@jbrowse/plugin-wiggle 1.6.8 → 1.7.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (67) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +24 -24
  2. package/dist/BigWigAdapter/BigWigAdapter.js +288 -0
  3. package/dist/BigWigAdapter/BigWigAdapter.test.js +157 -0
  4. package/dist/BigWigAdapter/configSchema.d.ts +2 -2
  5. package/dist/BigWigAdapter/configSchema.js +22 -0
  6. package/dist/BigWigAdapter/index.d.ts +1 -1
  7. package/dist/BigWigAdapter/index.js +15 -0
  8. package/dist/DensityRenderer/DensityRenderer.test.js +84 -0
  9. package/dist/DensityRenderer/index.d.ts +6 -6
  10. package/dist/DensityRenderer/index.js +137 -0
  11. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -9
  12. package/dist/LinePlotRenderer/LinePlotRenderer.js +171 -0
  13. package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
  14. package/dist/LinePlotRenderer/configSchema.js +70 -0
  15. package/dist/LinePlotRenderer/index.d.ts +3 -3
  16. package/dist/LinePlotRenderer/index.js +34 -0
  17. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +10 -10
  18. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +111 -0
  19. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -11
  20. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +112 -0
  21. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +24 -24
  22. package/dist/LinearWiggleDisplay/components/Tooltip.js +167 -0
  23. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -8
  24. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +52 -0
  25. package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -7
  26. package/dist/LinearWiggleDisplay/components/YScaleBar.js +33 -0
  27. package/dist/LinearWiggleDisplay/index.d.ts +3 -3
  28. package/dist/LinearWiggleDisplay/index.js +43 -0
  29. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +2 -2
  30. package/dist/LinearWiggleDisplay/models/configSchema.js +71 -0
  31. package/dist/LinearWiggleDisplay/models/model.d.ts +288 -288
  32. package/dist/LinearWiggleDisplay/models/model.js +706 -0
  33. package/dist/WiggleBaseRenderer.d.ts +44 -42
  34. package/dist/WiggleBaseRenderer.js +131 -0
  35. package/dist/WiggleRPC/rpcMethods.d.ts +31 -31
  36. package/dist/WiggleRPC/rpcMethods.js +295 -0
  37. package/dist/WiggleRendering.d.ts +16 -16
  38. package/dist/WiggleRendering.js +109 -0
  39. package/dist/WiggleRendering.test.js +52 -0
  40. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -4
  41. package/dist/XYPlotRenderer/XYPlotRenderer.js +199 -0
  42. package/dist/XYPlotRenderer/XYPlotRenderer.test.js +83 -0
  43. package/dist/XYPlotRenderer/index.d.ts +3 -3
  44. package/dist/XYPlotRenderer/index.js +34 -0
  45. package/dist/configSchema.d.ts +2 -2
  46. package/dist/configSchema.js +75 -0
  47. package/dist/declare.d.js +1 -0
  48. package/dist/index.d.ts +866 -866
  49. package/dist/index.js +251 -6
  50. package/dist/index.test.js +24 -0
  51. package/dist/util.d.ts +41 -41
  52. package/dist/util.js +178 -0
  53. package/dist/util.test.js +66 -0
  54. package/package.json +4 -6
  55. package/src/LinearWiggleDisplay/models/model.tsx +2 -2
  56. package/src/WiggleBaseRenderer.tsx +1 -0
  57. package/dist/DensityRenderer/DensityRenderer.test.d.ts +0 -1
  58. package/dist/WiggleRendering.test.d.ts +0 -1
  59. package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts +0 -1
  60. package/dist/index.test.d.ts +0 -1
  61. package/dist/plugin-wiggle.cjs.development.js +0 -3556
  62. package/dist/plugin-wiggle.cjs.development.js.map +0 -1
  63. package/dist/plugin-wiggle.cjs.production.min.js +0 -2
  64. package/dist/plugin-wiggle.cjs.production.min.js.map +0 -1
  65. package/dist/plugin-wiggle.esm.js +0 -3541
  66. package/dist/plugin-wiggle.esm.js.map +0 -1
  67. package/dist/util.test.d.ts +0 -1
@@ -1,288 +1,288 @@
1
- import React from 'react';
2
- import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
- import { Instance } from 'mobx-state-tree';
4
- import PluginManager from '@jbrowse/core/PluginManager';
5
- import { Feature } from '@jbrowse/core/util/simpleFeature';
6
- export declare const YSCALEBAR_LABEL_OFFSET = 5;
7
- declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
8
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
- type: import("mobx-state-tree").ISimpleType<string>;
10
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
11
- } & {
12
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
13
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
14
- key: import("mobx-state-tree").ISimpleType<string>;
15
- region: import("mobx-state-tree").IModelType<{
16
- refName: import("mobx-state-tree").ISimpleType<string>;
17
- start: import("mobx-state-tree").ISimpleType<number>;
18
- end: import("mobx-state-tree").ISimpleType<number>;
19
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
20
- } & {
21
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
22
- }, {
23
- setRefName(newRefName: string): void;
24
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
25
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
26
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
27
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
28
- }, {
29
- renderInProgress: AbortController | undefined;
30
- filled: boolean;
31
- reactElement: React.ReactElement<any, string | ((props: any) => React.ReactElement<any, any> | null) | (new (props: any) => React.Component<any, any, any>)> | undefined;
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- features: Map<string, Feature> | undefined;
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- layout: any;
34
- status: string;
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- error: unknown;
36
- message: string | undefined;
37
- maxHeightReached: boolean;
38
- ReactComponent: ({ model, }: {
39
- model: any;
40
- }) => any;
41
- renderProps: any;
42
- } & {
43
- doReload(): void;
44
- afterAttach(): void;
45
- setStatus(message: string): void;
46
- setLoading(abortController: AbortController): void;
47
- setMessage(messageText: string): void;
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- setRendered(props: {
49
- reactElement: React.ReactElement<any, string | ((props: any) => React.ReactElement<any, any> | null) | (new (props: any) => React.Component<any, any, any>)>;
50
- features: Map<string, Feature>;
51
- layout: any;
52
- maxHeightReached: boolean;
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- renderProps: any;
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- } | undefined): void;
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- setError(error: unknown): void;
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- reload(): void;
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- beforeDestroy(): void;
58
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
59
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
60
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
61
- } & {
62
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
63
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
64
- selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
65
- resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
66
- fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
67
- color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
68
- posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
- negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
70
- summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
71
- rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
72
- scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
73
- autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
74
- displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
75
- constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
76
- max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
77
- min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
78
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
79
- }, {
80
- rendererTypeName: string;
81
- error: unknown;
82
- } & {
83
- readonly RenderingComponent: React.FC<{
84
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
86
- type: import("mobx-state-tree").ISimpleType<string>;
87
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- }> & {
89
- rendererTypeName: string;
90
- error: unknown;
91
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
- type: import("mobx-state-tree").ISimpleType<string>;
94
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
- }, {
96
- rendererTypeName: string;
97
- error: unknown;
98
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
- onHorizontalScroll?: Function | undefined;
100
- blockState?: Record<string, any> | undefined;
101
- }>;
102
- readonly DisplayBlurb: React.FC<{
103
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
104
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
105
- type: import("mobx-state-tree").ISimpleType<string>;
106
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
107
- }> & {
108
- rendererTypeName: string;
109
- error: unknown;
110
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
111
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
112
- type: import("mobx-state-tree").ISimpleType<string>;
113
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
114
- }, {
115
- rendererTypeName: string;
116
- error: unknown;
117
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
118
- }> | null;
119
- readonly adapterConfig: any;
120
- readonly parentTrack: any;
121
- renderProps(): any;
122
- readonly rendererType: any;
123
- readonly DisplayMessageComponent: React.FC<any> | undefined;
124
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
125
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
126
- regionCannotBeRendered(): undefined;
127
- } & {
128
- setError(error?: unknown): void;
129
- setRpcDriverName(rpcDriverName: string): void;
130
- reload(): void;
131
- } & {
132
- currBpPerPx: number;
133
- message: string;
134
- featureIdUnderMouse: string | undefined;
135
- contextMenuFeature: Feature | undefined;
136
- scrollTop: number;
137
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
138
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
139
- } & {
140
- readonly blockType: "staticBlocks" | "dynamicBlocks";
141
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
142
- } & {
143
- readonly renderDelay: number;
144
- readonly TooltipComponent: React.FC<any>;
145
- readonly selectedFeatureId: string | undefined;
146
- readonly DisplayMessageComponent: React.FC<any> | undefined;
147
- } & {
148
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
149
- readonly featureUnderMouse: Feature | undefined;
150
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
151
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
152
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
153
- readonly currentBytesRequested: number;
154
- readonly currentFeatureScreenDensity: number;
155
- readonly maxFeatureScreenDensity: any;
156
- readonly estimatedStatsReady: boolean;
157
- readonly maxAllowableBytes: number;
158
- } & {
159
- setMessage(message: string): void;
160
- afterAttach(): void;
161
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
162
- headers?: Record<string, string> | undefined;
163
- signal?: AbortSignal | undefined;
164
- filters?: string[] | undefined;
165
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
166
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
167
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
168
- clearRegionStats(): void;
169
- setHeight(displayHeight: number): number;
170
- resizeHeight(distance: number): number;
171
- setScrollTop(scrollTop: number): void;
172
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
173
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
174
- setCurrBpPerPx(n: number): void;
175
- deleteBlock(key: string): void;
176
- selectFeature(feature: Feature): void;
177
- clearFeatureSelection(): void;
178
- setFeatureIdUnderMouse(feature: string | undefined): void;
179
- reload(): void;
180
- setContextMenuFeature(feature?: Feature | undefined): void;
181
- } & {
182
- readonly regionTooLarge: boolean;
183
- readonly regionTooLargeReason: string;
184
- } & {
185
- reload(): Promise<void>;
186
- afterAttach(): void;
187
- } & {
188
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
189
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
190
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
191
- contextMenuItems(): {
192
- label: string;
193
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
194
- onClick: () => void;
195
- }[];
196
- renderProps(): any;
197
- } & {
198
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
199
- overrideHeight: number;
200
- }): Promise<JSX.Element>;
201
- } & {
202
- statsReady: boolean;
203
- message: string | undefined;
204
- stats: {
205
- scoreMin: number;
206
- scoreMax: number;
207
- };
208
- statsFetchInProgress: AbortController | undefined;
209
- } & {
210
- updateStats({ scoreMin, scoreMax, }: {
211
- scoreMin: number;
212
- scoreMax: number;
213
- }): void;
214
- setColor(color: string): void;
215
- setPosColor(color: string): void;
216
- setNegColor(color: string): void;
217
- setLoading(aborter: AbortController): void;
218
- selectFeature(feature: Feature): void;
219
- setResolution(res: number): void;
220
- setFill(fill: boolean): void;
221
- toggleLogScale(): void;
222
- setScaleType(scale?: string | undefined): void;
223
- setSummaryScoreMode(val: string): void;
224
- setAutoscale(val: string): void;
225
- setMaxScore(val?: number | undefined): void;
226
- setRendererType(val: string): void;
227
- setMinScore(val?: number | undefined): void;
228
- toggleCrossHatches(): void;
229
- setCrossHatches(cross: boolean): void;
230
- } & {
231
- readonly TooltipComponent: React.FC<{}>;
232
- readonly adapterTypeName: any;
233
- readonly rendererTypeName: string;
234
- readonly filters: undefined;
235
- readonly scaleType: any;
236
- readonly maxScore: any;
237
- readonly minScore: any;
238
- } & {
239
- readonly rendererConfig: any;
240
- } & {
241
- readonly filled: any;
242
- readonly summaryScoreModeSetting: any;
243
- readonly domain: number[];
244
- readonly needsScalebar: boolean;
245
- readonly scaleOpts: {
246
- domain: number[];
247
- stats: {
248
- scoreMin: number;
249
- scoreMax: number;
250
- };
251
- autoscaleType: any;
252
- scaleType: any;
253
- inverted: any;
254
- };
255
- readonly canHaveFill: boolean;
256
- readonly autoscaleType: any;
257
- readonly displayCrossHatchesSetting: any;
258
- } & {
259
- readonly ticks: any;
260
- } & {
261
- renderProps(): any;
262
- readonly adapterCapabilities: string[];
263
- readonly hasResolution: boolean;
264
- readonly hasGlobalStats: boolean;
265
- } & {
266
- trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
267
- type: string;
268
- label: string;
269
- checked: any;
270
- onClick: () => void;
271
- })[];
272
- } & {
273
- reload(): Promise<void>;
274
- afterAttach(): void;
275
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
276
- overrideHeight: number;
277
- }): Promise<JSX.Element>;
278
- }, import("mobx-state-tree")._NotCustomized, {
279
- id: string;
280
- type: string;
281
- rpcDriverName: string | undefined;
282
- height: number;
283
- userBpPerPxLimit: number | undefined;
284
- userByteSizeLimit: number | undefined;
285
- } & import("mobx-state-tree")._NotCustomized>;
286
- export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
287
- export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
288
- export default stateModelFactory;
1
+ import React from 'react';
2
+ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
+ import { Instance } from 'mobx-state-tree';
4
+ import PluginManager from '@jbrowse/core/PluginManager';
5
+ import { Feature } from '@jbrowse/core/util/simpleFeature';
6
+ export declare const YSCALEBAR_LABEL_OFFSET = 5;
7
+ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
8
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
+ type: import("mobx-state-tree").ISimpleType<string>;
10
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
11
+ } & {
12
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
13
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
14
+ key: import("mobx-state-tree").ISimpleType<string>;
15
+ region: import("mobx-state-tree").IModelType<{
16
+ refName: import("mobx-state-tree").ISimpleType<string>;
17
+ start: import("mobx-state-tree").ISimpleType<number>;
18
+ end: import("mobx-state-tree").ISimpleType<number>;
19
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
20
+ } & {
21
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
22
+ }, {
23
+ setRefName(newRefName: string): void;
24
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
25
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
26
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
27
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
28
+ }, {
29
+ renderInProgress: AbortController | undefined;
30
+ filled: boolean;
31
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
32
+ features: Map<string, Feature> | undefined;
33
+ layout: any;
34
+ status: string;
35
+ error: unknown;
36
+ message: string | undefined;
37
+ maxHeightReached: boolean;
38
+ ReactComponent: ({ model, }: {
39
+ model: any;
40
+ }) => any;
41
+ renderProps: any;
42
+ } & {
43
+ doReload(): void;
44
+ afterAttach(): void;
45
+ setStatus(message: string): void;
46
+ setLoading(abortController: AbortController): void;
47
+ setMessage(messageText: string): void;
48
+ setRendered(props: {
49
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
50
+ features: Map<string, Feature>;
51
+ layout: any;
52
+ maxHeightReached: boolean;
53
+ renderProps: any;
54
+ } | undefined): void;
55
+ setError(error: unknown): void;
56
+ reload(): void;
57
+ beforeDestroy(): void;
58
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
59
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
60
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
61
+ } & {
62
+ type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
63
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
64
+ selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
65
+ resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
66
+ fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
67
+ color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
68
+ posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
+ negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
70
+ summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
71
+ rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
72
+ scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
73
+ autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
74
+ displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
75
+ constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
76
+ max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
77
+ min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
78
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
79
+ }, {
80
+ rendererTypeName: string;
81
+ error: unknown;
82
+ } & {
83
+ readonly RenderingComponent: React.FC<{
84
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
86
+ type: import("mobx-state-tree").ISimpleType<string>;
87
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
+ }> & {
89
+ rendererTypeName: string;
90
+ error: unknown;
91
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
+ type: import("mobx-state-tree").ISimpleType<string>;
94
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
+ }, {
96
+ rendererTypeName: string;
97
+ error: unknown;
98
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
+ onHorizontalScroll?: Function | undefined;
100
+ blockState?: Record<string, any> | undefined;
101
+ }>;
102
+ readonly DisplayBlurb: React.FC<{
103
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
104
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
105
+ type: import("mobx-state-tree").ISimpleType<string>;
106
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
107
+ }> & {
108
+ rendererTypeName: string;
109
+ error: unknown;
110
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
111
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
112
+ type: import("mobx-state-tree").ISimpleType<string>;
113
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
114
+ }, {
115
+ rendererTypeName: string;
116
+ error: unknown;
117
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
118
+ }> | null;
119
+ readonly adapterConfig: any;
120
+ readonly parentTrack: any;
121
+ renderProps(): any;
122
+ readonly rendererType: any;
123
+ readonly DisplayMessageComponent: React.FC<any> | undefined;
124
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
125
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
126
+ regionCannotBeRendered(): undefined;
127
+ } & {
128
+ setError(error?: unknown): void;
129
+ setRpcDriverName(rpcDriverName: string): void;
130
+ reload(): void;
131
+ } & {
132
+ currBpPerPx: number;
133
+ message: string;
134
+ featureIdUnderMouse: string | undefined;
135
+ contextMenuFeature: Feature | undefined;
136
+ scrollTop: number;
137
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
138
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
139
+ } & {
140
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
141
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
142
+ } & {
143
+ readonly renderDelay: number;
144
+ readonly TooltipComponent: React.FC<any>;
145
+ readonly selectedFeatureId: string | undefined;
146
+ readonly DisplayMessageComponent: React.FC<any> | undefined;
147
+ } & {
148
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
149
+ readonly featureUnderMouse: Feature | undefined;
150
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
151
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
152
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
153
+ readonly currentBytesRequested: number;
154
+ readonly currentFeatureScreenDensity: number;
155
+ readonly maxFeatureScreenDensity: any;
156
+ readonly estimatedStatsReady: boolean;
157
+ readonly maxAllowableBytes: number;
158
+ } & {
159
+ setMessage(message: string): void;
160
+ afterAttach(): void;
161
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
162
+ headers?: Record<string, string> | undefined;
163
+ signal?: AbortSignal | undefined;
164
+ filters?: string[] | undefined;
165
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
166
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
167
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
168
+ clearRegionStats(): void;
169
+ setHeight(displayHeight: number): number;
170
+ resizeHeight(distance: number): number;
171
+ setScrollTop(scrollTop: number): void;
172
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
173
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
174
+ setCurrBpPerPx(n: number): void;
175
+ deleteBlock(key: string): void;
176
+ selectFeature(feature: Feature): void;
177
+ clearFeatureSelection(): void;
178
+ setFeatureIdUnderMouse(feature: string | undefined): void;
179
+ reload(): void;
180
+ setContextMenuFeature(feature?: Feature | undefined): void;
181
+ } & {
182
+ readonly regionTooLarge: boolean;
183
+ readonly regionTooLargeReason: string;
184
+ } & {
185
+ reload(): Promise<void>;
186
+ afterAttach(): void;
187
+ } & {
188
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
189
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
190
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
191
+ contextMenuItems(): {
192
+ label: string;
193
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
194
+ onClick: () => void;
195
+ }[];
196
+ renderProps(): any;
197
+ } & {
198
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
199
+ overrideHeight: number;
200
+ }): Promise<JSX.Element>;
201
+ } & {
202
+ statsReady: boolean;
203
+ message: string | undefined;
204
+ stats: {
205
+ scoreMin: number;
206
+ scoreMax: number;
207
+ };
208
+ statsFetchInProgress: AbortController | undefined;
209
+ } & {
210
+ updateStats({ scoreMin, scoreMax, }: {
211
+ scoreMin: number;
212
+ scoreMax: number;
213
+ }): void;
214
+ setColor(color: string): void;
215
+ setPosColor(color: string): void;
216
+ setNegColor(color: string): void;
217
+ setLoading(aborter: AbortController): void;
218
+ selectFeature(feature: Feature): void;
219
+ setResolution(res: number): void;
220
+ setFill(fill: boolean): void;
221
+ toggleLogScale(): void;
222
+ setScaleType(scale?: string | undefined): void;
223
+ setSummaryScoreMode(val: string): void;
224
+ setAutoscale(val: string): void;
225
+ setMaxScore(val?: number | undefined): void;
226
+ setRendererType(val: string): void;
227
+ setMinScore(val?: number | undefined): void;
228
+ toggleCrossHatches(): void;
229
+ setCrossHatches(cross: boolean): void;
230
+ } & {
231
+ readonly TooltipComponent: React.FC<{}>;
232
+ readonly adapterTypeName: any;
233
+ readonly rendererTypeName: string;
234
+ readonly filters: undefined;
235
+ readonly scaleType: any;
236
+ readonly maxScore: any;
237
+ readonly minScore: any;
238
+ } & {
239
+ readonly rendererConfig: any;
240
+ } & {
241
+ readonly filled: any;
242
+ readonly summaryScoreModeSetting: any;
243
+ readonly domain: number[];
244
+ readonly needsScalebar: boolean;
245
+ readonly scaleOpts: {
246
+ domain: number[];
247
+ stats: {
248
+ scoreMin: number;
249
+ scoreMax: number;
250
+ };
251
+ autoscaleType: any;
252
+ scaleType: any;
253
+ inverted: any;
254
+ };
255
+ readonly canHaveFill: boolean;
256
+ readonly autoscaleType: any;
257
+ readonly displayCrossHatchesSetting: any;
258
+ } & {
259
+ readonly ticks: any;
260
+ } & {
261
+ renderProps(): any;
262
+ readonly adapterCapabilities: string[];
263
+ readonly hasResolution: boolean;
264
+ readonly hasGlobalStats: boolean;
265
+ } & {
266
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
267
+ type: string;
268
+ label: string;
269
+ checked: any;
270
+ onClick: () => void;
271
+ })[];
272
+ } & {
273
+ reload(): Promise<void>;
274
+ afterAttach(): void;
275
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
276
+ overrideHeight: number;
277
+ }): Promise<JSX.Element>;
278
+ }, import("mobx-state-tree")._NotCustomized, {
279
+ id: string;
280
+ type: string;
281
+ rpcDriverName: string | undefined;
282
+ height: number;
283
+ userBpPerPxLimit: number | undefined;
284
+ userByteSizeLimit: number | undefined;
285
+ } & import("mobx-state-tree")._NotCustomized>;
286
+ export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
287
+ export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
288
+ export default stateModelFactory;