@jbrowse/plugin-wiggle 2.17.0 → 2.18.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +26 -26
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +1 -1
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/dist/LinearWiggleDisplay/configSchema.js +0 -15
- package/dist/LinearWiggleDisplay/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/index.js +1 -1
- package/dist/LinearWiggleDisplay/model.d.ts +13 -71
- package/dist/LinearWiggleDisplay/model.js +2 -51
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +2 -2
- package/dist/LinearWiggleDisplay/renderSvg.js +1 -2
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +2 -3
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +3 -7
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +3 -5
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +15 -26
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +1 -1
- package/dist/MultiLinearWiggleDisplay/model.d.ts +17 -139
- package/dist/MultiLinearWiggleDisplay/model.js +14 -120
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +2 -2
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/dist/MultiWiggleRendering.d.ts +3 -3
- package/dist/MultiWiggleRendering.js +2 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/Tooltip.js +1 -2
- package/dist/WiggleBaseRenderer.d.ts +5 -8
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +2 -2
- package/dist/WiggleRendering.js +1 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +2 -20
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/dist/getMultiWiggleSourcesAutorun.js +10 -7
- package/dist/getQuantitativeStats.d.ts +3 -3
- package/dist/getQuantitativeStats.js +2 -10
- package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
- package/dist/getQuantitativeStatsAutorun.js +18 -20
- package/dist/index.d.ts +4 -4
- package/dist/index.js +21 -24
- package/dist/shared/SetMinMaxDialog.js +1 -1
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/dist/shared/SharedWiggleConfigSchema.js +1 -30
- package/dist/shared/SharedWiggleMixin.d.ts +20 -225
- package/dist/shared/SharedWiggleMixin.js +7 -177
- package/dist/util.d.ts +0 -28
- package/dist/util.js +1 -45
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -3
- package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/esm/LinearWiggleDisplay/configSchema.js +0 -15
- package/esm/LinearWiggleDisplay/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/index.js +1 -1
- package/esm/LinearWiggleDisplay/model.d.ts +13 -71
- package/esm/LinearWiggleDisplay/model.js +4 -53
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +2 -2
- package/esm/LinearWiggleDisplay/renderSvg.js +1 -2
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +4 -8
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -6
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +16 -27
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +1 -1
- package/esm/MultiLinearWiggleDisplay/model.d.ts +17 -139
- package/esm/MultiLinearWiggleDisplay/model.js +14 -120
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +3 -3
- package/esm/MultiWiggleRendering.js +2 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/Tooltip.js +1 -2
- package/esm/WiggleBaseRenderer.d.ts +5 -8
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +2 -2
- package/esm/WiggleRendering.js +1 -3
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +2 -20
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/esm/getMultiWiggleSourcesAutorun.js +9 -6
- package/esm/getQuantitativeStats.d.ts +3 -3
- package/esm/getQuantitativeStats.js +3 -11
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
- package/esm/getQuantitativeStatsAutorun.js +18 -20
- package/esm/index.d.ts +4 -4
- package/esm/index.js +13 -16
- package/esm/shared/SetMinMaxDialog.js +1 -1
- package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/esm/shared/SharedWiggleConfigSchema.js +1 -30
- package/esm/shared/SharedWiggleMixin.d.ts +20 -225
- package/esm/shared/SharedWiggleMixin.js +8 -178
- package/esm/util.d.ts +0 -28
- package/esm/util.js +1 -45
- package/package.json +2 -4
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import PluginManager from '@jbrowse/core/PluginManager';
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import type PluginManager from '@jbrowse/core/PluginManager';
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export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
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exports.default = MultiLinearWiggleDisplayF;
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const react_1 = require("react");
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const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
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const configSchema_1 = __importDefault(require("./configSchema"));
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const model_1 = __importDefault(require("./model"));
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const react_1 = require("react");
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function MultiLinearWiggleDisplayF(pluginManager) {
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export declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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adapterProps(): any;
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range: number[];
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values: number[];
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format: (d: import("d3-scale").NumberValue) => string;
|
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position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
|
|
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readonly colors: string[];
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|
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|
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|
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readonly quantitativeStatsRelevantToCurrentZoom: boolean;
|
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} & {
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|
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|
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renderProps(): any;
|
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/**
|
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|
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|
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readonly hasResolution: boolean;
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|
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|
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readonly hasGlobalStats: boolean;
|
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|
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|
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|
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|
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|
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|
readonly fillSetting: 2 | 1 | 0;
|
|
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|
} & {
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|
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/**
|
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|
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|
|
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|
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*/
|
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493
374
|
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
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label: string;
|
|
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|
subMenu: ({
|
|
@@ -536,9 +417,6 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
|
|
|
536
417
|
})[];
|
|
537
418
|
} & {
|
|
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419
|
afterAttach(): void;
|
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|
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/**
|
|
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|
-
* #action
|
|
541
|
-
*/
|
|
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420
|
renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
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421
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
544
422
|
export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
@@ -28,21 +28,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
28
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
29
|
exports.stateModelFactory = stateModelFactory;
|
|
30
30
|
const react_1 = require("react");
|
|
31
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
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|
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const react_d3_axis_mod_1 = require("react-d3-axis-mod");
|
|
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|
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const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
|
|
34
|
-
// jbrowse imports
|
|
35
31
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
36
|
-
const util_1 = require("@jbrowse/core/util");
|
|
37
32
|
const colors_1 = require("@jbrowse/core/ui/colors");
|
|
38
|
-
|
|
39
|
-
const
|
|
33
|
+
const util_1 = require("@jbrowse/core/util");
|
|
34
|
+
const stopToken_1 = require("@jbrowse/core/util/stopToken");
|
|
35
|
+
const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
|
|
36
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
37
|
+
const react_d3_axis_mod_1 = require("react-d3-axis-mod");
|
|
40
38
|
const SharedWiggleMixin_1 = __importDefault(require("../shared/SharedWiggleMixin"));
|
|
39
|
+
const util_2 = require("../util");
|
|
41
40
|
const randomColor = () => '#000000'.replaceAll('0', () => (~~(Math.random() * 16)).toString(16));
|
|
42
|
-
// lazies
|
|
43
41
|
const Tooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/Tooltip'))));
|
|
44
42
|
const SetColorDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetColorDialog'))));
|
|
45
|
-
// using a map because it preserves order
|
|
46
43
|
const rendererTypes = new Map([
|
|
47
44
|
['xyplot', 'MultiXYPlotRenderer'],
|
|
48
45
|
['multirowxy', 'MultiRowXYPlotRenderer'],
|
|
@@ -50,71 +47,46 @@ const rendererTypes = new Map([
|
|
|
50
47
|
['multiline', 'MultiLineRenderer'],
|
|
51
48
|
['multirowline', 'MultiRowLineRenderer'],
|
|
52
49
|
]);
|
|
53
|
-
/**
|
|
54
|
-
* #stateModel MultiLinearWiggleDisplay
|
|
55
|
-
* extends
|
|
56
|
-
* - [SharedWiggleMixin](../sharedwigglemixin)
|
|
57
|
-
*/
|
|
58
50
|
function stateModelFactory(pluginManager, configSchema) {
|
|
59
51
|
return mobx_state_tree_1.types
|
|
60
52
|
.compose('MultiLinearWiggleDisplay', (0, SharedWiggleMixin_1.default)(configSchema), mobx_state_tree_1.types.model({
|
|
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|
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/**
|
|
62
|
-
* #property
|
|
63
|
-
*/
|
|
64
53
|
type: mobx_state_tree_1.types.literal('MultiLinearWiggleDisplay'),
|
|
65
|
-
/**
|
|
66
|
-
* #property
|
|
67
|
-
*/
|
|
68
54
|
layout: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.frozen(), []),
|
|
69
55
|
}))
|
|
70
56
|
.volatile(() => ({
|
|
57
|
+
sourcesLoadingStopToken: undefined,
|
|
71
58
|
featureUnderMouseVolatile: undefined,
|
|
72
59
|
sourcesVolatile: undefined,
|
|
73
60
|
}))
|
|
74
61
|
.actions(self => ({
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
62
|
+
setSourcesLoading(str) {
|
|
63
|
+
if (self.sourcesLoadingStopToken) {
|
|
64
|
+
(0, stopToken_1.stopStopToken)(self.sourcesLoadingStopToken);
|
|
65
|
+
}
|
|
66
|
+
self.sourcesLoadingStopToken = str;
|
|
67
|
+
},
|
|
78
68
|
setLayout(layout) {
|
|
79
69
|
self.layout = layout;
|
|
80
70
|
},
|
|
81
|
-
/**
|
|
82
|
-
* #action
|
|
83
|
-
*/
|
|
84
71
|
clearLayout() {
|
|
85
72
|
self.layout = [];
|
|
86
73
|
},
|
|
87
|
-
/**
|
|
88
|
-
* #action
|
|
89
|
-
*/
|
|
90
74
|
setSources(sources) {
|
|
91
75
|
if (!(0, fast_deep_equal_1.default)(sources, self.sourcesVolatile)) {
|
|
92
76
|
self.sourcesVolatile = sources;
|
|
93
77
|
}
|
|
94
78
|
},
|
|
95
|
-
/**
|
|
96
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|
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|
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|
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|
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|
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|
adapterProps() {
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
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175
|
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|
|
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|
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|
|
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|
|
|
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|
}), 4);
|
|
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186
|
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|
|
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|
},
|
|
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|
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|
|
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|
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|
|
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|
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*/
|
|
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188
|
get colors() {
|
|
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189
|
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|
|
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|
'red',
|
|
@@ -282,10 +199,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
282
199
|
'pink',
|
|
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200
|
];
|
|
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|
},
|
|
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|
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/**
|
|
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|
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|
|
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|
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* unused currently
|
|
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|
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*/
|
|
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202
|
get quantitativeStatsRelevantToCurrentZoom() {
|
|
290
203
|
var _a;
|
|
291
204
|
const view = (0, util_1.getContainingView)(self);
|
|
@@ -294,9 +207,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
294
207
|
};
|
|
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208
|
})
|
|
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|
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|
|
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|
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/**
|
|
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|
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|
|
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|
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*/
|
|
300
210
|
renderProps() {
|
|
301
211
|
const superProps = self.adapterProps();
|
|
302
212
|
return {
|
|
@@ -317,21 +227,12 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
317
227
|
},
|
|
318
228
|
};
|
|
319
229
|
},
|
|
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|
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/**
|
|
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|
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|
|
322
|
-
*/
|
|
323
230
|
get hasResolution() {
|
|
324
231
|
return self.adapterCapabilities.includes('hasResolution');
|
|
325
232
|
},
|
|
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|
-
/**
|
|
327
|
-
* #getter
|
|
328
|
-
*/
|
|
329
233
|
get hasGlobalStats() {
|
|
330
234
|
return self.adapterCapabilities.includes('hasGlobalStats');
|
|
331
235
|
},
|
|
332
|
-
/**
|
|
333
|
-
* #getter
|
|
334
|
-
*/
|
|
335
236
|
get fillSetting() {
|
|
336
237
|
if (self.filled) {
|
|
337
238
|
return 0;
|
|
@@ -348,9 +249,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
348
249
|
const { trackMenuItems: superTrackMenuItems } = self;
|
|
349
250
|
const hasRenderings = (0, configuration_1.getConf)(self, 'defaultRendering');
|
|
350
251
|
return {
|
|
351
|
-
/**
|
|
352
|
-
* #method
|
|
353
|
-
*/
|
|
354
252
|
trackMenuItems() {
|
|
355
253
|
return [
|
|
356
254
|
...superTrackMenuItems(),
|
|
@@ -423,7 +321,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
423
321
|
const { renderSvg: superRenderSvg } = self;
|
|
424
322
|
return {
|
|
425
323
|
afterAttach() {
|
|
426
|
-
// eslint-disable-next-line @typescript-eslint/no-floating-promises
|
|
427
324
|
;
|
|
428
325
|
(async () => {
|
|
429
326
|
try {
|
|
@@ -442,9 +339,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
442
339
|
}
|
|
443
340
|
})();
|
|
444
341
|
},
|
|
445
|
-
/**
|
|
446
|
-
* #action
|
|
447
|
-
*/
|
|
448
342
|
async renderSvg(opts) {
|
|
449
343
|
const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
|
|
450
344
|
return renderSvg(self, opts, superRenderSvg);
|
|
@@ -1,4 +1,4 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
-
import {
|
|
3
|
-
import {
|
|
2
|
+
import type { WiggleDisplayModel } from './model';
|
|
3
|
+
import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
4
4
|
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
|
|
@@ -12,7 +12,7 @@ async function renderSvg(self, opts, superRenderSvg) {
|
|
|
12
12
|
await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
|
|
13
13
|
const { offsetPx } = (0, util_1.getContainingView)(self);
|
|
14
14
|
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
15
|
-
react_1.default.createElement("g",
|
|
15
|
+
react_1.default.createElement("g", null, await superRenderSvg(opts)),
|
|
16
16
|
react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
|
|
17
17
|
react_1.default.createElement(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }))));
|
|
18
18
|
}
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
3
3
|
name: {
|
|
4
4
|
description: string;
|
|
@@ -2,15 +2,9 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
4
|
const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
|
|
5
|
-
|
|
6
|
-
* #config MultiQuantitativeTrack
|
|
7
|
-
*/
|
|
8
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
5
|
+
function x() { }
|
|
9
6
|
const configSchema = (pluginManager) => {
|
|
10
7
|
return (0, configuration_1.ConfigurationSchema)('MultiQuantitativeTrack', {}, {
|
|
11
|
-
/**
|
|
12
|
-
* #baseConfiguration
|
|
13
|
-
*/
|
|
14
8
|
baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
|
|
15
9
|
});
|
|
16
10
|
};
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
|
|
@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.default = MultiQuantitativeTrackF;
|
|
7
|
-
const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
|
|
8
7
|
const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
|
|
8
|
+
const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
|
|
9
9
|
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
10
10
|
function MultiQuantitativeTrackF(pluginManager) {
|
|
11
11
|
pluginManager.addTrackType(() => {
|
|
@@ -1,5 +1,6 @@
|
|
|
1
|
-
import
|
|
2
|
-
import
|
|
1
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
+
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
3
4
|
export default class MultiRowLineRenderer extends WiggleBaseRenderer {
|
|
4
5
|
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
5
6
|
reducedFeatures: Feature[];
|