@jbrowse/plugin-wiggle 2.2.2 → 2.3.1

package/dist/BigWigAdapter/index.js

@@ -31,6 +31,7 @@ const configSchema_1 = __importDefault(require("./configSchema"));
 exports.default = (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType_1.default({
         name: 'BigWigAdapter',
+        displayName: 'BigWig adapter',
         configSchema: configSchema_1.default,
         adapterCapabilities: [
             'hasResolution',

package/dist/BigWigAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AACzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AACzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,WAAW,EAAE,gBAAgB;QAC7B,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -5,10 +5,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.YScaleBar = void 0;
 const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_react_1 = require("mobx-react");
 const YScaleBar_1 = __importDefault(require("./YScaleBar"));
 exports.YScaleBar = YScaleBar_1.default;
 const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -1 +1 @@
-{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAC3C,2CAAqC;AAErC,4DAAmC;AAqC1B,oBArCF,mBAAS,CAqCE;AAjClB,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}
+{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAI3C,4DAAmC;AAqC1B,oBArCF,mBAAS,CAqCE;AAjClB,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}

package/dist/LinearWiggleDisplay/index.js

@@ -18,6 +18,7 @@ exports.default = (pluginManager) => {
         const stateModel = (0, model_1.default)(pluginManager, configSchema);
         return new DisplayType_1.default({
             name: 'LinearWiggleDisplay',
+            displayName: 'Wiggle display',
             configSchema,
             stateModel,
             trackType: 'QuantitativeTrack',

package/dist/LinearWiggleDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AAmBhB,uBAnBlB,eAAY,CAmBkB;AAlBrC,iGAAgE;AAkBvD,yBAlBF,gCAAc,CAkBE;AAjBvB,mEAA0C;AAiBH,kBAjBhC,iBAAO,CAiBgC;AAf9C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AAoBhB,uBApBlB,eAAY,CAoBkB;AAnBrC,iGAAgE;AAmBvD,yBAnBF,gCAAc,CAmBE;AAlBvB,mEAA0C;AAkBH,kBAlBhC,iBAAO,CAkBgC;AAhB9C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,WAAW,EAAE,gBAAgB;YAC7B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/LinearWiggleDisplay/models/model.d.ts

@@ -12,7 +12,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; /**
+     * #property
+     */
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
@@ -179,23 +181,23 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; /**
+     * #action
+     */
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: unknown): void; /**
-     * #action
-     */
+    setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
@@ -214,11 +216,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any; /**
+    readonly maxFeatureScreenDensity: any;
+    readonly estimatedStatsReady: boolean;
+    readonly maxAllowableBytes: number; /**
      * #getter
      */
-    readonly estimatedStatsReady: boolean;
-    readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
     afterAttach(): void;
@@ -241,7 +243,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
     reload(): void;
-    setContextMenuFeature(feature?: Feature | undefined): void;
+    setContextMenuFeature(feature?: Feature | undefined): void; /**
+     * #method
+     */
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
@@ -265,12 +269,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
-    statsReady: boolean;
     message: string | undefined;
     stats: {
         scoreMin: number;
         scoreMax: number;
-    };
+    } | undefined;
     statsFetchInProgress: AbortController | undefined;
 } & {
     /**
@@ -402,7 +405,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly domain: number[];
+    readonly domain: number[] | undefined;
     /**
      * #getter
      */
@@ -411,11 +414,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
      * #getter
      */
     readonly scaleOpts: {
-        domain: number[];
+        domain: number[] | undefined;
         stats: {
             scoreMin: number;
             scoreMax: number;
-        };
+        } | undefined;
         autoscaleType: any;
         scaleType: any;
         inverted: any;
@@ -441,7 +444,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         values: number[];
         format: (d: import("d3-scale").NumberValue) => string;
         position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    };
+    } | undefined;
     /**
      * #getter
      */

package/dist/LinearWiggleDisplay/models/model.js

@@ -116,9 +116,8 @@ function stateModelFactory(pluginManager, configSchema) {
         }), {}),
     }))
         .volatile(() => ({
-        statsReady: false,
         message: undefined,
-        stats: { scoreMin: 0, scoreMax: 50 },
+        stats: undefined,
         statsFetchInProgress: undefined,
     }))
         .actions(self => ({
@@ -128,11 +127,13 @@ function stateModelFactory(pluginManager, configSchema) {
         updateStats(stats) {
             const { scoreMin, scoreMax } = stats;
             const EPSILON = 0.000001;
-            if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+            if (!self.stats) {
+                self.stats = { scoreMin, scoreMax };
+            }
+            else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
                 Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
                 self.stats = { scoreMin, scoreMax };
             }
-            self.statsReady = true;
         },
         /**
          * #action
@@ -359,6 +360,9 @@ function stateModelFactory(pluginManager, configSchema) {
              */
             get domain() {
                 const { stats, scaleType, minScore, maxScore } = self;
+                if (!stats) {
+                    return undefined;
+                }
                 const ret = (0, util_2.getNiceDomain)({
                     domain: [stats.scoreMin, stats.scoreMax],
                     bounds: [minScore, maxScore],
@@ -424,6 +428,9 @@ function stateModelFactory(pluginManager, configSchema) {
             const minimalTicks = (0, configuration_1.getConf)(self, 'minimalTicks');
             const inverted = (0, configuration_1.getConf)(self, 'inverted');
             const range = [height - util_2.YSCALEBAR_LABEL_OFFSET, util_2.YSCALEBAR_LABEL_OFFSET];
+            if (!domain) {
+                return undefined;
+            }
             const scale = (0, util_2.getScale)({
                 scaleType,
                 domain,
@@ -454,7 +461,7 @@ function stateModelFactory(pluginManager, configSchema) {
                 const { filters, ticks, height, resolution, scaleOpts } = self;
                 return {
                     ...superProps,
-                    notReady: superProps.notReady || !self.statsReady,
+                    notReady: superProps.notReady || !self.stats,
                     rpcDriverName: self.rpcDriverName,
                     displayModel: self,
                     config: self.rendererConfig,
@@ -642,7 +649,7 @@ function stateModelFactory(pluginManager, configSchema) {
              * #action
              */
             async renderSvg(opts) {
-                await (0, mobx_1.when)(() => self.statsReady && !!self.regionCannotBeRenderedText);
+                await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
                 const { needsScalebar, stats } = self;
                 const { offsetPx } = (0, util_1.getContainingView)(self);
                 return (react_1.default.createElement(react_1.default.Fragment, null,

package/dist/LinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -44,7 +44,7 @@ const RectBg = (props) => {
 const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
     const { ticks, scaleType } = model;
     const { width } = (0, util_1.getContainingView)(model);
-    const legend = `[${ticks.values[0]}-${ticks.values[1]}]` +
+    const legend = `[${ticks === null || ticks === void 0 ? void 0 : ticks.values[0]}-${ticks === null || ticks === void 0 ? void 0 : ticks.values[1]}]` +
         (scaleType === 'log' ? ' (log scale)' : '');
     const len = (0, util_1.measureText)(legend, 14);
     const padding = 25;

package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/index.js

@@ -12,6 +12,7 @@ exports.default = (pluginManager) => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
         return new DisplayType_1.default({
             name: 'MultiLinearWiggleDisplay',
+            displayName: 'Multi-wiggle display',
             configSchema,
             stateModel: (0, model_1.default)(pluginManager, configSchema),
             trackType: 'MultiQuantitativeTrack',

package/dist/MultiLinearWiggleDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iGAAgE;AAEhE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iGAAgE;AAEhE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/MultiLinearWiggleDisplay/models/model.d.ts

@@ -137,10 +137,10 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
@@ -208,12 +208,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
-    statsReady: boolean;
     message: string | undefined;
     stats: {
         scoreMin: number;
         scoreMax: number;
-    };
+    } | undefined;
     statsRegion: string | undefined;
     statsFetchInProgress: AbortController | undefined;
     featureUnderMouseVolatile: Feature | undefined;
@@ -275,14 +274,14 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
 } & {
     readonly filled: boolean;
     readonly summaryScoreModeSetting: string;
-    readonly domain: number[];
+    readonly domain: number[] | undefined;
     readonly scaleOpts: {
         autoscaleType: string;
-        domain: number[];
+        domain: number[] | undefined;
         stats: {
             scoreMin: number;
             scoreMax: number;
-        };
+        } | undefined;
         scaleType: string;
         inverted: any;
     };
@@ -297,7 +296,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         values: number[];
         format: (d: import("d3-scale").NumberValue) => string;
         position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    };
+    } | undefined;
     readonly colors: string[];
     readonly adapterCapabilities: string[];
 } & {

package/dist/MultiLinearWiggleDisplay/models/model.js

@@ -77,9 +77,8 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     }), {}),
 }))
     .volatile(() => ({
-    statsReady: false,
     message: undefined,
-    stats: { scoreMin: 0, scoreMax: 50 },
+    stats: undefined,
     statsRegion: undefined,
     statsFetchInProgress: undefined,
     featureUnderMouseVolatile: undefined,
@@ -95,10 +94,12 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     updateStats(stats) {
         const { scoreMin, scoreMax } = stats;
         const EPSILON = 0.000001;
-        if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+        if (!self.stats) {
+            self.stats = { scoreMin, scoreMax };
+        }
+        else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
             Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
             self.stats = { scoreMin, scoreMax };
-            self.statsReady = true;
         }
     },
     setSources(sources) {
@@ -305,6 +306,9 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
         },
         get domain() {
             const { stats, scaleType, minScore, maxScore } = self;
+            if (!stats) {
+                return undefined;
+            }
             const { scoreMin, scoreMax } = stats;
             const ret = (0, util_2.getNiceDomain)({
                 domain: [scoreMin, scoreMax],
@@ -354,6 +358,9 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     .views(self => ({
     get ticks() {
         const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
+        if (!domain) {
+            return undefined;
+        }
         const offset = isMultiRow ? 0 : util_2.YSCALEBAR_LABEL_OFFSET;
         const ticks = (0, react_d3_axis_mod_1.axisPropsFromTickScale)((0, util_2.getScale)({
             scaleType,
@@ -387,10 +394,10 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     return {
         renderProps() {
             const superProps = superRenderProps();
-            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, sources, statsReady, ticks, rendererConfig: config, } = self;
+            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, stats, sources, ticks, rendererConfig: config, } = self;
             return {
                 ...superProps,
-                notReady: superProps.notReady || !sources || !statsReady,
+                notReady: superProps.notReady || !sources || !stats,
                 displayModel: self,
                 config,
                 displayCrossHatches,
@@ -585,7 +592,7 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
             }));
         },
         async renderSvg(opts) {
-            await (0, mobx_1.when)(() => self.statsReady && !!self.regionCannotBeRenderedText);
+            await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
             const { offsetPx } = (0, util_1.getContainingView)(self);
             return (react_1.default.createElement(react_1.default.Fragment, null,
                 react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),

package/dist/MultiLinearWiggleDisplay/models/model.js.map

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package/dist/MultiQuantitativeTrack/index.js

@@ -11,6 +11,7 @@ exports.default = (pluginManager) => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
         return new TrackType_1.default({
             name: 'MultiQuantitativeTrack',
+            displayName: 'Multi-quantitative track',
             configSchema,
             stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
         });

package/dist/MultiQuantitativeTrack/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,WAAW,EAAE,0BAA0B;YACvC,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/MultiWiggleAdapter/index.js

@@ -31,12 +31,16 @@ const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTyp
 exports.default = (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType_1.default({
         name: 'MultiWiggleAdapter',
+        displayName: 'Multi-wiggle adapter',
         configSchema: configSchema_1.default,
         adapterCapabilities: [
             'hasResolution',
             'hasLocalStats',
             'hasGlobalStats',
         ],
+        adapterMetadata: {
+            hiddenFromGUI: true,
+        },
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
     }));
 };

package/dist/MultiWiggleAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,kGAAyE;AAGzE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,sBAAsB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,kGAAyE;AAGzE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,WAAW,EAAE,sBAAsB;QACnC,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,sBAAsB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/QuantitativeTrack/index.js

@@ -11,6 +11,7 @@ exports.default = (pluginManager) => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
         return new TrackType_1.default({
             name: 'QuantitativeTrack',
+            displayName: 'Quantitative track',
             configSchema,
             stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema),
         });

package/dist/QuantitativeTrack/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,WAAW,EAAE,oBAAoB;YACjC,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/drawxy.js

@@ -4,6 +4,7 @@ exports.drawDensity = exports.drawLine = exports.drawXY = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const util_2 = require("./util");
+// avoid drawing negative width features for SVG exports
 function fillRectCtx(x, y, width, height, ctx, color) {
     if (width < 0) {
         x += width;