@jbrowse/plugin-wiggle 1.7.11 → 2.0.0

package/dist/DensityRenderer/index.js

@@ -1,137 +1,156 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-Object.defineProperty(exports, "ReactComponent", {
-  enumerable: true,
-  get: function get() {
-    return _WiggleRendering.default;
-  }
-});
-exports.default = exports.configSchema = void 0;
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _util = require("@jbrowse/core/util");
-
-var _util2 = require("../util");
-
-var _configSchema = _interopRequireDefault(require("../configSchema"));
-
-var _WiggleBaseRenderer2 = _interopRequireDefault(require("../WiggleBaseRenderer"));
-
-var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
-
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
-
-function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
-
-function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
-  (0, _inherits2.default)(DensityRenderer, _WiggleBaseRenderer);
-
-  var _super = _createSuper(DensityRenderer);
-
-  function DensityRenderer() {
-    (0, _classCallCheck2.default)(this, DensityRenderer);
-    return _super.apply(this, arguments);
-  }
-
-  (0, _createClass2.default)(DensityRenderer, [{
-    key: "draw",
-    value: function draw(ctx, props) {
-      var features = props.features,
-          regions = props.regions,
-          bpPerPx = props.bpPerPx,
-          scaleOpts = props.scaleOpts,
-          height = props.height,
-          config = props.config;
-
-      var _regions = (0, _slicedToArray2.default)(regions, 1),
-          region = _regions[0];
-
-      var pivot = (0, _configuration.readConfObject)(config, 'bicolorPivot');
-      var pivotValue = (0, _configuration.readConfObject)(config, 'bicolorPivotValue');
-      var negColor = (0, _configuration.readConfObject)(config, 'negColor');
-      var posColor = (0, _configuration.readConfObject)(config, 'posColor');
-      var color = (0, _configuration.readConfObject)(config, 'color');
-      var colorCallback;
-
-      if (color === '#f0f') {
-        var colorScale = pivot !== 'none' ? (0, _util2.getScale)(_objectSpread(_objectSpread({}, scaleOpts), {}, {
-          pivotValue: pivotValue,
-          range: [negColor, 'white', posColor]
-        })) : (0, _util2.getScale)(_objectSpread(_objectSpread({}, scaleOpts), {}, {
-          range: ['white', posColor]
-        }));
-
-        colorCallback = function colorCallback(feature) {
-          return colorScale(feature.get('score'));
-        };
-      } else {
-        colorCallback = function colorCallback(feature) {
-          return (0, _configuration.readConfObject)(config, 'color', {
-            feature: feature
-          });
-        };
-      }
-
-      var _iterator = _createForOfIteratorHelper(features.values()),
-          _step;
-
-      try {
-        for (_iterator.s(); !(_step = _iterator.n()).done;) {
-          var feature = _step.value;
-
-          var _featureSpanPx = (0, _util.featureSpanPx)(feature, region, bpPerPx),
-              _featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
-              leftPx = _featureSpanPx2[0],
-              rightPx = _featureSpanPx2[1];
-
-          var w = rightPx - leftPx + 0.3; // fudge factor for subpixel rendering
-
-          ctx.fillStyle = colorCallback(feature);
-          ctx.fillRect(leftPx, 0, w, height);
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
         }
-      } catch (err) {
-        _iterator.e(err);
-      } finally {
-        _iterator.f();
-      }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
     }
-  }]);
-  return DensityRenderer;
-}(_WiggleBaseRenderer2.default);
-
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __values = (this && this.__values) || function(o) {
+    var s = typeof Symbol === "function" && Symbol.iterator, m = s && o[s], i = 0;
+    if (m) return m.call(o);
+    if (o && typeof o.length === "number") return {
+        next: function () {
+            if (o && i >= o.length) o = void 0;
+            return { value: o && o[i++], done: !o };
+        }
+    };
+    throw new TypeError(s ? "Object is not iterable." : "Symbol.iterator is not defined.");
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.configSchema = exports.ReactComponent = void 0;
+var configuration_1 = require("@jbrowse/core/configuration");
+var util_1 = require("@jbrowse/core/util");
+var util_2 = require("../util");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var WiggleRendering_1 = require("../WiggleRendering");
+Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleRendering_1).default; } });
+var DensityRenderer = /** @class */ (function (_super) {
+    __extends(DensityRenderer, _super);
+    function DensityRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    DensityRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            var features, regions, bpPerPx, scaleOpts, height, config, _a, region, pivot, pivotValue, negColor, posColor, color, colorCallback, colorScale_1, _b, _c, feature, _d, leftPx, rightPx, w;
+            var e_1, _e;
+            return __generator(this, function (_f) {
+                features = props.features, regions = props.regions, bpPerPx = props.bpPerPx, scaleOpts = props.scaleOpts, height = props.height, config = props.config;
+                _a = __read(regions, 1), region = _a[0];
+                pivot = (0, configuration_1.readConfObject)(config, 'bicolorPivot');
+                pivotValue = (0, configuration_1.readConfObject)(config, 'bicolorPivotValue');
+                negColor = (0, configuration_1.readConfObject)(config, 'negColor');
+                posColor = (0, configuration_1.readConfObject)(config, 'posColor');
+                color = (0, configuration_1.readConfObject)(config, 'color');
+                if (color === '#f0f') {
+                    colorScale_1 = pivot !== 'none'
+                        ? (0, util_2.getScale)(__assign(__assign({}, scaleOpts), { pivotValue: pivotValue, range: [negColor, 'white', posColor] }))
+                        : (0, util_2.getScale)(__assign(__assign({}, scaleOpts), { range: ['white', posColor] }));
+                    colorCallback = function (feature) { return colorScale_1(feature.get('score')); };
+                }
+                else {
+                    colorCallback = function (feature) {
+                        return (0, configuration_1.readConfObject)(config, 'color', { feature: feature });
+                    };
+                }
+                try {
+                    for (_b = __values(features.values()), _c = _b.next(); !_c.done; _c = _b.next()) {
+                        feature = _c.value;
+                        _d = __read((0, util_1.featureSpanPx)(feature, region, bpPerPx), 2), leftPx = _d[0], rightPx = _d[1];
+                        w = rightPx - leftPx + 0.3 // fudge factor for subpixel rendering
+                        ;
+                        ctx.fillStyle = colorCallback(feature);
+                        ctx.fillRect(leftPx, 0, w, height);
+                    }
+                }
+                catch (e_1_1) { e_1 = { error: e_1_1 }; }
+                finally {
+                    try {
+                        if (_c && !_c.done && (_e = _b.return)) _e.call(_b);
+                    }
+                    finally { if (e_1) throw e_1.error; }
+                }
+                return [2 /*return*/];
+            });
+        });
+    };
+    return DensityRenderer;
+}(WiggleBaseRenderer_1.default));
 exports.default = DensityRenderer;
-var configSchema = (0, _configuration.ConfigurationSchema)('DensityRenderer', {}, {
-  baseConfiguration: _configSchema.default,
-  explicitlyTyped: true
-});
-exports.configSchema = configSchema;
+exports.configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+//# sourceMappingURL=index.js.map

package/dist/DensityRenderer/index.js.map

@@ -0,0 +1 @@
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package/dist/LinePlotRenderer/LinePlotRenderer.d.ts

@@ -1,4 +1,4 @@
 export default class LinePlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: any, props: any): void;
+    draw(ctx: any, props: any): Promise<void>;
 }
 import WiggleBaseRenderer from "../WiggleBaseRenderer";