@jbrowse/plugin-wiggle 2.3.4 → 2.4.1

package/dist/BigWigAdapter/BigWigAdapter.js

@@ -48,21 +48,20 @@ class BigWigAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
                 ...opts,
                 basesPerSpan: bpPerPx / resolution,
             });
-            for (let i = 0; i < feats.length; i++) {
-                const data = feats[i];
+            for (const data of feats) {
                 if (source) {
-                    // @ts-ignore
+                    // @ts-expect-error
                     data.source = source;
                 }
                 const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`;
-                // @ts-ignore
+                // @ts-expect-error
                 data.refName = refName;
                 data.uniqueId = uniqueId;
                 observer.next({
-                    // @ts-ignore
+                    // @ts-expect-error
                     get: (str) => data[str],
                     id: () => uniqueId,
-                    // @ts-ignore
+                    // @ts-expect-error
                     toJSON: () => data,
                 });
             }

package/dist/BigWigAdapter/BigWigAdapter.js.map

@@ -1 +1 @@
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+{"version":3,"file":"BigWigAdapter.js","sourceRoot":"","sources":["../../src/BigWigAdapter/BigWigAdapter.ts"],"names":[],"mappings":";;AAAA,mCAAkC;AAClC,yEAGgD;AAEhD,8CAAoD;AACpD,6CAA0D;AAC1D,kDAA0D;AAC1D,oDAAgF;AAMhF,MAAqB,aAAc,SAAQ,oCAAsB;IAUvD,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,MAAM,GAAG,IAAI,YAAM,CAAC;YACxB,UAAU,EAAE,IAAA,iBAAY,EACtB,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,EAC9B,IAAI,CAAC,aAAa,CACnB;SACF,CAAC,CAAA;QACF,MAAM,MAAM,GAAG,MAAM,IAAA,mBAAY,EAC/B,2BAA2B,EAC3B,cAAc,EACd,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,CAC7B,CAAA;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACvC,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,KAAa;;QACpC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,OAAO,MAAA,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,0CAAE,IAAI,CAAA;IACzC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,IAAA,oBAAY,EAAC,MAAM,CAAC,YAAuC,CAAC,CAAA;IACrE,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QACtC,MAAM,EACJ,OAAO,GAAG,CAAC,EACX,MAAM,EACN,UAAU,GAAG,CAAC,EACd,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,IAAI,CAAA;QACR,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,cAAc,CAAC,yBAAyB,CAAC,CAAA;YACzC,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;YACrC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACzC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBAC1D,GAAG,IAAI;gBACP,YAAY,EAAE,OAAO,GAAG,UAAU;aACnC,CAAC,CAAA;YAEF,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE;gBACxB,IAAI,MAAM,EAAE;oBACV,mBAAmB;oBACnB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;iBACrB;gBACD,MAAM,QAAQ,GAAG,GAAG,MAAM,IAAI,MAAM,CAAC,OAAO,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;gBACxE,mBAAmB;gBACnB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;gBACtB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;gBACxB,QAAQ,CAAC,IAAI,CAAC;oBACZ,mBAAmB;oBACnB,GAAG,EAAE,CAAC,GAAW,EAAE,EAAE,CAAE,IAAgC,CAAC,GAAG,CAAC;oBAC5D,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ;oBAClB,mBAAmB;oBACnB,MAAM,EAAE,GAAG,EAAE,CAAC,IAAI;iBACnB,CAAC,CAAA;aACH;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAEM,aAAa,KAAU,CAAC;;AA9FjC,gCA+FC;AA3Fe,0BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js

@@ -31,7 +31,7 @@ const material_1 = require("@mui/material");
 const Dialog_1 = __importDefault(require("@jbrowse/core/ui/Dialog"));
 const configuration_1 = require("@jbrowse/core/configuration");
 const ConfirmDialog = ({ tracks, onClose, }) => {
-    const [val, setVal] = (0, react_1.useState)('MultiWiggle ' + Date.now());
+    const [val, setVal] = (0, react_1.useState)(`MultiWiggle ${Date.now()}`);
     const allQuant = tracks.every(t => t.type === 'QuantitativeTrack');
     return (react_1.default.createElement(Dialog_1.default, { open: true, onClose: () => onClose(false), title: "Confirm multi-wiggle track create" },
         react_1.default.createElement(material_1.DialogContent, null,

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAMsB;AACtB,qEAA4C;AAC5C,+DAGoC;AAEpC,MAAM,aAAa,GAAG,CAAC,EACrB,MAAM,EACN,OAAO,GAIR,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,CAAA;IAC3D,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,mBAAmB,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,gBAAM,IACL,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAC7B,KAAK,EAAC,mCAAmC;QAEzC,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}
+{"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAMsB;AACtB,qEAA4C;AAC5C,+DAGoC;AAEpC,MAAM,aAAa,GAAG,CAAC,EACrB,MAAM,EACN,OAAO,GAIR,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,eAAe,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;IAC3D,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,mBAAmB,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,gBAAM,IACL,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAC7B,KAAK,EAAC,mCAAmC;QAEzC,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}

package/dist/CreateMultiWiggleExtension/index.js

@@ -44,9 +44,7 @@ function default_1(pm) {
                                     .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
                                     .map((c, idx) => ({ ...c, source: trackIds[idx] }));
                                 const assemblyNames = [
-                                    ...new Set(tracks
-                                        .map(c => (0, configuration_1.readConfObject)(c, 'assemblyNames'))
-                                        .flat()),
+                                    ...new Set(tracks.flatMap(c => (0, configuration_1.readConfObject)(c, 'assemblyNames'))),
                                 ];
                                 const now = +Date.now();
                                 const trackId = `multitrack-${now}-sessionTrack`;

package/dist/CreateMultiWiggleExtension/index.js.map

@@ -1 +1 @@
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package/dist/LinearWiggleDisplay/components/Tooltip.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { Feature } from '@jbrowse/core/util';
-import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
+import { TooltipContentsComponent } from '../../Tooltip';
 interface Props {
     feature: Feature;
 }
@@ -17,4 +17,4 @@ declare const WiggleTooltip: (props: {
     TooltipContents?: TooltipContentsComponent;
 }) => JSX.Element;
 export default WiggleTooltip;
-export { Tooltip };
+export { default as Tooltip } from '../../Tooltip';

package/dist/LinearWiggleDisplay/components/Tooltip.js

@@ -8,7 +8,6 @@ const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 // locals
 const Tooltip_1 = __importDefault(require("../../Tooltip"));
-exports.Tooltip = Tooltip_1.default;
 const util_1 = require("../../util");
 const en = (n) => n.toLocaleString('en-US');
 const TooltipContents = react_1.default.forwardRef(function ({ feature }, ref) {
@@ -37,4 +36,6 @@ const WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
     return react_1.default.createElement(Tooltip_1.default, { TooltipContents: TooltipContents, ...props });
 });
 exports.default = WiggleTooltip;
+var Tooltip_2 = require("../../Tooltip");
+Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_2).default; } });
 //# sourceMappingURL=Tooltip.js.map

package/dist/LinearWiggleDisplay/components/Tooltip.js.map

@@ -1 +1 @@
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package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,8 +1,7 @@
 /// <reference types="react" />
 import { WiggleDisplayModel } from '../models/model';
-import YScaleBar from './YScaleBar';
 declare const LinearWiggleDisplay: (props: {
     model: WiggleDisplayModel;
 }) => JSX.Element;
 export default LinearWiggleDisplay;
-export { YScaleBar };
+export { default as YScaleBar } from '../../shared/YScaleBar';

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -9,8 +9,7 @@ const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const YScaleBar_1 = __importDefault(require("./YScaleBar"));
-exports.YScaleBar = YScaleBar_1.default;
+const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
 const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
     const { model } = props;
     const { stats, height, needsScalebar } = model;
@@ -32,4 +31,6 @@ const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
             react_1.default.createElement(YScaleBar_1.default, { model: model }))) : null));
 });
 exports.default = LinearWiggleDisplay;
+var YScaleBar_2 = require("../../shared/YScaleBar");
+Object.defineProperty(exports, "YScaleBar", { enumerable: true, get: function () { return __importDefault(YScaleBar_2).default; } });
 //# sourceMappingURL=WiggleDisplayComponent.js.map

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAI3C,uEAA8C;AAI9C,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA;AAElC,oDAA6D;AAApD,uHAAA,OAAO,OAAa"}

package/dist/LinearWiggleDisplay/index.d.ts

@@ -1,7 +1,6 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import modelFactory from './models/model';
-import ReactComponent from './components/WiggleDisplayComponent';
-import Tooltip from './components/Tooltip';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { ReactComponent, modelFactory, Tooltip };
+export { default as Tooltip } from './components/Tooltip';
+export { default as ReactComponent } from './components/WiggleDisplayComponent';
+export { default as modelFactory } from './models/model';

package/dist/LinearWiggleDisplay/index.js

@@ -3,15 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Tooltip = exports.modelFactory = exports.ReactComponent = void 0;
+exports.modelFactory = exports.ReactComponent = exports.Tooltip = void 0;
 const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
 const configSchema_1 = __importDefault(require("./models/configSchema"));
 const model_1 = __importDefault(require("./models/model"));
-exports.modelFactory = model_1.default;
 const WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
-exports.ReactComponent = WiggleDisplayComponent_1.default;
-const Tooltip_1 = __importDefault(require("./components/Tooltip"));
-exports.Tooltip = Tooltip_1.default;
 exports.default = (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
@@ -27,4 +23,10 @@ exports.default = (pluginManager) => {
         });
     });
 };
+var Tooltip_1 = require("./components/Tooltip");
+Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
+var WiggleDisplayComponent_2 = require("./components/WiggleDisplayComponent");
+Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_2).default; } });
+var model_2 = require("./models/model");
+Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
 //# sourceMappingURL=index.js.map

package/dist/LinearWiggleDisplay/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iGAAgE;AAEhE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,WAAW,EAAE,gBAAgB;YAC7B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,gDAAyD;AAAhD,mHAAA,OAAO,OAAW;AAC3B,8EAA+E;AAAtE,yIAAA,OAAO,OAAkB;AAClC,wCAAwD;AAA/C,sHAAA,OAAO,OAAgB"}

package/dist/LinearWiggleDisplay/models/model.d.ts

@@ -12,22 +12,20 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; /**
-     * #property
-     */
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
             start: import("mobx-state-tree").ISimpleType<number>;
             end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
         } & {
             assemblyName: import("mobx-state-tree").ISimpleType<string>;
         }, {
-            setRefName(newRefName: string): void; /**
-             * #property
-             */
+            setRefName(newRefName: string): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -43,11 +41,15 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
-            model: any;
+            model: any; /**
+             * #property
+             */
         }) => any;
         renderProps: any;
     } & {
-        doReload(): void;
+        doReload(): void; /**
+         * #property
+         */
         afterAttach(): void;
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
@@ -158,14 +160,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            /**
-             * #property
-             */
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
+            type: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             */
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -175,13 +176,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; /**
-     * #action
-     */
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): undefined; /**
+     * #action
+     */
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
@@ -195,26 +196,34 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
     readonly TooltipComponent: React.FC<any>;
     readonly selectedFeatureId: string | undefined;
-    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    readonly DisplayMessageComponent: React.FC<any> | undefined; /**
+     * #action
+     */
 } & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>; /**
+     * #action
+     */
     readonly featureUnderMouse: Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): any; /**
+     * #action
+     */
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
     readonly maxFeatureScreenDensity: any;
-    readonly estimatedStatsReady: boolean;
-    readonly maxAllowableBytes: number; /**
+    /**
      * #getter
      */
+    readonly estimatedStatsReady: boolean;
+    readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
     afterAttach(): void;
@@ -237,9 +246,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
     reload(): void;
-    setContextMenuFeature(feature?: Feature | undefined): void; /**
-     * #method
-     */
+    setContextMenuFeature(feature?: Feature | undefined): void;
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
@@ -261,6 +268,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
 } & {
     message: string | undefined;
@@ -459,7 +467,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly fillSetting: 1 | 2 | 0;
+    readonly fillSetting: 2 | 0 | 1;
 } & {
     /**
      * #method
@@ -494,12 +502,75 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
      */
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
-}, import("mobx-state-tree")._NotCustomized, {
+}, {
+    type: string;
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any; /**
+             * #property
+             */
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void; /**
+         * #property
+         */
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearWiggleDisplay/models/model.js

@@ -35,7 +35,7 @@ const mobx_state_tree_1 = require("mobx-state-tree");
 const react_d3_axis_mod_1 = require("react-d3-axis-mod");
 const util_2 = require("../../util");
 const Tooltip_1 = __importDefault(require("../components/Tooltip"));
-const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
+const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
 const SetMinMaxDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../shared/SetMinMaxDialog'))));
 const SetColorDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetColorDialog'))));
 // using a map because it preserves order
@@ -202,12 +202,7 @@ function stateModelFactory(pluginManager, configSchema) {
          * #action
          */
         toggleLogScale() {
-            if (self.scale !== 'log') {
-                self.scale = 'log';
-            }
-            else {
-                self.scale = 'linear';
-            }
+            self.scale = self.scale === 'log' ? 'linear' : 'log';
         },
         /**
          * #action
@@ -655,7 +650,7 @@ function stateModelFactory(pluginManager, configSchema) {
                 return (react_1.default.createElement(react_1.default.Fragment, null,
                     react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
                     needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
-                        react_1.default.createElement(WiggleDisplayComponent_1.YScaleBar, { model: self, orientation: "left" }))) : null));
+                        react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
             },
         };
     });

package/dist/LinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/MultiDensityRenderer/MultiDensityRenderer.js

@@ -7,7 +7,7 @@ const util_1 = require("../util");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 const drawxy_1 = require("../drawxy");
 class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
-    // @ts-ignore
+    // @ts-expect-error
     async draw(ctx, props) {
         const { bpPerPx, sources, regions, features } = props;
         const [region] = regions;
@@ -32,7 +32,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
             ctx.lineTo(width, height);
             ctx.stroke();
             ctx.translate(0, height);
-            feats = feats.concat(reducedFeatures);
+            feats = [...feats, ...reducedFeatures];
         });
         ctx.restore();
         return { reducedFeatures: feats };

package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map

@@ -1 +1 @@
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package/dist/MultiLineRenderer/MultiLineRenderer.js

@@ -7,7 +7,7 @@ const drawxy_1 = require("../drawxy");
 const util_1 = require("../util");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiLineRenderer extends WiggleBaseRenderer_1.default {
-    // @ts-ignore
+    // @ts-expect-error
     async draw(ctx, props) {
         const { sources, features } = props;
         const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
@@ -22,7 +22,7 @@ class MultiLineRenderer extends WiggleBaseRenderer_1.default {
                 features,
                 colorCallback: () => source.color || 'blue',
             });
-            feats = feats.concat(reducedFeatures);
+            feats = [...feats, ...reducedFeatures];
         });
         return { reducedFeatures: feats };
     }

package/dist/MultiLineRenderer/MultiLineRenderer.js.map

@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js

@@ -32,7 +32,7 @@ function DraggableDialog(props) {
             react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
                 title,
                 onClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => {
-                        // @ts-ignore
+                        // @ts-expect-error
                         onClose();
                     } },
                     react_1.default.createElement(Close_1.default, null))) : null),

package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map

@@ -1 +1 @@
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