@jbrowse/plugin-wiggle 1.7.11 → 2.0.0

package/dist/LinearWiggleDisplay/components/YScaleBar.js

@@ -1,33 +1,26 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
+var react_d3_axis_mod_1 = require("react-d3-axis-mod");
+var YScaleBar = (0, mobx_react_1.observer)(function (_a) {
+    var model = _a.model, orientation = _a.orientation;
+    var ticks = model.ticks;
+    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, __assign({}, ticks, { shadow: 2, format: function (n) { return n; }, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } }))) : null;
 });
-exports.default = void 0;
-
-var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _reactD3AxisMod = require("react-d3-axis-mod");
-
-var YScaleBar = (0, _mobxReact.observer)(function (_ref) {
-  var model = _ref.model,
-      orientation = _ref.orientation;
-  var ticks = model.ticks;
-  return ticks ? /*#__PURE__*/_react.default.createElement(_reactD3AxisMod.Axis, (0, _extends2.default)({}, ticks, {
-    shadow: 2,
-    format: function format(n) {
-      return n;
-    },
-    style: {
-      orient: orientation === 'left' ? _reactD3AxisMod.LEFT : _reactD3AxisMod.RIGHT
-    }
-  })) : null;
-});
-var _default = YScaleBar;
-exports.default = _default;
+exports.default = YScaleBar;
+//# sourceMappingURL=YScaleBar.js.map

package/dist/LinearWiggleDisplay/components/YScaleBar.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,uDAAqD;AAGrD,IAAM,SAAS,GAAG,IAAA,qBAAQ,EACxB,UAAC,EAMA;QALC,KAAK,WAAA,EACL,WAAW,iBAAA;IAKH,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IAEvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,eACC,KAAK,IACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,UAAC,CAAS,IAAK,OAAA,CAAC,EAAD,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,IACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,kBAAe,SAAS,CAAA"}

package/dist/LinearWiggleDisplay/index.js

@@ -1,43 +1,14 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "ReactComponent", {
-  enumerable: true,
-  get: function get() {
-    return _WiggleDisplayComponent.default;
-  }
-});
-Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", {
-  enumerable: true,
-  get: function get() {
-    return _model.YSCALEBAR_LABEL_OFFSET;
-  }
-});
-Object.defineProperty(exports, "configSchemaFactory", {
-  enumerable: true,
-  get: function get() {
-    return _configSchema.default;
-  }
-});
-Object.defineProperty(exports, "modelFactory", {
-  enumerable: true,
-  get: function get() {
-    return _model.default;
-  }
-});
-
-var _configSchema = _interopRequireDefault(require("./models/configSchema"));
-
-var _model = _interopRequireWildcard(require("./models/model"));
-
-var _WiggleDisplayComponent = _interopRequireDefault(require("./components/WiggleDisplayComponent"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ReactComponent = exports.YSCALEBAR_LABEL_OFFSET = exports.modelFactory = exports.configSchemaFactory = void 0;
+var configSchema_1 = require("./models/configSchema");
+Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
+var model_1 = require("./models/model");
+Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
+Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", { enumerable: true, get: function () { return model_1.YSCALEBAR_LABEL_OFFSET; } });
+var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
+Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_1).default; } });
+//# sourceMappingURL=index.js.map

package/dist/LinearWiggleDisplay/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;AAAA,sDAAsE;AAA7D,oIAAA,OAAO,OAAuB;AACvC,wCAAgF;AAAvE,sHAAA,OAAO,OAAgB;AAAE,+GAAA,sBAAsB,OAAA;AACxD,8EAA+E;AAAtE,yIAAA,OAAO,OAAkB"}

package/dist/LinearWiggleDisplay/models/configSchema.js

@@ -1,71 +1,67 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = WiggleConfigFactory;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _pluginLinearGenomeView = require("@jbrowse/plugin-linear-genome-view");
-
-var _mobxStateTree = require("mobx-state-tree");
-
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+var mobx_state_tree_1 = require("mobx-state-tree");
 function WiggleConfigFactory(pluginManager) {
-  var XYPlotRendererConfigSchema = pluginManager.getRendererType('XYPlotRenderer').configSchema;
-  var DensityRendererConfigSchema = pluginManager.getRendererType('DensityRenderer').configSchema;
-  var LinePlotRendererConfigSchema = pluginManager.getRendererType('LinePlotRenderer').configSchema;
-  return (0, _configuration.ConfigurationSchema)('LinearWiggleDisplay', {
-    autoscale: {
-      type: 'stringEnum',
-      defaultValue: 'local',
-      model: _mobxStateTree.types.enumeration('Autoscale type', ['global', 'local', 'globalsd', 'localsd', 'zscore']),
-      description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)'
-    },
-    minimalTicks: {
-      type: 'boolean',
-      defaultValue: false,
-      description: 'use the minimal amount of ticks'
-    },
-    minScore: {
-      type: 'number',
-      defaultValue: Number.MIN_VALUE,
-      description: 'minimum value for the y-scale'
-    },
-    maxScore: {
-      type: 'number',
-      description: 'maximum value for the y-scale',
-      defaultValue: Number.MAX_VALUE
-    },
-    numStdDev: {
-      type: 'number',
-      description: 'number of standard deviations to use for autoscale types globalsd or localsd',
-      defaultValue: 3
-    },
-    scaleType: {
-      type: 'stringEnum',
-      model: _mobxStateTree.types.enumeration('Scale type', ['linear', 'log']),
-      // todo zscale
-      description: 'The type of scale to use',
-      defaultValue: 'linear'
-    },
-    inverted: {
-      type: 'boolean',
-      description: 'draw upside down',
-      defaultValue: false
-    },
-    defaultRendering: {
-      type: 'stringEnum',
-      model: _mobxStateTree.types.enumeration('Rendering', ['density', 'xyplot', 'line']),
-      defaultValue: 'xyplot'
-    },
-    renderers: (0, _configuration.ConfigurationSchema)('RenderersConfiguration', {
-      DensityRenderer: DensityRendererConfigSchema,
-      XYPlotRenderer: XYPlotRendererConfigSchema,
-      LinePlotRenderer: LinePlotRendererConfigSchema
-    })
-  }, {
-    baseConfiguration: _pluginLinearGenomeView.baseLinearDisplayConfigSchema,
-    explicitlyTyped: true
-  });
-}
+    var XYPlotRendererConfigSchema = pluginManager.getRendererType('XYPlotRenderer').configSchema;
+    var DensityRendererConfigSchema = pluginManager.getRendererType('DensityRenderer').configSchema;
+    var LinePlotRendererConfigSchema = pluginManager.getRendererType('LinePlotRenderer').configSchema;
+    return (0, configuration_1.ConfigurationSchema)('LinearWiggleDisplay', {
+        autoscale: {
+            type: 'stringEnum',
+            defaultValue: 'local',
+            model: mobx_state_tree_1.types.enumeration('Autoscale type', [
+                'global',
+                'local',
+                'globalsd',
+                'localsd',
+                'zscore',
+            ]),
+            description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
+        },
+        minimalTicks: {
+            type: 'boolean',
+            defaultValue: false,
+            description: 'use the minimal amount of ticks',
+        },
+        minScore: {
+            type: 'number',
+            defaultValue: Number.MIN_VALUE,
+            description: 'minimum value for the y-scale',
+        },
+        maxScore: {
+            type: 'number',
+            description: 'maximum value for the y-scale',
+            defaultValue: Number.MAX_VALUE,
+        },
+        numStdDev: {
+            type: 'number',
+            description: 'number of standard deviations to use for autoscale types globalsd or localsd',
+            defaultValue: 3,
+        },
+        scaleType: {
+            type: 'stringEnum',
+            model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
+            description: 'The type of scale to use',
+            defaultValue: 'linear',
+        },
+        inverted: {
+            type: 'boolean',
+            description: 'draw upside down',
+            defaultValue: false,
+        },
+        defaultRendering: {
+            type: 'stringEnum',
+            model: mobx_state_tree_1.types.enumeration('Rendering', ['density', 'xyplot', 'line']),
+            defaultValue: 'xyplot',
+        },
+        renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
+            DensityRenderer: DensityRendererConfigSchema,
+            XYPlotRenderer: XYPlotRendererConfigSchema,
+            LinePlotRenderer: LinePlotRendererConfigSchema,
+        }),
+    }, { baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema, explicitlyTyped: true });
+}
+exports.default = WiggleConfigFactory;
+//# sourceMappingURL=configSchema.js.map

package/dist/LinearWiggleDisplay/models/configSchema.js.map

@@ -0,0 +1 @@
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package/dist/LinearWiggleDisplay/models/model.d.ts

@@ -81,11 +81,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     error: unknown;
 } & {
     readonly RenderingComponent: React.FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -100,11 +100,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         blockState?: Record<string, any> | undefined;
     }>;
     readonly DisplayBlurb: React.FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -190,7 +190,9 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         onClick: () => void;
     }[];
     renderProps(): any;
@@ -276,10 +278,10 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         overrideHeight: number;
     }): Promise<JSX.Element>;
 }, import("mobx-state-tree")._NotCustomized, {
-    id: string;
     type: string;
-    rpcDriverName: string | undefined;
     height: number;
+    id: string;
+    rpcDriverName: string | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;