 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
69
69
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
70
70
  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
71
71
  minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
72
- height: import("mobx-state-tree").IType<number | undefined, number, number>;
73
72
  color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
74
73
  posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
74
  negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -144,6 +143,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
144
143
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
145
144
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
146
145
  } & {
146
+ readonly height: number;
147
147
  readonly blockType: "dynamicBlocks" | "staticBlocks";
148
148
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
149
149
  } & {
@@ -206,6 +206,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
206
206
  } & {
207
207
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
208
208
  overrideHeight: number;
209
+ theme: import("@mui/material").ThemeOptions;
209
210
  }): Promise<JSX.Element>;
210
211
  } & {
211
212
  message: string | undefined;
@@ -303,7 +304,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
303
304
  renderProps(): any;
304
305
  readonly hasResolution: boolean;
305
306
  readonly hasGlobalStats: boolean;
306
- readonly fillSetting: 1 | 2 | 0;
307
+ readonly fillSetting: 2 | 0 | 1;
307
308
  } & {
308
309
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
309
310
  label: string;
@@ -328,12 +329,69 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
328
329
  afterAttach(): void;
329
330
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
330
331
  overrideHeight: number;
332
+ theme: import("@mui/material").ThemeOptions;
331
333
  }): Promise<JSX.Element>;
332
- }, import("mobx-state-tree")._NotCustomized, {
334
+ }, {
335
+ type: string;
336
+ } & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
337
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
338
+ type: import("mobx-state-tree").ISimpleType<string>;
339
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
340
+ } & {
341
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
342
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
343
+ key: import("mobx-state-tree").ISimpleType<string>;
344
+ region: import("mobx-state-tree").IModelType<{
345
+ refName: import("mobx-state-tree").ISimpleType<string>;
346
+ start: import("mobx-state-tree").ISimpleType<number>;
347
+ end: import("mobx-state-tree").ISimpleType<number>;
348
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
349
+ } & {
350
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
351
+ }, {
352
+ setRefName(newRefName: string): void;
353
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
354
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
355
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
356
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
357
+ }, {
358
+ renderInProgress: AbortController | undefined;
359
+ filled: boolean;
360
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
361
+ features: Map<string, Feature> | undefined;
362
+ layout: any;
363
+ status: string;
364
+ error: unknown;
365
+ message: string | undefined;
366
+ maxHeightReached: boolean;
367
+ ReactComponent: ({ model, }: {
368
+ model: any;
369
+ }) => any;
370
+ renderProps: any;
371
+ } & {
372
+ doReload(): void;
373
+ afterAttach(): void;
374
+ setStatus(message: string): void;
375
+ setLoading(abortController: AbortController): void;
376
+ setMessage(messageText: string): void;
377
+ setRendered(props: {
378
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
379
+ features: Map<string, Feature>;
380
+ layout: any;
381
+ maxHeightReached: boolean;
382
+ renderProps: any;
383
+ } | undefined): void;
384
+ setError(error: unknown): void;
385
+ reload(): void;
386
+ beforeDestroy(): void;
387
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
388
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
389
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
390
+ }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
333
391
  type: string;
334
- height: number;
335
392
  id: string;
336
393
  rpcDriverName: string | undefined;
394
+ heightPreConfig: number | undefined;
337
395
  userBpPerPxLimit: number | undefined;
338
396
  userByteSizeLimit: number | undefined;
339
397
  } & import("mobx-state-tree")._NotCustomized>;
package/dist/MultiLinearWiggleDisplay/models/model.js CHANGED
@@ -61,7 +61,6 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
61
61
  resolution: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, 1),
62
62
  fill: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
63
63
  minSize: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
64
- height: 200,
65
64
  color: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
66
65
  posColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
67
66
  negColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
@@ -153,12 +152,7 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
153
152
  }
154
153
  },
155
154
  toggleLogScale() {
156
- if (self.scale !== 'log') {
157
- self.scale = 'log';
158
- }
159
- else {
160
- self.scale = 'linear';
161
- }
155
+ self.scale = self.scale === 'log' ? 'linear' : 'log';
162
156
  },
163
157
  setScaleType(scale) {
164
158
  self.scale = scale;
package/dist/MultiLinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
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1
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package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js CHANGED
@@ -7,7 +7,7 @@ const util_1 = require("../util");
7
7
  const drawxy_1 = require("../drawxy");
8
8
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
9
9
  class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
10
- // @ts-ignore
10
+ // @ts-expect-error
11
11
  async draw(ctx, props) {
12
12
  const { bpPerPx, sources, regions, features } = props;
13
13
  const [region] = regions;
@@ -29,7 +29,7 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
29
29
  ctx.lineTo(width, height);
30
30
  ctx.stroke();
31
31
  ctx.translate(0, height);
32
- feats = feats.concat(reducedFeatures);
32
+ feats = [...feats, ...reducedFeatures];
33
33
  });
34
34
  ctx.restore();
35
35
  return { reducedFeatures: feats };
package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"MultiRowLineRenderer.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/MultiRowLineRenderer.ts"],"names":[],"mappings":";;;;;AACA,kCAAiC;AACjC,sCAAoC;AACpC,+EAE8B;AAE9B,MAAqB,oBAAqB,SAAQ,4BAAkB;IAClE,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;gBAC7B,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AA5BD,uCA4BC"}
1
+ {"version":3,"file":"MultiRowLineRenderer.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/MultiRowLineRenderer.ts"],"names":[],"mappings":";;;;;AACA,kCAAiC;AACjC,sCAAoC;AACpC,+EAE8B;AAE9B,MAAqB,oBAAqB,SAAQ,4BAAkB;IAClE,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;gBAC7B,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;QACxC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AA5BD,uCA4BC"}
package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js CHANGED
@@ -30,7 +30,7 @@ const util_1 = require("../util");
30
30
  const drawxy_1 = require("../drawxy");
31
31
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
32
32
  class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
33
- // @ts-ignore
33
+ // @ts-expect-error
34
34
  async draw(ctx, props) {
35
35
  const { bpPerPx, sources, regions, features } = props;
36
36
  const [region] = regions;
@@ -58,7 +58,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
58
58
  ctx.lineTo(width, height);
59
59
  ctx.stroke();
60
60
  ctx.translate(0, height);
61
- feats = feats.concat(reducedFeatures);
61
+ feats = [...feats, ...reducedFeatures];
62
62
  });
63
63
  ctx.restore();
64
64
  return { reducedFeatures: feats };
package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"MultiRowXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kCAAiC;AACjC,sCAAkC;AAElC,+EAE8B;AAE9B,MAAqB,mBAAoB,SAAQ,4BAAkB;IACjE,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,kDAAO,OAAO,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACxD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,eAAM,EAAC,GAAG,EAAE;gBACtC,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;gBAC3C,KAAK;aACN,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;QACxC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AAlCD,sCAkCC"}
package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts CHANGED
@@ -6,6 +6,7 @@ interface WiggleOptions extends BaseOptions {
6
6
  }
7
7
  interface AdapterEntry {
8
8
  dataAdapter: BaseFeatureDataAdapter;
9
+ source: string;
9
10
  [key: string]: unknown;
10
11
  }
11
12
  export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
@@ -21,7 +22,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
21
22
  featureDensity: number;
22
23
  }>;
23
24
  getSources(): Promise<{
24
- name: unknown;
25
+ name: string;
25
26
  __name: unknown;
26
27
  }[]>;
27
28
  freeResources(): void;
package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js CHANGED
@@ -47,7 +47,7 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
47
47
  async getGlobalStats(opts) {
48
48
  const adapters = await this.getAdapters();
49
49
  const stats = (await Promise.all(
50
- // @ts-ignore
50
+ // @ts-expect-error
51
51
  adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
52
52
  const scoreMin = (0, util_1.min)(stats.map(s => s.scoreMin));
53
53
  const scoreMax = (0, util_1.max)(stats.map(s => s.scoreMax));
@@ -62,7 +62,7 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
62
62
  ? p
63
63
  : new util_1.SimpleFeature({
64
64
  ...p.toJSON(),
65
- uniqueId: adp.source + '-' + p.id(),
65
+ uniqueId: `${adp.source}-${p.id()}`,
66
66
  source: adp.source,
67
67
  }))))).subscribe(observer);
68
68
  }, opts.signal);
package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":";;AAAA,yEAGgD;AAEhD,kDAA0D;AAC1D,6CAAqE;AACrE,+BAA4B;AAC5B,8CAAoC;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAOD,MAAqB,kBAAmB,SAAQ,oCAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,aAAa;QACb,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,IAAA,UAAG,EAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,IAAA,UAAG,EAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,IAAA,YAAK,EACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,IAAA,eAAG,EAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,oBAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAlGjC,qCAmGC;AAlGe,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
1
+ {"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":";;AAAA,yEAGgD;AAEhD,kDAA0D;AAC1D,6CAAqE;AACrE,+BAA4B;AAC5B,8CAAoC;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAQD,MAAqB,kBAAmB,SAAQ,oCAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,mBAAmB;QACnB,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,IAAA,UAAG,EAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,IAAA,UAAG,EAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,IAAA,YAAK,EACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,IAAA,eAAG,EAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,oBAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAlGjC,qCAmGC;AAlGe,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js CHANGED
@@ -45,7 +45,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
45
45
  function MultiWiggleWidget({ model }) {
46
46
  const { classes } = useStyles();
47
47
  const [val, setVal] = (0, react_1.useState)('');
48
- const [trackName, setTrackName] = (0, react_1.useState)('MultiWiggle ' + Date.now());
48
+ const [trackName, setTrackName] = (0, react_1.useState)(`MultiWiggle${+Date.now()}`);
49
49
  return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
50
50
  react_1.default.createElement("ul", null,
51
51
  react_1.default.createElement("li", null, "Enter list of URLs for bigwig files in the textbox"),
@@ -54,7 +54,7 @@ function MultiWiggleWidget({ model }) {
54
54
  react_1.default.createElement(material_1.Button, { variant: "outlined", component: "label" },
55
55
  "Choose Files from your computer",
56
56
  react_1.default.createElement("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
57
- const res = Array.from((target === null || target === void 0 ? void 0 : target.files) || []).map(file => ({
57
+ const res = [...((target === null || target === void 0 ? void 0 : target.files) || [])].map(file => ({
58
58
  type: 'BigWigAdapter',
59
59
  bigWigLocation: util_1.isElectron
60
60
  ? {