@jbrowse/plugin-wiggle 1.6.8 → 1.7.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (67) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +24 -24
  2. package/dist/BigWigAdapter/BigWigAdapter.js +288 -0
  3. package/dist/BigWigAdapter/BigWigAdapter.test.js +157 -0
  4. package/dist/BigWigAdapter/configSchema.d.ts +2 -2
  5. package/dist/BigWigAdapter/configSchema.js +22 -0
  6. package/dist/BigWigAdapter/index.d.ts +1 -1
  7. package/dist/BigWigAdapter/index.js +15 -0
  8. package/dist/DensityRenderer/DensityRenderer.test.js +84 -0
  9. package/dist/DensityRenderer/index.d.ts +6 -6
  10. package/dist/DensityRenderer/index.js +137 -0
  11. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -9
  12. package/dist/LinePlotRenderer/LinePlotRenderer.js +171 -0
  13. package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
  14. package/dist/LinePlotRenderer/configSchema.js +70 -0
  15. package/dist/LinePlotRenderer/index.d.ts +3 -3
  16. package/dist/LinePlotRenderer/index.js +34 -0
  17. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +10 -10
  18. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +111 -0
  19. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -11
  20. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +112 -0
  21. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +24 -24
  22. package/dist/LinearWiggleDisplay/components/Tooltip.js +167 -0
  23. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -8
  24. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +52 -0
  25. package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -7
  26. package/dist/LinearWiggleDisplay/components/YScaleBar.js +33 -0
  27. package/dist/LinearWiggleDisplay/index.d.ts +3 -3
  28. package/dist/LinearWiggleDisplay/index.js +43 -0
  29. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +2 -2
  30. package/dist/LinearWiggleDisplay/models/configSchema.js +71 -0
  31. package/dist/LinearWiggleDisplay/models/model.d.ts +288 -288
  32. package/dist/LinearWiggleDisplay/models/model.js +706 -0
  33. package/dist/WiggleBaseRenderer.d.ts +44 -42
  34. package/dist/WiggleBaseRenderer.js +131 -0
  35. package/dist/WiggleRPC/rpcMethods.d.ts +31 -31
  36. package/dist/WiggleRPC/rpcMethods.js +295 -0
  37. package/dist/WiggleRendering.d.ts +16 -16
  38. package/dist/WiggleRendering.js +109 -0
  39. package/dist/WiggleRendering.test.js +52 -0
  40. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -4
  41. package/dist/XYPlotRenderer/XYPlotRenderer.js +199 -0
  42. package/dist/XYPlotRenderer/XYPlotRenderer.test.js +83 -0
  43. package/dist/XYPlotRenderer/index.d.ts +3 -3
  44. package/dist/XYPlotRenderer/index.js +34 -0
  45. package/dist/configSchema.d.ts +2 -2
  46. package/dist/configSchema.js +75 -0
  47. package/dist/declare.d.js +1 -0
  48. package/dist/index.d.ts +866 -866
  49. package/dist/index.js +251 -6
  50. package/dist/index.test.js +24 -0
  51. package/dist/util.d.ts +41 -41
  52. package/dist/util.js +178 -0
  53. package/dist/util.test.js +66 -0
  54. package/package.json +4 -6
  55. package/src/LinearWiggleDisplay/models/model.tsx +2 -2
  56. package/src/WiggleBaseRenderer.tsx +1 -0
  57. package/dist/DensityRenderer/DensityRenderer.test.d.ts +0 -1
  58. package/dist/WiggleRendering.test.d.ts +0 -1
  59. package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts +0 -1
  60. package/dist/index.test.d.ts +0 -1
  61. package/dist/plugin-wiggle.cjs.development.js +0 -3556
  62. package/dist/plugin-wiggle.cjs.development.js.map +0 -1
  63. package/dist/plugin-wiggle.cjs.production.min.js +0 -2
  64. package/dist/plugin-wiggle.cjs.production.min.js.map +0 -1
  65. package/dist/plugin-wiggle.esm.js +0 -3541
  66. package/dist/plugin-wiggle.esm.js.map +0 -1
  67. package/dist/util.test.d.ts +0 -1
package/dist/index.d.ts CHANGED
@@ -1,866 +1,866 @@
1
- /// <reference types="react" />
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- import Plugin from '@jbrowse/core/Plugin';
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- import PluginManager from '@jbrowse/core/PluginManager';
4
- import WiggleBaseRenderer from './WiggleBaseRenderer';
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- import WiggleRendering from './WiggleRendering';
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- import * as utils from './util';
7
- import { modelFactory as linearWiggleDisplayModelFactory, ReactComponent as LinearWiggleDisplayReactComponent, YSCALEBAR_LABEL_OFFSET } from './LinearWiggleDisplay';
8
- import XYPlotRenderer from './XYPlotRenderer';
9
- export default class WigglePlugin extends Plugin {
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- name: string;
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- install(pluginManager: PluginManager): void;
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- exports: {
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- LinearWiggleDisplayReactComponent: (props: {
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- model: import("mobx-state-tree").ModelInstanceTypeProps<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
18
- } & {
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- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- key: import("mobx-state-tree").ISimpleType<string>;
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- region: import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
33
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- }, {
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- renderInProgress: AbortController | undefined;
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- filled: boolean;
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- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
39
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
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- status: string;
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- error: unknown;
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- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
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- model: any;
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- }) => any;
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- renderProps: any;
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- } & {
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- doReload(): void;
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- afterAttach(): void;
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- setStatus(message: string): void;
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- setLoading(abortController: AbortController): void;
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- setMessage(messageText: string): void;
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- setRendered(props: {
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- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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- features: Map<string, import("@jbrowse/core/util").Feature>;
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- layout: any;
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- maxHeightReached: boolean;
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- renderProps: any;
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- } | undefined): void;
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- setError(error: unknown): void;
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- reload(): void;
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- beforeDestroy(): void;
65
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
66
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
67
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
68
- } & {
69
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
70
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
71
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
72
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
76
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
77
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
78
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
79
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
80
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
81
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
82
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
83
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
84
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
85
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
86
- }> & {
87
- rendererTypeName: string;
88
- error: unknown;
89
- } & {
90
- readonly RenderingComponent: import("react").FC<{
91
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
92
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
- type: import("mobx-state-tree").ISimpleType<string>;
94
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
- }> & {
96
- rendererTypeName: string;
97
- error: unknown;
98
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
99
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
100
- type: import("mobx-state-tree").ISimpleType<string>;
101
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
102
- }, {
103
- rendererTypeName: string;
104
- error: unknown;
105
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
106
- onHorizontalScroll?: Function | undefined;
107
- blockState?: Record<string, any> | undefined;
108
- }>;
109
- readonly DisplayBlurb: import("react").FC<{
110
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
111
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
112
- type: import("mobx-state-tree").ISimpleType<string>;
113
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
114
- }> & {
115
- rendererTypeName: string;
116
- error: unknown;
117
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
118
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
119
- type: import("mobx-state-tree").ISimpleType<string>;
120
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
121
- }, {
122
- rendererTypeName: string;
123
- error: unknown;
124
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
125
- }> | null;
126
- readonly adapterConfig: any;
127
- readonly parentTrack: any;
128
- renderProps(): any;
129
- readonly rendererType: any;
130
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
131
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
132
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
133
- regionCannotBeRendered(): undefined;
134
- } & {
135
- setError(error?: unknown): void;
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- setRpcDriverName(rpcDriverName: string): void;
137
- reload(): void;
138
- } & {
139
- currBpPerPx: number;
140
- message: string;
141
- featureIdUnderMouse: string | undefined;
142
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
143
- scrollTop: number;
144
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
145
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
146
- } & {
147
- readonly blockType: "staticBlocks" | "dynamicBlocks";
148
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
149
- } & {
150
- readonly renderDelay: number;
151
- readonly TooltipComponent: import("react").FC<any>;
152
- readonly selectedFeatureId: string | undefined;
153
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
154
- } & {
155
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
156
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
157
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
158
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
159
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
160
- readonly currentBytesRequested: number;
161
- readonly currentFeatureScreenDensity: number;
162
- readonly maxFeatureScreenDensity: any;
163
- readonly estimatedStatsReady: boolean;
164
- readonly maxAllowableBytes: number;
165
- } & {
166
- setMessage(message: string): void;
167
- afterAttach(): void;
168
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
169
- headers?: Record<string, string> | undefined;
170
- signal?: AbortSignal | undefined;
171
- filters?: string[] | undefined;
172
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
173
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
174
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
175
- clearRegionStats(): void;
176
- setHeight(displayHeight: number): number;
177
- resizeHeight(distance: number): number;
178
- setScrollTop(scrollTop: number): void;
179
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
180
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
181
- setCurrBpPerPx(n: number): void;
182
- deleteBlock(key: string): void;
183
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
184
- clearFeatureSelection(): void;
185
- setFeatureIdUnderMouse(feature: string | undefined): void;
186
- reload(): void;
187
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
188
- } & {
189
- readonly regionTooLarge: boolean;
190
- readonly regionTooLargeReason: string;
191
- } & {
192
- reload(): Promise<void>;
193
- afterAttach(): void;
194
- } & {
195
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
196
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
197
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
198
- contextMenuItems(): {
199
- label: string;
200
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
201
- onClick: () => void;
202
- }[];
203
- renderProps(): any;
204
- } & {
205
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
206
- overrideHeight: number;
207
- }): Promise<JSX.Element>;
208
- } & {
209
- statsReady: boolean;
210
- message: string | undefined;
211
- stats: {
212
- scoreMin: number;
213
- scoreMax: number;
214
- };
215
- statsFetchInProgress: AbortController | undefined;
216
- } & {
217
- updateStats({ scoreMin, scoreMax, }: {
218
- scoreMin: number;
219
- scoreMax: number;
220
- }): void;
221
- setColor(color: string): void;
222
- setPosColor(color: string): void;
223
- setNegColor(color: string): void;
224
- setLoading(aborter: AbortController): void;
225
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
226
- setResolution(res: number): void;
227
- setFill(fill: boolean): void;
228
- toggleLogScale(): void;
229
- setScaleType(scale?: string | undefined): void;
230
- setSummaryScoreMode(val: string): void;
231
- setAutoscale(val: string): void;
232
- setMaxScore(val?: number | undefined): void;
233
- setRendererType(val: string): void;
234
- setMinScore(val?: number | undefined): void;
235
- toggleCrossHatches(): void;
236
- setCrossHatches(cross: boolean): void;
237
- } & {
238
- readonly TooltipComponent: import("react").FC<{}>;
239
- readonly adapterTypeName: any;
240
- readonly rendererTypeName: string;
241
- readonly filters: undefined;
242
- readonly scaleType: any;
243
- readonly maxScore: any;
244
- readonly minScore: any;
245
- } & {
246
- readonly rendererConfig: any;
247
- } & {
248
- readonly filled: any;
249
- readonly summaryScoreModeSetting: any;
250
- readonly domain: number[];
251
- readonly needsScalebar: boolean;
252
- readonly scaleOpts: {
253
- domain: number[];
254
- stats: {
255
- scoreMin: number;
256
- scoreMax: number;
257
- };
258
- autoscaleType: any;
259
- scaleType: any;
260
- inverted: any;
261
- };
262
- readonly canHaveFill: boolean;
263
- readonly autoscaleType: any;
264
- readonly displayCrossHatchesSetting: any;
265
- } & {
266
- readonly ticks: any;
267
- } & {
268
- renderProps(): any;
269
- readonly adapterCapabilities: string[];
270
- readonly hasResolution: boolean;
271
- readonly hasGlobalStats: boolean;
272
- } & {
273
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
274
- type: string;
275
- label: string;
276
- checked: any;
277
- onClick: () => void;
278
- })[];
279
- } & {
280
- reload(): Promise<void>;
281
- afterAttach(): void;
282
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
283
- overrideHeight: number;
284
- }): Promise<JSX.Element>;
285
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
286
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
287
- type: import("mobx-state-tree").ISimpleType<string>;
288
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
289
- } & {
290
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
291
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
292
- key: import("mobx-state-tree").ISimpleType<string>;
293
- region: import("mobx-state-tree").IModelType<{
294
- refName: import("mobx-state-tree").ISimpleType<string>;
295
- start: import("mobx-state-tree").ISimpleType<number>;
296
- end: import("mobx-state-tree").ISimpleType<number>;
297
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
298
- } & {
299
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
300
- }, {
301
- setRefName(newRefName: string): void;
302
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
303
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
304
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
305
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
306
- }, {
307
- renderInProgress: AbortController | undefined;
308
- filled: boolean;
309
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
310
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
311
- layout: any;
312
- status: string;
313
- error: unknown;
314
- message: string | undefined;
315
- maxHeightReached: boolean;
316
- ReactComponent: ({ model, }: {
317
- model: any;
318
- }) => any;
319
- renderProps: any;
320
- } & {
321
- doReload(): void;
322
- afterAttach(): void;
323
- setStatus(message: string): void;
324
- setLoading(abortController: AbortController): void;
325
- setMessage(messageText: string): void;
326
- setRendered(props: {
327
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
328
- features: Map<string, import("@jbrowse/core/util").Feature>;
329
- layout: any;
330
- maxHeightReached: boolean;
331
- renderProps: any;
332
- } | undefined): void;
333
- setError(error: unknown): void;
334
- reload(): void;
335
- beforeDestroy(): void;
336
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
337
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
338
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
339
- } & {
340
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
341
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
342
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
343
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
344
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
345
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
346
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
347
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
348
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
349
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
350
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
351
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
352
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
353
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
354
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
355
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
356
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
357
- }, {
358
- rendererTypeName: string;
359
- error: unknown;
360
- } & {
361
- readonly RenderingComponent: import("react").FC<{
362
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
363
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
364
- type: import("mobx-state-tree").ISimpleType<string>;
365
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
366
- }> & {
367
- rendererTypeName: string;
368
- error: unknown;
369
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
370
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
371
- type: import("mobx-state-tree").ISimpleType<string>;
372
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
373
- }, {
374
- rendererTypeName: string;
375
- error: unknown;
376
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
377
- onHorizontalScroll?: Function | undefined;
378
- blockState?: Record<string, any> | undefined;
379
- }>;
380
- readonly DisplayBlurb: import("react").FC<{
381
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
382
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
383
- type: import("mobx-state-tree").ISimpleType<string>;
384
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
385
- }> & {
386
- rendererTypeName: string;
387
- error: unknown;
388
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
389
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
390
- type: import("mobx-state-tree").ISimpleType<string>;
391
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
392
- }, {
393
- rendererTypeName: string;
394
- error: unknown;
395
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
396
- }> | null;
397
- readonly adapterConfig: any;
398
- readonly parentTrack: any;
399
- renderProps(): any;
400
- readonly rendererType: any;
401
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
402
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
403
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
404
- regionCannotBeRendered(): undefined;
405
- } & {
406
- setError(error?: unknown): void;
407
- setRpcDriverName(rpcDriverName: string): void;
408
- reload(): void;
409
- } & {
410
- currBpPerPx: number;
411
- message: string;
412
- featureIdUnderMouse: string | undefined;
413
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
414
- scrollTop: number;
415
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
416
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
417
- } & {
418
- readonly blockType: "staticBlocks" | "dynamicBlocks";
419
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
420
- } & {
421
- readonly renderDelay: number;
422
- readonly TooltipComponent: import("react").FC<any>;
423
- readonly selectedFeatureId: string | undefined;
424
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
425
- } & {
426
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
427
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
428
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
429
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
430
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
431
- readonly currentBytesRequested: number;
432
- readonly currentFeatureScreenDensity: number;
433
- readonly maxFeatureScreenDensity: any;
434
- readonly estimatedStatsReady: boolean;
435
- readonly maxAllowableBytes: number;
436
- } & {
437
- setMessage(message: string): void;
438
- afterAttach(): void;
439
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
440
- headers?: Record<string, string> | undefined;
441
- signal?: AbortSignal | undefined;
442
- filters?: string[] | undefined;
443
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
444
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
445
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
446
- clearRegionStats(): void;
447
- setHeight(displayHeight: number): number;
448
- resizeHeight(distance: number): number;
449
- setScrollTop(scrollTop: number): void;
450
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
451
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
452
- setCurrBpPerPx(n: number): void;
453
- deleteBlock(key: string): void;
454
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
455
- clearFeatureSelection(): void;
456
- setFeatureIdUnderMouse(feature: string | undefined): void;
457
- reload(): void;
458
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
459
- } & {
460
- readonly regionTooLarge: boolean;
461
- readonly regionTooLargeReason: string;
462
- } & {
463
- reload(): Promise<void>;
464
- afterAttach(): void;
465
- } & {
466
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
467
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
468
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
469
- contextMenuItems(): {
470
- label: string;
471
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
472
- onClick: () => void;
473
- }[];
474
- renderProps(): any;
475
- } & {
476
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
477
- overrideHeight: number;
478
- }): Promise<JSX.Element>;
479
- } & {
480
- statsReady: boolean;
481
- message: string | undefined;
482
- stats: {
483
- scoreMin: number;
484
- scoreMax: number;
485
- };
486
- statsFetchInProgress: AbortController | undefined;
487
- } & {
488
- updateStats({ scoreMin, scoreMax, }: {
489
- scoreMin: number;
490
- scoreMax: number;
491
- }): void;
492
- setColor(color: string): void;
493
- setPosColor(color: string): void;
494
- setNegColor(color: string): void;
495
- setLoading(aborter: AbortController): void;
496
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
497
- setResolution(res: number): void;
498
- setFill(fill: boolean): void;
499
- toggleLogScale(): void;
500
- setScaleType(scale?: string | undefined): void;
501
- setSummaryScoreMode(val: string): void;
502
- setAutoscale(val: string): void;
503
- setMaxScore(val?: number | undefined): void;
504
- setRendererType(val: string): void;
505
- setMinScore(val?: number | undefined): void;
506
- toggleCrossHatches(): void;
507
- setCrossHatches(cross: boolean): void;
508
- } & {
509
- readonly TooltipComponent: import("react").FC<{}>;
510
- readonly adapterTypeName: any;
511
- readonly rendererTypeName: string;
512
- readonly filters: undefined;
513
- readonly scaleType: any;
514
- readonly maxScore: any;
515
- readonly minScore: any;
516
- } & {
517
- readonly rendererConfig: any;
518
- } & {
519
- readonly filled: any;
520
- readonly summaryScoreModeSetting: any;
521
- readonly domain: number[];
522
- readonly needsScalebar: boolean;
523
- readonly scaleOpts: {
524
- domain: number[];
525
- stats: {
526
- scoreMin: number;
527
- scoreMax: number;
528
- };
529
- autoscaleType: any;
530
- scaleType: any;
531
- inverted: any;
532
- };
533
- readonly canHaveFill: boolean;
534
- readonly autoscaleType: any;
535
- readonly displayCrossHatchesSetting: any;
536
- } & {
537
- readonly ticks: any;
538
- } & {
539
- renderProps(): any;
540
- readonly adapterCapabilities: string[];
541
- readonly hasResolution: boolean;
542
- readonly hasGlobalStats: boolean;
543
- } & {
544
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
545
- type: string;
546
- label: string;
547
- checked: any;
548
- onClick: () => void;
549
- })[];
550
- } & {
551
- reload(): Promise<void>;
552
- afterAttach(): void;
553
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
554
- overrideHeight: number;
555
- }): Promise<JSX.Element>;
556
- }, import("mobx-state-tree")._NotCustomized, {
557
- id: string;
558
- type: string;
559
- rpcDriverName: string | undefined;
560
- height: number;
561
- userBpPerPxLimit: number | undefined;
562
- userByteSizeLimit: number | undefined;
563
- } & import("mobx-state-tree")._NotCustomized>>;
564
- }) => JSX.Element;
565
- XYPlotRendererReactComponent: (props: {
566
- regions: import("@jbrowse/core/util/types").Region[];
567
- features: Map<string, import("@jbrowse/core/util").Feature>;
568
- bpPerPx: number;
569
- width: number;
570
- height: number;
571
- onMouseLeave: Function;
572
- onMouseMove: Function;
573
- onFeatureClick: Function;
574
- blockKey: string;
575
- }) => JSX.Element;
576
- XYPlotRenderer: typeof XYPlotRenderer;
577
- xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
578
- utils: typeof utils;
579
- WiggleBaseRenderer: typeof WiggleBaseRenderer;
580
- linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
581
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
582
- type: import("mobx-state-tree").ISimpleType<string>;
583
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
584
- } & {
585
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
586
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
587
- key: import("mobx-state-tree").ISimpleType<string>;
588
- region: import("mobx-state-tree").IModelType<{
589
- refName: import("mobx-state-tree").ISimpleType<string>;
590
- start: import("mobx-state-tree").ISimpleType<number>;
591
- end: import("mobx-state-tree").ISimpleType<number>;
592
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
593
- } & {
594
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
595
- }, {
596
- setRefName(newRefName: string): void;
597
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
598
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
599
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
600
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
601
- }, {
602
- renderInProgress: AbortController | undefined;
603
- filled: boolean;
604
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
605
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
606
- layout: any;
607
- status: string;
608
- error: unknown;
609
- message: string | undefined;
610
- maxHeightReached: boolean;
611
- ReactComponent: ({ model, }: {
612
- model: any;
613
- }) => any;
614
- renderProps: any;
615
- } & {
616
- doReload(): void;
617
- afterAttach(): void;
618
- setStatus(message: string): void;
619
- setLoading(abortController: AbortController): void;
620
- setMessage(messageText: string): void;
621
- setRendered(props: {
622
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
623
- features: Map<string, import("@jbrowse/core/util").Feature>;
624
- layout: any;
625
- maxHeightReached: boolean;
626
- renderProps: any;
627
- } | undefined): void;
628
- setError(error: unknown): void;
629
- reload(): void;
630
- beforeDestroy(): void;
631
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
632
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
633
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
634
- } & {
635
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
636
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
637
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
638
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
639
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
640
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
641
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
642
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
643
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
644
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
645
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
646
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
647
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
648
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
649
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
650
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
651
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
652
- }, {
653
- rendererTypeName: string;
654
- error: unknown;
655
- } & {
656
- readonly RenderingComponent: import("react").FC<{
657
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
658
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
659
- type: import("mobx-state-tree").ISimpleType<string>;
660
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
661
- }> & {
662
- rendererTypeName: string;
663
- error: unknown;
664
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
665
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
666
- type: import("mobx-state-tree").ISimpleType<string>;
667
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
668
- }, {
669
- rendererTypeName: string;
670
- error: unknown;
671
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
672
- onHorizontalScroll?: Function | undefined;
673
- blockState?: Record<string, any> | undefined;
674
- }>;
675
- readonly DisplayBlurb: import("react").FC<{
676
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
677
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
678
- type: import("mobx-state-tree").ISimpleType<string>;
679
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
680
- }> & {
681
- rendererTypeName: string;
682
- error: unknown;
683
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
684
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
685
- type: import("mobx-state-tree").ISimpleType<string>;
686
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
687
- }, {
688
- rendererTypeName: string;
689
- error: unknown;
690
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
691
- }> | null;
692
- readonly adapterConfig: any;
693
- readonly parentTrack: any;
694
- renderProps(): any;
695
- readonly rendererType: any;
696
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
697
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
698
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
699
- regionCannotBeRendered(): undefined;
700
- } & {
701
- setError(error?: unknown): void;
702
- setRpcDriverName(rpcDriverName: string): void;
703
- reload(): void;
704
- } & {
705
- currBpPerPx: number;
706
- message: string;
707
- featureIdUnderMouse: string | undefined;
708
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
709
- scrollTop: number;
710
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
711
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
712
- } & {
713
- readonly blockType: "staticBlocks" | "dynamicBlocks";
714
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
715
- } & {
716
- readonly renderDelay: number;
717
- readonly TooltipComponent: import("react").FC<any>;
718
- readonly selectedFeatureId: string | undefined;
719
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
720
- } & {
721
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
722
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
723
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
724
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
725
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
726
- readonly currentBytesRequested: number;
727
- readonly currentFeatureScreenDensity: number;
728
- readonly maxFeatureScreenDensity: any;
729
- readonly estimatedStatsReady: boolean;
730
- readonly maxAllowableBytes: number;
731
- } & {
732
- setMessage(message: string): void;
733
- afterAttach(): void;
734
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
735
- headers?: Record<string, string> | undefined;
736
- signal?: AbortSignal | undefined;
737
- filters?: string[] | undefined;
738
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
739
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
740
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
741
- clearRegionStats(): void;
742
- setHeight(displayHeight: number): number;
743
- resizeHeight(distance: number): number;
744
- setScrollTop(scrollTop: number): void;
745
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
746
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
747
- setCurrBpPerPx(n: number): void;
748
- deleteBlock(key: string): void;
749
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
750
- clearFeatureSelection(): void;
751
- setFeatureIdUnderMouse(feature: string | undefined): void;
752
- reload(): void;
753
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
754
- } & {
755
- readonly regionTooLarge: boolean;
756
- readonly regionTooLargeReason: string;
757
- } & {
758
- reload(): Promise<void>;
759
- afterAttach(): void;
760
- } & {
761
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
762
- regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
763
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
764
- contextMenuItems(): {
765
- label: string;
766
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
767
- onClick: () => void;
768
- }[];
769
- renderProps(): any;
770
- } & {
771
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
772
- overrideHeight: number;
773
- }): Promise<JSX.Element>;
774
- } & {
775
- statsReady: boolean;
776
- message: string | undefined;
777
- stats: {
778
- scoreMin: number;
779
- scoreMax: number;
780
- };
781
- statsFetchInProgress: AbortController | undefined;
782
- } & {
783
- updateStats({ scoreMin, scoreMax, }: {
784
- scoreMin: number;
785
- scoreMax: number;
786
- }): void;
787
- setColor(color: string): void;
788
- setPosColor(color: string): void;
789
- setNegColor(color: string): void;
790
- setLoading(aborter: AbortController): void;
791
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
792
- setResolution(res: number): void;
793
- setFill(fill: boolean): void;
794
- toggleLogScale(): void;
795
- setScaleType(scale?: string | undefined): void;
796
- setSummaryScoreMode(val: string): void;
797
- setAutoscale(val: string): void;
798
- setMaxScore(val?: number | undefined): void;
799
- setRendererType(val: string): void;
800
- setMinScore(val?: number | undefined): void;
801
- toggleCrossHatches(): void;
802
- setCrossHatches(cross: boolean): void;
803
- } & {
804
- readonly TooltipComponent: import("react").FC<{}>;
805
- readonly adapterTypeName: any;
806
- readonly rendererTypeName: string;
807
- readonly filters: undefined;
808
- readonly scaleType: any;
809
- readonly maxScore: any;
810
- readonly minScore: any;
811
- } & {
812
- readonly rendererConfig: any;
813
- } & {
814
- readonly filled: any;
815
- readonly summaryScoreModeSetting: any;
816
- readonly domain: number[];
817
- readonly needsScalebar: boolean;
818
- readonly scaleOpts: {
819
- domain: number[];
820
- stats: {
821
- scoreMin: number;
822
- scoreMax: number;
823
- };
824
- autoscaleType: any;
825
- scaleType: any;
826
- inverted: any;
827
- };
828
- readonly canHaveFill: boolean;
829
- readonly autoscaleType: any;
830
- readonly displayCrossHatchesSetting: any;
831
- } & {
832
- readonly ticks: any;
833
- } & {
834
- renderProps(): any;
835
- readonly adapterCapabilities: string[];
836
- readonly hasResolution: boolean;
837
- readonly hasGlobalStats: boolean;
838
- } & {
839
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
840
- type: string;
841
- label: string;
842
- checked: any;
843
- onClick: () => void;
844
- })[];
845
- } & {
846
- reload(): Promise<void>;
847
- afterAttach(): void;
848
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
849
- overrideHeight: number;
850
- }): Promise<JSX.Element>;
851
- }, import("mobx-state-tree")._NotCustomized, {
852
- id: string;
853
- type: string;
854
- rpcDriverName: string | undefined;
855
- height: number;
856
- userBpPerPxLimit: number | undefined;
857
- userByteSizeLimit: number | undefined;
858
- } & import("mobx-state-tree")._NotCustomized>;
859
- };
860
- }
861
- export * from './util';
862
- export { WiggleRendering };
863
- export { WiggleBaseRenderer };
864
- export { LinearWiggleDisplayReactComponent, linearWiggleDisplayModelFactory };
865
- export { Tooltip } from './LinearWiggleDisplay/components/Tooltip';
866
- export { YSCALEBAR_LABEL_OFFSET };
1
+ /// <reference types="react" />
2
+ import Plugin from '@jbrowse/core/Plugin';
3
+ import PluginManager from '@jbrowse/core/PluginManager';
4
+ import WiggleBaseRenderer from './WiggleBaseRenderer';
5
+ import WiggleRendering from './WiggleRendering';
6
+ import * as utils from './util';
7
+ import { modelFactory as linearWiggleDisplayModelFactory, ReactComponent as LinearWiggleDisplayReactComponent, YSCALEBAR_LABEL_OFFSET } from './LinearWiggleDisplay';
8
+ import XYPlotRenderer from './XYPlotRenderer';
9
+ export default class WigglePlugin extends Plugin {
10
+ name: string;
11
+ install(pluginManager: PluginManager): void;
12
+ exports: {
13
+ LinearWiggleDisplayReactComponent: (props: {
14
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
15
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
16
+ type: import("mobx-state-tree").ISimpleType<string>;
17
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
18
+ } & {
19
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
20
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
21
+ key: import("mobx-state-tree").ISimpleType<string>;
22
+ region: import("mobx-state-tree").IModelType<{
23
+ refName: import("mobx-state-tree").ISimpleType<string>;
24
+ start: import("mobx-state-tree").ISimpleType<number>;
25
+ end: import("mobx-state-tree").ISimpleType<number>;
26
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
27
+ } & {
28
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
29
+ }, {
30
+ setRefName(newRefName: string): void;
31
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
32
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
33
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
34
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
35
+ }, {
36
+ renderInProgress: AbortController | undefined;
37
+ filled: boolean;
38
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
39
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
40
+ layout: any;
41
+ status: string;
42
+ error: unknown;
43
+ message: string | undefined;
44
+ maxHeightReached: boolean;
45
+ ReactComponent: ({ model, }: {
46
+ model: any;
47
+ }) => any;
48
+ renderProps: any;
49
+ } & {
50
+ doReload(): void;
51
+ afterAttach(): void;
52
+ setStatus(message: string): void;
53
+ setLoading(abortController: AbortController): void;
54
+ setMessage(messageText: string): void;
55
+ setRendered(props: {
56
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
57
+ features: Map<string, import("@jbrowse/core/util").Feature>;
58
+ layout: any;
59
+ maxHeightReached: boolean;
60
+ renderProps: any;
61
+ } | undefined): void;
62
+ setError(error: unknown): void;
63
+ reload(): void;
64
+ beforeDestroy(): void;
65
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
66
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
67
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
68
+ } & {
69
+ type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
70
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
71
+ selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
72
+ resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
73
+ fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
74
+ color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
+ posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
76
+ negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
77
+ summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
78
+ rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
79
+ scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
80
+ autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
81
+ displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
82
+ constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
83
+ max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
84
+ min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
85
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
86
+ }> & {
87
+ rendererTypeName: string;
88
+ error: unknown;
89
+ } & {
90
+ readonly RenderingComponent: import("react").FC<{
91
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
92
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
+ type: import("mobx-state-tree").ISimpleType<string>;
94
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
+ }> & {
96
+ rendererTypeName: string;
97
+ error: unknown;
98
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
99
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
100
+ type: import("mobx-state-tree").ISimpleType<string>;
101
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
102
+ }, {
103
+ rendererTypeName: string;
104
+ error: unknown;
105
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
106
+ onHorizontalScroll?: Function | undefined;
107
+ blockState?: Record<string, any> | undefined;
108
+ }>;
109
+ readonly DisplayBlurb: import("react").FC<{
110
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
111
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
112
+ type: import("mobx-state-tree").ISimpleType<string>;
113
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
114
+ }> & {
115
+ rendererTypeName: string;
116
+ error: unknown;
117
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
118
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
119
+ type: import("mobx-state-tree").ISimpleType<string>;
120
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
121
+ }, {
122
+ rendererTypeName: string;
123
+ error: unknown;
124
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
125
+ }> | null;
126
+ readonly adapterConfig: any;
127
+ readonly parentTrack: any;
128
+ renderProps(): any;
129
+ readonly rendererType: any;
130
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
131
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
132
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
133
+ regionCannotBeRendered(): undefined;
134
+ } & {
135
+ setError(error?: unknown): void;
136
+ setRpcDriverName(rpcDriverName: string): void;
137
+ reload(): void;
138
+ } & {
139
+ currBpPerPx: number;
140
+ message: string;
141
+ featureIdUnderMouse: string | undefined;
142
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
143
+ scrollTop: number;
144
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
145
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
146
+ } & {
147
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
148
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
149
+ } & {
150
+ readonly renderDelay: number;
151
+ readonly TooltipComponent: import("react").FC<any>;
152
+ readonly selectedFeatureId: string | undefined;
153
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
154
+ } & {
155
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
156
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
157
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
158
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
159
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
160
+ readonly currentBytesRequested: number;
161
+ readonly currentFeatureScreenDensity: number;
162
+ readonly maxFeatureScreenDensity: any;
163
+ readonly estimatedStatsReady: boolean;
164
+ readonly maxAllowableBytes: number;
165
+ } & {
166
+ setMessage(message: string): void;
167
+ afterAttach(): void;
168
+ estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
169
+ headers?: Record<string, string> | undefined;
170
+ signal?: AbortSignal | undefined;
171
+ filters?: string[] | undefined;
172
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
173
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
174
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
175
+ clearRegionStats(): void;
176
+ setHeight(displayHeight: number): number;
177
+ resizeHeight(distance: number): number;
178
+ setScrollTop(scrollTop: number): void;
179
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
180
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
181
+ setCurrBpPerPx(n: number): void;
182
+ deleteBlock(key: string): void;
183
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
184
+ clearFeatureSelection(): void;
185
+ setFeatureIdUnderMouse(feature: string | undefined): void;
186
+ reload(): void;
187
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
188
+ } & {
189
+ readonly regionTooLarge: boolean;
190
+ readonly regionTooLargeReason: string;
191
+ } & {
192
+ reload(): Promise<void>;
193
+ afterAttach(): void;
194
+ } & {
195
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
196
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
197
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
198
+ contextMenuItems(): {
199
+ label: string;
200
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
201
+ onClick: () => void;
202
+ }[];
203
+ renderProps(): any;
204
+ } & {
205
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
206
+ overrideHeight: number;
207
+ }): Promise<JSX.Element>;
208
+ } & {
209
+ statsReady: boolean;
210
+ message: string | undefined;
211
+ stats: {
212
+ scoreMin: number;
213
+ scoreMax: number;
214
+ };
215
+ statsFetchInProgress: AbortController | undefined;
216
+ } & {
217
+ updateStats({ scoreMin, scoreMax, }: {
218
+ scoreMin: number;
219
+ scoreMax: number;
220
+ }): void;
221
+ setColor(color: string): void;
222
+ setPosColor(color: string): void;
223
+ setNegColor(color: string): void;
224
+ setLoading(aborter: AbortController): void;
225
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
226
+ setResolution(res: number): void;
227
+ setFill(fill: boolean): void;
228
+ toggleLogScale(): void;
229
+ setScaleType(scale?: string | undefined): void;
230
+ setSummaryScoreMode(val: string): void;
231
+ setAutoscale(val: string): void;
232
+ setMaxScore(val?: number | undefined): void;
233
+ setRendererType(val: string): void;
234
+ setMinScore(val?: number | undefined): void;
235
+ toggleCrossHatches(): void;
236
+ setCrossHatches(cross: boolean): void;
237
+ } & {
238
+ readonly TooltipComponent: import("react").FC<{}>;
239
+ readonly adapterTypeName: any;
240
+ readonly rendererTypeName: string;
241
+ readonly filters: undefined;
242
+ readonly scaleType: any;
243
+ readonly maxScore: any;
244
+ readonly minScore: any;
245
+ } & {
246
+ readonly rendererConfig: any;
247
+ } & {
248
+ readonly filled: any;
249
+ readonly summaryScoreModeSetting: any;
250
+ readonly domain: number[];
251
+ readonly needsScalebar: boolean;
252
+ readonly scaleOpts: {
253
+ domain: number[];
254
+ stats: {
255
+ scoreMin: number;
256
+ scoreMax: number;
257
+ };
258
+ autoscaleType: any;
259
+ scaleType: any;
260
+ inverted: any;
261
+ };
262
+ readonly canHaveFill: boolean;
263
+ readonly autoscaleType: any;
264
+ readonly displayCrossHatchesSetting: any;
265
+ } & {
266
+ readonly ticks: any;
267
+ } & {
268
+ renderProps(): any;
269
+ readonly adapterCapabilities: string[];
270
+ readonly hasResolution: boolean;
271
+ readonly hasGlobalStats: boolean;
272
+ } & {
273
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
274
+ type: string;
275
+ label: string;
276
+ checked: any;
277
+ onClick: () => void;
278
+ })[];
279
+ } & {
280
+ reload(): Promise<void>;
281
+ afterAttach(): void;
282
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
283
+ overrideHeight: number;
284
+ }): Promise<JSX.Element>;
285
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
286
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
287
+ type: import("mobx-state-tree").ISimpleType<string>;
288
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
289
+ } & {
290
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
291
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
292
+ key: import("mobx-state-tree").ISimpleType<string>;
293
+ region: import("mobx-state-tree").IModelType<{
294
+ refName: import("mobx-state-tree").ISimpleType<string>;
295
+ start: import("mobx-state-tree").ISimpleType<number>;
296
+ end: import("mobx-state-tree").ISimpleType<number>;
297
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
298
+ } & {
299
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
300
+ }, {
301
+ setRefName(newRefName: string): void;
302
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
303
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
304
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
305
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
306
+ }, {
307
+ renderInProgress: AbortController | undefined;
308
+ filled: boolean;
309
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
310
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
311
+ layout: any;
312
+ status: string;
313
+ error: unknown;
314
+ message: string | undefined;
315
+ maxHeightReached: boolean;
316
+ ReactComponent: ({ model, }: {
317
+ model: any;
318
+ }) => any;
319
+ renderProps: any;
320
+ } & {
321
+ doReload(): void;
322
+ afterAttach(): void;
323
+ setStatus(message: string): void;
324
+ setLoading(abortController: AbortController): void;
325
+ setMessage(messageText: string): void;
326
+ setRendered(props: {
327
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
328
+ features: Map<string, import("@jbrowse/core/util").Feature>;
329
+ layout: any;
330
+ maxHeightReached: boolean;
331
+ renderProps: any;
332
+ } | undefined): void;
333
+ setError(error: unknown): void;
334
+ reload(): void;
335
+ beforeDestroy(): void;
336
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
337
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
338
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
339
+ } & {
340
+ type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
341
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
342
+ selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
343
+ resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
344
+ fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
345
+ color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
346
+ posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
347
+ negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
348
+ summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
349
+ rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
350
+ scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
351
+ autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
352
+ displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
353
+ constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
354
+ max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
355
+ min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
356
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
357
+ }, {
358
+ rendererTypeName: string;
359
+ error: unknown;
360
+ } & {
361
+ readonly RenderingComponent: import("react").FC<{
362
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
363
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
364
+ type: import("mobx-state-tree").ISimpleType<string>;
365
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
366
+ }> & {
367
+ rendererTypeName: string;
368
+ error: unknown;
369
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
370
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
371
+ type: import("mobx-state-tree").ISimpleType<string>;
372
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
373
+ }, {
374
+ rendererTypeName: string;
375
+ error: unknown;
376
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
377
+ onHorizontalScroll?: Function | undefined;
378
+ blockState?: Record<string, any> | undefined;
379
+ }>;
380
+ readonly DisplayBlurb: import("react").FC<{
381
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
382
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
383
+ type: import("mobx-state-tree").ISimpleType<string>;
384
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
385
+ }> & {
386
+ rendererTypeName: string;
387
+ error: unknown;
388
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
389
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
390
+ type: import("mobx-state-tree").ISimpleType<string>;
391
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
392
+ }, {
393
+ rendererTypeName: string;
394
+ error: unknown;
395
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
396
+ }> | null;
397
+ readonly adapterConfig: any;
398
+ readonly parentTrack: any;
399
+ renderProps(): any;
400
+ readonly rendererType: any;
401
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
402
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
403
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
404
+ regionCannotBeRendered(): undefined;
405
+ } & {
406
+ setError(error?: unknown): void;
407
+ setRpcDriverName(rpcDriverName: string): void;
408
+ reload(): void;
409
+ } & {
410
+ currBpPerPx: number;
411
+ message: string;
412
+ featureIdUnderMouse: string | undefined;
413
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
414
+ scrollTop: number;
415
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
416
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
417
+ } & {
418
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
419
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
420
+ } & {
421
+ readonly renderDelay: number;
422
+ readonly TooltipComponent: import("react").FC<any>;
423
+ readonly selectedFeatureId: string | undefined;
424
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
425
+ } & {
426
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
427
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
428
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
429
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
430
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
431
+ readonly currentBytesRequested: number;
432
+ readonly currentFeatureScreenDensity: number;
433
+ readonly maxFeatureScreenDensity: any;
434
+ readonly estimatedStatsReady: boolean;
435
+ readonly maxAllowableBytes: number;
436
+ } & {
437
+ setMessage(message: string): void;
438
+ afterAttach(): void;
439
+ estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
440
+ headers?: Record<string, string> | undefined;
441
+ signal?: AbortSignal | undefined;
442
+ filters?: string[] | undefined;
443
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
444
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
445
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
446
+ clearRegionStats(): void;
447
+ setHeight(displayHeight: number): number;
448
+ resizeHeight(distance: number): number;
449
+ setScrollTop(scrollTop: number): void;
450
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
451
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
452
+ setCurrBpPerPx(n: number): void;
453
+ deleteBlock(key: string): void;
454
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
455
+ clearFeatureSelection(): void;
456
+ setFeatureIdUnderMouse(feature: string | undefined): void;
457
+ reload(): void;
458
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
459
+ } & {
460
+ readonly regionTooLarge: boolean;
461
+ readonly regionTooLargeReason: string;
462
+ } & {
463
+ reload(): Promise<void>;
464
+ afterAttach(): void;
465
+ } & {
466
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
467
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
468
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
469
+ contextMenuItems(): {
470
+ label: string;
471
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
472
+ onClick: () => void;
473
+ }[];
474
+ renderProps(): any;
475
+ } & {
476
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
477
+ overrideHeight: number;
478
+ }): Promise<JSX.Element>;
479
+ } & {
480
+ statsReady: boolean;
481
+ message: string | undefined;
482
+ stats: {
483
+ scoreMin: number;
484
+ scoreMax: number;
485
+ };
486
+ statsFetchInProgress: AbortController | undefined;
487
+ } & {
488
+ updateStats({ scoreMin, scoreMax, }: {
489
+ scoreMin: number;
490
+ scoreMax: number;
491
+ }): void;
492
+ setColor(color: string): void;
493
+ setPosColor(color: string): void;
494
+ setNegColor(color: string): void;
495
+ setLoading(aborter: AbortController): void;
496
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
497
+ setResolution(res: number): void;
498
+ setFill(fill: boolean): void;
499
+ toggleLogScale(): void;
500
+ setScaleType(scale?: string | undefined): void;
501
+ setSummaryScoreMode(val: string): void;
502
+ setAutoscale(val: string): void;
503
+ setMaxScore(val?: number | undefined): void;
504
+ setRendererType(val: string): void;
505
+ setMinScore(val?: number | undefined): void;
506
+ toggleCrossHatches(): void;
507
+ setCrossHatches(cross: boolean): void;
508
+ } & {
509
+ readonly TooltipComponent: import("react").FC<{}>;
510
+ readonly adapterTypeName: any;
511
+ readonly rendererTypeName: string;
512
+ readonly filters: undefined;
513
+ readonly scaleType: any;
514
+ readonly maxScore: any;
515
+ readonly minScore: any;
516
+ } & {
517
+ readonly rendererConfig: any;
518
+ } & {
519
+ readonly filled: any;
520
+ readonly summaryScoreModeSetting: any;
521
+ readonly domain: number[];
522
+ readonly needsScalebar: boolean;
523
+ readonly scaleOpts: {
524
+ domain: number[];
525
+ stats: {
526
+ scoreMin: number;
527
+ scoreMax: number;
528
+ };
529
+ autoscaleType: any;
530
+ scaleType: any;
531
+ inverted: any;
532
+ };
533
+ readonly canHaveFill: boolean;
534
+ readonly autoscaleType: any;
535
+ readonly displayCrossHatchesSetting: any;
536
+ } & {
537
+ readonly ticks: any;
538
+ } & {
539
+ renderProps(): any;
540
+ readonly adapterCapabilities: string[];
541
+ readonly hasResolution: boolean;
542
+ readonly hasGlobalStats: boolean;
543
+ } & {
544
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
545
+ type: string;
546
+ label: string;
547
+ checked: any;
548
+ onClick: () => void;
549
+ })[];
550
+ } & {
551
+ reload(): Promise<void>;
552
+ afterAttach(): void;
553
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
554
+ overrideHeight: number;
555
+ }): Promise<JSX.Element>;
556
+ }, import("mobx-state-tree")._NotCustomized, {
557
+ id: string;
558
+ type: string;
559
+ rpcDriverName: string | undefined;
560
+ height: number;
561
+ userBpPerPxLimit: number | undefined;
562
+ userByteSizeLimit: number | undefined;
563
+ } & import("mobx-state-tree")._NotCustomized>>;
564
+ }) => JSX.Element;
565
+ XYPlotRendererReactComponent: (props: {
566
+ regions: import("@jbrowse/core/util/types").Region[];
567
+ features: Map<string, import("@jbrowse/core/util").Feature>;
568
+ bpPerPx: number;
569
+ width: number;
570
+ height: number;
571
+ onMouseLeave: Function;
572
+ onMouseMove: Function;
573
+ onFeatureClick: Function;
574
+ blockKey: string;
575
+ }) => JSX.Element;
576
+ XYPlotRenderer: typeof XYPlotRenderer;
577
+ xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
578
+ utils: typeof utils;
579
+ WiggleBaseRenderer: typeof WiggleBaseRenderer;
580
+ linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
581
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
582
+ type: import("mobx-state-tree").ISimpleType<string>;
583
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
584
+ } & {
585
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
586
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
587
+ key: import("mobx-state-tree").ISimpleType<string>;
588
+ region: import("mobx-state-tree").IModelType<{
589
+ refName: import("mobx-state-tree").ISimpleType<string>;
590
+ start: import("mobx-state-tree").ISimpleType<number>;
591
+ end: import("mobx-state-tree").ISimpleType<number>;
592
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
593
+ } & {
594
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
595
+ }, {
596
+ setRefName(newRefName: string): void;
597
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
598
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
599
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
600
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
601
+ }, {
602
+ renderInProgress: AbortController | undefined;
603
+ filled: boolean;
604
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
605
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
606
+ layout: any;
607
+ status: string;
608
+ error: unknown;
609
+ message: string | undefined;
610
+ maxHeightReached: boolean;
611
+ ReactComponent: ({ model, }: {
612
+ model: any;
613
+ }) => any;
614
+ renderProps: any;
615
+ } & {
616
+ doReload(): void;
617
+ afterAttach(): void;
618
+ setStatus(message: string): void;
619
+ setLoading(abortController: AbortController): void;
620
+ setMessage(messageText: string): void;
621
+ setRendered(props: {
622
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
623
+ features: Map<string, import("@jbrowse/core/util").Feature>;
624
+ layout: any;
625
+ maxHeightReached: boolean;
626
+ renderProps: any;
627
+ } | undefined): void;
628
+ setError(error: unknown): void;
629
+ reload(): void;
630
+ beforeDestroy(): void;
631
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
632
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
633
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
634
+ } & {
635
+ type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
636
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
637
+ selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
638
+ resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
639
+ fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
640
+ color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
641
+ posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
642
+ negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
643
+ summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
644
+ rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
645
+ scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
646
+ autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
647
+ displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
648
+ constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
649
+ max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
650
+ min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
651
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
652
+ }, {
653
+ rendererTypeName: string;
654
+ error: unknown;
655
+ } & {
656
+ readonly RenderingComponent: import("react").FC<{
657
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
658
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
659
+ type: import("mobx-state-tree").ISimpleType<string>;
660
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
661
+ }> & {
662
+ rendererTypeName: string;
663
+ error: unknown;
664
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
665
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
666
+ type: import("mobx-state-tree").ISimpleType<string>;
667
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
668
+ }, {
669
+ rendererTypeName: string;
670
+ error: unknown;
671
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
672
+ onHorizontalScroll?: Function | undefined;
673
+ blockState?: Record<string, any> | undefined;
674
+ }>;
675
+ readonly DisplayBlurb: import("react").FC<{
676
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
677
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
678
+ type: import("mobx-state-tree").ISimpleType<string>;
679
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
680
+ }> & {
681
+ rendererTypeName: string;
682
+ error: unknown;
683
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
684
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
685
+ type: import("mobx-state-tree").ISimpleType<string>;
686
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
687
+ }, {
688
+ rendererTypeName: string;
689
+ error: unknown;
690
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
691
+ }> | null;
692
+ readonly adapterConfig: any;
693
+ readonly parentTrack: any;
694
+ renderProps(): any;
695
+ readonly rendererType: any;
696
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
697
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
698
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
699
+ regionCannotBeRendered(): undefined;
700
+ } & {
701
+ setError(error?: unknown): void;
702
+ setRpcDriverName(rpcDriverName: string): void;
703
+ reload(): void;
704
+ } & {
705
+ currBpPerPx: number;
706
+ message: string;
707
+ featureIdUnderMouse: string | undefined;
708
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
709
+ scrollTop: number;
710
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
711
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
712
+ } & {
713
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
714
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
715
+ } & {
716
+ readonly renderDelay: number;
717
+ readonly TooltipComponent: import("react").FC<any>;
718
+ readonly selectedFeatureId: string | undefined;
719
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
720
+ } & {
721
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
722
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
723
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
724
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
725
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
726
+ readonly currentBytesRequested: number;
727
+ readonly currentFeatureScreenDensity: number;
728
+ readonly maxFeatureScreenDensity: any;
729
+ readonly estimatedStatsReady: boolean;
730
+ readonly maxAllowableBytes: number;
731
+ } & {
732
+ setMessage(message: string): void;
733
+ afterAttach(): void;
734
+ estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
735
+ headers?: Record<string, string> | undefined;
736
+ signal?: AbortSignal | undefined;
737
+ filters?: string[] | undefined;
738
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
739
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
740
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
741
+ clearRegionStats(): void;
742
+ setHeight(displayHeight: number): number;
743
+ resizeHeight(distance: number): number;
744
+ setScrollTop(scrollTop: number): void;
745
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
746
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
747
+ setCurrBpPerPx(n: number): void;
748
+ deleteBlock(key: string): void;
749
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
750
+ clearFeatureSelection(): void;
751
+ setFeatureIdUnderMouse(feature: string | undefined): void;
752
+ reload(): void;
753
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
754
+ } & {
755
+ readonly regionTooLarge: boolean;
756
+ readonly regionTooLargeReason: string;
757
+ } & {
758
+ reload(): Promise<void>;
759
+ afterAttach(): void;
760
+ } & {
761
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
762
+ regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
763
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
764
+ contextMenuItems(): {
765
+ label: string;
766
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
767
+ onClick: () => void;
768
+ }[];
769
+ renderProps(): any;
770
+ } & {
771
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
772
+ overrideHeight: number;
773
+ }): Promise<JSX.Element>;
774
+ } & {
775
+ statsReady: boolean;
776
+ message: string | undefined;
777
+ stats: {
778
+ scoreMin: number;
779
+ scoreMax: number;
780
+ };
781
+ statsFetchInProgress: AbortController | undefined;
782
+ } & {
783
+ updateStats({ scoreMin, scoreMax, }: {
784
+ scoreMin: number;
785
+ scoreMax: number;
786
+ }): void;
787
+ setColor(color: string): void;
788
+ setPosColor(color: string): void;
789
+ setNegColor(color: string): void;
790
+ setLoading(aborter: AbortController): void;
791
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
792
+ setResolution(res: number): void;
793
+ setFill(fill: boolean): void;
794
+ toggleLogScale(): void;
795
+ setScaleType(scale?: string | undefined): void;
796
+ setSummaryScoreMode(val: string): void;
797
+ setAutoscale(val: string): void;
798
+ setMaxScore(val?: number | undefined): void;
799
+ setRendererType(val: string): void;
800
+ setMinScore(val?: number | undefined): void;
801
+ toggleCrossHatches(): void;
802
+ setCrossHatches(cross: boolean): void;
803
+ } & {
804
+ readonly TooltipComponent: import("react").FC<{}>;
805
+ readonly adapterTypeName: any;
806
+ readonly rendererTypeName: string;
807
+ readonly filters: undefined;
808
+ readonly scaleType: any;
809
+ readonly maxScore: any;
810
+ readonly minScore: any;
811
+ } & {
812
+ readonly rendererConfig: any;
813
+ } & {
814
+ readonly filled: any;
815
+ readonly summaryScoreModeSetting: any;
816
+ readonly domain: number[];
817
+ readonly needsScalebar: boolean;
818
+ readonly scaleOpts: {
819
+ domain: number[];
820
+ stats: {
821
+ scoreMin: number;
822
+ scoreMax: number;
823
+ };
824
+ autoscaleType: any;
825
+ scaleType: any;
826
+ inverted: any;
827
+ };
828
+ readonly canHaveFill: boolean;
829
+ readonly autoscaleType: any;
830
+ readonly displayCrossHatchesSetting: any;
831
+ } & {
832
+ readonly ticks: any;
833
+ } & {
834
+ renderProps(): any;
835
+ readonly adapterCapabilities: string[];
836
+ readonly hasResolution: boolean;
837
+ readonly hasGlobalStats: boolean;
838
+ } & {
839
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
840
+ type: string;
841
+ label: string;
842
+ checked: any;
843
+ onClick: () => void;
844
+ })[];
845
+ } & {
846
+ reload(): Promise<void>;
847
+ afterAttach(): void;
848
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
849
+ overrideHeight: number;
850
+ }): Promise<JSX.Element>;
851
+ }, import("mobx-state-tree")._NotCustomized, {
852
+ id: string;
853
+ type: string;
854
+ rpcDriverName: string | undefined;
855
+ height: number;
856
+ userBpPerPxLimit: number | undefined;
857
+ userByteSizeLimit: number | undefined;
858
+ } & import("mobx-state-tree")._NotCustomized>;
859
+ };
860
+ }
861
+ export * from './util';
862
+ export { WiggleRendering };
863
+ export { WiggleBaseRenderer };
864
+ export { LinearWiggleDisplayReactComponent, linearWiggleDisplayModelFactory };
865
+ export { Tooltip } from './LinearWiggleDisplay/components/Tooltip';
866
+ export { YSCALEBAR_LABEL_OFFSET };