@jbrowse/plugin-wiggle 2.2.2 → 2.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. package/dist/BigWigAdapter/index.js +1 -0
  2. package/dist/BigWigAdapter/index.js.map +1 -1
  3. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  4. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  5. package/dist/LinearWiggleDisplay/index.js +1 -0
  6. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  7. package/dist/LinearWiggleDisplay/models/model.d.ts +19 -16
  8. package/dist/LinearWiggleDisplay/models/model.js +13 -6
  9. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  10. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  11. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  12. package/dist/MultiLinearWiggleDisplay/index.js +1 -0
  13. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
  14. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +6 -7
  15. package/dist/MultiLinearWiggleDisplay/models/model.js +14 -7
  16. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  17. package/dist/MultiQuantitativeTrack/index.js +1 -0
  18. package/dist/MultiQuantitativeTrack/index.js.map +1 -1
  19. package/dist/MultiWiggleAdapter/index.js +4 -0
  20. package/dist/MultiWiggleAdapter/index.js.map +1 -1
  21. package/dist/QuantitativeTrack/index.js +1 -0
  22. package/dist/QuantitativeTrack/index.js.map +1 -1
  23. package/dist/drawxy.js +1 -0
  24. package/dist/drawxy.js.map +1 -1
  25. package/dist/index.d.ts +13 -15
  26. package/dist/index.js +1 -1
  27. package/dist/index.js.map +1 -1
  28. package/esm/BigWigAdapter/index.js +1 -0
  29. package/esm/BigWigAdapter/index.js.map +1 -1
  30. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  31. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  32. package/esm/LinearWiggleDisplay/index.js +1 -0
  33. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  34. package/esm/LinearWiggleDisplay/models/model.d.ts +19 -16
  35. package/esm/LinearWiggleDisplay/models/model.js +13 -6
  36. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  37. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +1 -1
  38. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  39. package/esm/MultiLinearWiggleDisplay/index.js +1 -0
  40. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -1
  41. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +6 -7
  42. package/esm/MultiLinearWiggleDisplay/models/model.js +14 -7
  43. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  44. package/esm/MultiQuantitativeTrack/index.js +1 -0
  45. package/esm/MultiQuantitativeTrack/index.js.map +1 -1
  46. package/esm/MultiWiggleAdapter/index.js +4 -0
  47. package/esm/MultiWiggleAdapter/index.js.map +1 -1
  48. package/esm/QuantitativeTrack/index.js +1 -0
  49. package/esm/QuantitativeTrack/index.js.map +1 -1
  50. package/esm/drawxy.js +1 -0
  51. package/esm/drawxy.js.map +1 -1
  52. package/esm/index.d.ts +13 -15
  53. package/esm/index.js +1 -1
  54. package/esm/index.js.map +1 -1
  55. package/package.json +3 -4
  56. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +3 -3
  57. package/src/BigWigAdapter/index.ts +1 -0
  58. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +3 -1
  59. package/src/LinearWiggleDisplay/index.ts +1 -0
  60. package/src/LinearWiggleDisplay/models/model.tsx +12 -6
  61. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +1 -1
  62. package/src/MultiLinearWiggleDisplay/index.ts +1 -0
  63. package/src/MultiLinearWiggleDisplay/models/model.tsx +14 -7
  64. package/src/MultiQuantitativeTrack/index.ts +1 -0
  65. package/src/MultiWiggleAdapter/index.ts +4 -0
  66. package/src/QuantitativeTrack/index.ts +1 -0
  67. package/src/drawxy.ts +1 -0
  68. package/src/index.ts +1 -2
package/dist/drawxy.js.map CHANGED
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package/dist/index.d.ts CHANGED
@@ -184,10 +184,10 @@ export default class WigglePlugin extends Plugin {
184
184
  reload(): void;
185
185
  } & {
186
186
  currBpPerPx: number;
187
+ scrollTop: number;
187
188
  message: string;
188
189
  featureIdUnderMouse: string | undefined;
189
190
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
190
- scrollTop: number;
191
191
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
192
192
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
193
193
  } & {
@@ -255,12 +255,11 @@ export default class WigglePlugin extends Plugin {
255
255
  overrideHeight: number;
256
256
  }): Promise<JSX.Element>;
257
257
  } & {
258
- statsReady: boolean;
259
258
  message: string | undefined;
260
259
  stats: {
261
260
  scoreMin: number;
262
261
  scoreMax: number;
263
- };
262
+ } | undefined;
264
263
  statsFetchInProgress: AbortController | undefined;
265
264
  } & {
266
265
  updateStats(stats: {
@@ -301,14 +300,14 @@ export default class WigglePlugin extends Plugin {
301
300
  } & {
302
301
  readonly filled: any;
303
302
  readonly summaryScoreModeSetting: any;
304
- readonly domain: number[];
303
+ readonly domain: number[] | undefined;
305
304
  readonly needsScalebar: boolean;
306
305
  readonly scaleOpts: {
307
- domain: number[];
306
+ domain: number[] | undefined;
308
307
  stats: {
309
308
  scoreMin: number;
310
309
  scoreMax: number;
311
- };
310
+ } | undefined;
312
311
  autoscaleType: any;
313
312
  scaleType: any;
314
313
  inverted: any;
@@ -322,7 +321,7 @@ export default class WigglePlugin extends Plugin {
322
321
  values: number[];
323
322
  format: (d: import("d3-scale").NumberValue) => string;
324
323
  position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
325
- };
324
+ } | undefined;
326
325
  readonly adapterCapabilities: string[];
327
326
  } & {
328
327
  renderProps(): any;
@@ -481,10 +480,10 @@ export default class WigglePlugin extends Plugin {
481
480
  reload(): void;
482
481
  } & {
483
482
  currBpPerPx: number;
483
+ scrollTop: number;
484
484
  message: string;
485
485
  featureIdUnderMouse: string | undefined;
486
486
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
487
- scrollTop: number;
488
487
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
489
488
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
490
489
  } & {
@@ -552,12 +551,11 @@ export default class WigglePlugin extends Plugin {
552
551
  overrideHeight: number;
553
552
  }): Promise<JSX.Element>;
554
553
  } & {
555
- statsReady: boolean;
556
554
  message: string | undefined;
557
555
  stats: {
558
556
  scoreMin: number;
559
557
  scoreMax: number;
560
- };
558
+ } | undefined;
561
559
  statsFetchInProgress: AbortController | undefined;
562
560
  } & {
563
561
  updateStats(stats: {
@@ -598,14 +596,14 @@ export default class WigglePlugin extends Plugin {
598
596
  } & {
599
597
  readonly filled: any;
600
598
  readonly summaryScoreModeSetting: any;
601
- readonly domain: number[];
599
+ readonly domain: number[] | undefined;
602
600
  readonly needsScalebar: boolean;
603
601
  readonly scaleOpts: {
604
- domain: number[];
602
+ domain: number[] | undefined;
605
603
  stats: {
606
604
  scoreMin: number;
607
605
  scoreMax: number;
608
- };
606
+ } | undefined;
609
607
  autoscaleType: any;
610
608
  scaleType: any;
611
609
  inverted: any;
@@ -619,7 +617,7 @@ export default class WigglePlugin extends Plugin {
619
617
  values: number[];
620
618
  format: (d: import("d3-scale").NumberValue) => string;
621
619
  position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
622
- };
620
+ } | undefined;
623
621
  readonly adapterCapabilities: string[];
624
622
  } & {
625
623
  renderProps(): any;
@@ -673,9 +671,9 @@ export default class WigglePlugin extends Plugin {
673
671
  }) => JSX.Element;
674
672
  XYPlotRenderer: typeof XYPlotRenderer;
675
673
  WiggleBaseRenderer: typeof WiggleBaseRenderer;
674
+ linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
676
675
  xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
677
676
  utils: typeof utils;
678
- linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
679
677
  };
680
678
  }
681
679
  export * from './util';
package/dist/index.js CHANGED
@@ -69,9 +69,9 @@ class WigglePlugin extends Plugin_1.default {
69
69
  XYPlotRendererReactComponent: XYPlotRenderer_2.ReactComponent,
70
70
  XYPlotRenderer: XYPlotRenderer_2.XYPlotRenderer,
71
71
  WiggleBaseRenderer: WiggleBaseRenderer_1.default,
72
+ linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
72
73
  xyPlotRendererConfigSchema: XYPlotRenderer_2.configSchema,
73
74
  utils,
74
- linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
75
75
  };
76
76
  }
77
77
  install(pm) {
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAGzC,sDAIkC;AAElC,SAAS;AACT,8EAAqD;AAoHnD,6BApHK,4BAAkB,CAoHL;AAnHpB,wEAA+C;AAkH7C,0BAlHK,yBAAe,CAkHL;AAjHjB,oEAA4C;AAC5C,4EAAoD;AACpD,sFAA8D;AAC9D,8EAAsD;AACtD,wEAAgD;AAChD,sEAA8C;AAC9C,0EAAkD;AAClD,gFAAwD;AACxD,0FAAkE;AAClE,gFAAwD;AACxD,sFAA8D;AAC9D,kFAA0D;AAC1D,4EAAoD;AACpD,kFAA0D;AAC1D,8FAAsE;AACtE,4FAAoE;AAEpE,8CAA+B;AAE/B,uDAI+B;AAE/B,+DAI8B;AAkF5B,kHArFkB,oCAAiC,OAqFlB;AAIjC,gHAxFgB,kCAA+B,OAwFhB;AAH/B,wFApFA,6BAAO,OAoFA;AAjFT,qDAIyB;AAEzB,MAAqB,YAAa,SAAQ,gBAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC,EAAjC,oCAAiC;YACjC,4BAA4B,EAA5B,+BAA4B;YAC5B,cAAc,EAAd,+BAAc;YACd,kBAAkB,EAAlB,4BAAkB;YAClB,+BAA+B,EAA/B,kCAA+B;YAC/B,0BAA0B,EAA1B,6BAA0B;YAC1B,KAAK;SACN,CAAA;IACH,CAAC;IAlEC,OAAO,CAAC,EAAiB;QACvB,IAAA,4BAAmB,EAAC,EAAE,CAAC,CAAA;QACvB,IAAA,uBAAc,EAAC,EAAE,CAAC,CAAA;QAClB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,kCAAyB,EAAC,EAAE,CAAC,CAAA;QAC7B,IAAA,0BAAiB,EAAC,EAAE,CAAC,CAAA;QACrB,IAAA,wBAAe,EAAC,EAAE,CAAC,CAAA;QACnB,IAAA,yBAAgB,EAAC,EAAE,CAAC,CAAA;QACpB,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,mCAA0B,EAAC,EAAE,CAAC,CAAA;QAC9B,IAAA,oCAA2B,EAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,iCAAoB,CAAC,EAAE,CAAC,CAAC,CAAA;QACnD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,sCAAyB,CAAC,EAAE,CAAC,CAAC,CAAA;QACxD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,kCAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAWF;AArED,+BAqEC;AAED,yCAAsB"}
package/esm/BigWigAdapter/index.js CHANGED
@@ -3,6 +3,7 @@ import configSchema from './configSchema';
3
3
  export default (pluginManager) => {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'BigWigAdapter',
6
+ displayName: 'BigWig adapter',
6
7
  configSchema,
7
8
  adapterCapabilities: [
8
9
  'hasResolution',
package/esm/BigWigAdapter/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,WAAW,EAAE,gBAAgB;QAC7B,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED
@@ -1,8 +1,8 @@
1
1
  import React from 'react';
2
+ import { observer } from 'mobx-react';
2
3
  import { measureText, getContainingView, getContainingTrack, } from '@jbrowse/core/util';
3
4
  import { getConf } from '@jbrowse/core/configuration';
4
5
  import { BaseLinearDisplayComponent, } from '@jbrowse/plugin-linear-genome-view';
5
- import { observer } from 'mobx-react';
6
6
  import YScaleBar from './YScaleBar';
7
7
  const LinearWiggleDisplay = observer((props) => {
8
8
  const { model } = props;
package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EACL,0BAA0B,GAE3B,MAAM,oCAAoC,CAAA;AAC3C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,SAAS,MAAM,aAAa,CAAA;AAInC,MAAM,mBAAmB,GAAG,QAAQ,CAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,WAAW,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA;AAElC,OAAO,EAAE,SAAS,EAAE,CAAA"}
1
+ {"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EACL,0BAA0B,GAE3B,MAAM,oCAAoC,CAAA;AAI3C,OAAO,SAAS,MAAM,aAAa,CAAA;AAInC,MAAM,mBAAmB,GAAG,QAAQ,CAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,WAAW,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA;AAElC,OAAO,EAAE,SAAS,EAAE,CAAA"}
package/esm/LinearWiggleDisplay/index.js CHANGED
@@ -9,6 +9,7 @@ export default (pluginManager) => {
9
9
  const stateModel = modelFactory(pluginManager, configSchema);
10
10
  return new DisplayType({
11
11
  name: 'LinearWiggleDisplay',
12
+ displayName: 'Wiggle display',
12
13
  configSchema,
13
14
  stateModel,
14
15
  trackType: 'QuantitativeTrack',
package/esm/LinearWiggleDisplay/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAChE,OAAO,OAAO,MAAM,sBAAsB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAChE,OAAO,OAAO,MAAM,sBAAsB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,WAAW,EAAE,gBAAgB;YAC7B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA"}
package/esm/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -12,7 +12,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
12
12
  type: import("mobx-state-tree").ISimpleType<string>;
13
13
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
14
14
  } & {
15
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
15
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; /**
16
+ * #property
17
+ */
16
18
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
17
19
  key: import("mobx-state-tree").ISimpleType<string>;
18
20
  region: import("mobx-state-tree").IModelType<{
@@ -179,23 +181,23 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
179
181
  readonly adapterConfig: any;
180
182
  readonly parentTrack: any;
181
183
  renderProps(): any;
182
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
184
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; /**
185
+ * #action
186
+ */
183
187
  readonly DisplayMessageComponent: React.FC<any> | undefined;
184
188
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
185
189
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
186
190
  regionCannotBeRendered(): undefined;
187
191
  } & {
188
- setError(error?: unknown): void; /**
189
- * #action
190
- */
192
+ setError(error?: unknown): void;
191
193
  setRpcDriverName(rpcDriverName: string): void;
192
194
  reload(): void;
193
195
  } & {
194
196
  currBpPerPx: number;
197
+ scrollTop: number;
195
198
  message: string;
196
199
  featureIdUnderMouse: string | undefined;
197
200
  contextMenuFeature: Feature | undefined;
198
- scrollTop: number;
199
201
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
200
202
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
201
203
  } & {
@@ -214,11 +216,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
214
216
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
215
217
  readonly currentBytesRequested: number;
216
218
  readonly currentFeatureScreenDensity: number;
217
- readonly maxFeatureScreenDensity: any; /**
219
+ readonly maxFeatureScreenDensity: any;
220
+ readonly estimatedStatsReady: boolean;
221
+ readonly maxAllowableBytes: number; /**
218
222
  * #getter
219
223
  */
220
- readonly estimatedStatsReady: boolean;
221
- readonly maxAllowableBytes: number;
222
224
  } & {
223
225
  setMessage(message: string): void;
224
226
  afterAttach(): void;
@@ -241,7 +243,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
241
243
  clearFeatureSelection(): void;
242
244
  setFeatureIdUnderMouse(feature: string | undefined): void;
243
245
  reload(): void;
244
- setContextMenuFeature(feature?: Feature | undefined): void;
246
+ setContextMenuFeature(feature?: Feature | undefined): void; /**
247
+ * #method
248
+ */
245
249
  } & {
246
250
  readonly regionTooLarge: boolean;
247
251
  readonly regionTooLargeReason: string;
@@ -265,12 +269,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
265
269
  overrideHeight: number;
266
270
  }): Promise<JSX.Element>;
267
271
  } & {
268
- statsReady: boolean;
269
272
  message: string | undefined;
270
273
  stats: {
271
274
  scoreMin: number;
272
275
  scoreMax: number;
273
- };
276
+ } | undefined;
274
277
  statsFetchInProgress: AbortController | undefined;
275
278
  } & {
276
279
  /**
@@ -402,7 +405,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
402
405
  /**
403
406
  * #getter
404
407
  */
405
- readonly domain: number[];
408
+ readonly domain: number[] | undefined;
406
409
  /**
407
410
  * #getter
408
411
  */
@@ -411,11 +414,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
411
414
  * #getter
412
415
  */
413
416
  readonly scaleOpts: {
414
- domain: number[];
417
+ domain: number[] | undefined;
415
418
  stats: {
416
419
  scoreMin: number;
417
420
  scoreMax: number;
418
- };
421
+ } | undefined;
419
422
  autoscaleType: any;
420
423
  scaleType: any;
421
424
  inverted: any;
@@ -441,7 +444,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
441
444
  values: number[];
442
445
  format: (d: import("d3-scale").NumberValue) => string;
443
446
  position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
444
- };
447
+ } | undefined;
445
448
  /**
446
449
  * #getter
447
450
  */
package/esm/LinearWiggleDisplay/models/model.js CHANGED
@@ -88,9 +88,8 @@ function stateModelFactory(pluginManager, configSchema) {
88
88
  }), {}),
89
89
  }))
90
90
  .volatile(() => ({
91
- statsReady: false,
92
91
  message: undefined,
93
- stats: { scoreMin: 0, scoreMax: 50 },
92
+ stats: undefined,
94
93
  statsFetchInProgress: undefined,
95
94
  }))
96
95
  .actions(self => ({
@@ -100,11 +99,13 @@ function stateModelFactory(pluginManager, configSchema) {
100
99
  updateStats(stats) {
101
100
  const { scoreMin, scoreMax } = stats;
102
101
  const EPSILON = 0.000001;
103
- if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
102
+ if (!self.stats) {
103
+ self.stats = { scoreMin, scoreMax };
104
+ }
105
+ else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
104
106
  Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
105
107
  self.stats = { scoreMin, scoreMax };
106
108
  }
107
- self.statsReady = true;
108
109
  },
109
110
  /**
110
111
  * #action
@@ -331,6 +332,9 @@ function stateModelFactory(pluginManager, configSchema) {
331
332
  */
332
333
  get domain() {
333
334
  const { stats, scaleType, minScore, maxScore } = self;
335
+ if (!stats) {
336
+ return undefined;
337
+ }
334
338
  const ret = getNiceDomain({
335
339
  domain: [stats.scoreMin, stats.scoreMax],
336
340
  bounds: [minScore, maxScore],
@@ -396,6 +400,9 @@ function stateModelFactory(pluginManager, configSchema) {
396
400
  const minimalTicks = getConf(self, 'minimalTicks');
397
401
  const inverted = getConf(self, 'inverted');
398
402
  const range = [height - YSCALEBAR_LABEL_OFFSET, YSCALEBAR_LABEL_OFFSET];
403
+ if (!domain) {
404
+ return undefined;
405
+ }
399
406
  const scale = getScale({
400
407
  scaleType,
401
408
  domain,
@@ -426,7 +433,7 @@ function stateModelFactory(pluginManager, configSchema) {
426
433
  const { filters, ticks, height, resolution, scaleOpts } = self;
427
434
  return {
428
435
  ...superProps,
429
- notReady: superProps.notReady || !self.statsReady,
436
+ notReady: superProps.notReady || !self.stats,
430
437
  rpcDriverName: self.rpcDriverName,
431
438
  displayModel: self,
432
439
  config: self.rendererConfig,
@@ -614,7 +621,7 @@ function stateModelFactory(pluginManager, configSchema) {
614
621
  * #action
615
622
  */
616
623
  async renderSvg(opts) {
617
- await when(() => self.statsReady && !!self.regionCannotBeRenderedText);
624
+ await when(() => !!self.stats && !!self.regionCannotBeRenderedText);
618
625
  const { needsScalebar, stats } = self;
619
626
  const { offsetPx } = getContainingView(self);
620
627
  return (React.createElement(React.Fragment, null,
package/esm/LinearWiggleDisplay/models/model.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED
@@ -37,7 +37,7 @@ const RectBg = (props) => {
37
37
  const ScoreLegend = observer(({ model }) => {
38
38
  const { ticks, scaleType } = model;
39
39
  const { width } = getContainingView(model);
40
- const legend = `[${ticks.values[0]}-${ticks.values[1]}]` +
40
+ const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
41
41
  (scaleType === 'log' ? ' (log scale)' : '');
42
42
  const len = measureText(legend, 14);
43
43
  const padding = 25;
package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/esm/MultiLinearWiggleDisplay/index.js CHANGED
@@ -7,6 +7,7 @@ export default (pluginManager) => {
7
7
  const configSchema = configSchemaFactory(pluginManager);
8
8
  return new DisplayType({
9
9
  name: 'MultiLinearWiggleDisplay',
10
+ displayName: 'Multi-wiggle display',
10
11
  configSchema,
11
12
  stateModel: modelFactory(pluginManager, configSchema),
12
13
  trackType: 'MultiQuantitativeTrack',
package/esm/MultiLinearWiggleDisplay/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAEhE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,YAAY;YACZ,UAAU,EAAE,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAEhE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
package/esm/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -137,10 +137,10 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
137
137
  reload(): void;
138
138
  } & {
139
139
  currBpPerPx: number;
140
+ scrollTop: number;
140
141
  message: string;
141
142
  featureIdUnderMouse: string | undefined;
142
143
  contextMenuFeature: Feature | undefined;
143
- scrollTop: number;
144
144
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
145
145
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
146
146
  } & {
@@ -208,12 +208,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
208
208
  overrideHeight: number;
209
209
  }): Promise<JSX.Element>;
210
210
  } & {
211
- statsReady: boolean;
212
211
  message: string | undefined;
213
212
  stats: {
214
213
  scoreMin: number;
215
214
  scoreMax: number;
216
- };
215
+ } | undefined;
217
216
  statsRegion: string | undefined;
218
217
  statsFetchInProgress: AbortController | undefined;
219
218
  featureUnderMouseVolatile: Feature | undefined;
@@ -275,14 +274,14 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
275
274
  } & {
276
275
  readonly filled: boolean;
277
276
  readonly summaryScoreModeSetting: string;
278
- readonly domain: number[];
277
+ readonly domain: number[] | undefined;
279
278
  readonly scaleOpts: {
280
279
  autoscaleType: string;
281
- domain: number[];
280
+ domain: number[] | undefined;
282
281
  stats: {
283
282
  scoreMin: number;
284
283
  scoreMax: number;
285
- };
284
+ } | undefined;
286
285
  scaleType: string;
287
286
  inverted: any;
288
287
  };
@@ -297,7 +296,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
297
296
  values: number[];
298
297
  format: (d: import("d3-scale").NumberValue) => string;
299
298
  position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
300
- };
299
+ } | undefined;
301
300
  readonly colors: string[];
302
301
  readonly adapterCapabilities: string[];
303
302
  } & {