@jbrowse/plugin-wiggle 1.6.8 → 1.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +24 -24
- package/dist/BigWigAdapter/BigWigAdapter.js +288 -0
- package/dist/BigWigAdapter/BigWigAdapter.test.js +157 -0
- package/dist/BigWigAdapter/configSchema.d.ts +2 -2
- package/dist/BigWigAdapter/configSchema.js +22 -0
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +15 -0
- package/dist/DensityRenderer/DensityRenderer.test.js +84 -0
- package/dist/DensityRenderer/index.d.ts +6 -6
- package/dist/DensityRenderer/index.js +137 -0
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -9
- package/dist/LinePlotRenderer/LinePlotRenderer.js +171 -0
- package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
- package/dist/LinePlotRenderer/configSchema.js +70 -0
- package/dist/LinePlotRenderer/index.d.ts +3 -3
- package/dist/LinePlotRenderer/index.js +34 -0
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +10 -10
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +111 -0
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -11
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +112 -0
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +24 -24
- package/dist/LinearWiggleDisplay/components/Tooltip.js +167 -0
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -8
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +52 -0
- package/dist/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -7
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +33 -0
- package/dist/LinearWiggleDisplay/index.d.ts +3 -3
- package/dist/LinearWiggleDisplay/index.js +43 -0
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +2 -2
- package/dist/LinearWiggleDisplay/models/configSchema.js +71 -0
- package/dist/LinearWiggleDisplay/models/model.d.ts +288 -288
- package/dist/LinearWiggleDisplay/models/model.js +706 -0
- package/dist/WiggleBaseRenderer.d.ts +44 -42
- package/dist/WiggleBaseRenderer.js +131 -0
- package/dist/WiggleRPC/rpcMethods.d.ts +31 -31
- package/dist/WiggleRPC/rpcMethods.js +295 -0
- package/dist/WiggleRendering.d.ts +16 -16
- package/dist/WiggleRendering.js +109 -0
- package/dist/WiggleRendering.test.js +52 -0
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -4
- package/dist/XYPlotRenderer/XYPlotRenderer.js +199 -0
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +83 -0
- package/dist/XYPlotRenderer/index.d.ts +3 -3
- package/dist/XYPlotRenderer/index.js +34 -0
- package/dist/configSchema.d.ts +2 -2
- package/dist/configSchema.js +75 -0
- package/dist/declare.d.js +1 -0
- package/dist/index.d.ts +866 -866
- package/dist/index.js +251 -6
- package/dist/index.test.js +24 -0
- package/dist/util.d.ts +41 -41
- package/dist/util.js +178 -0
- package/dist/util.test.js +66 -0
- package/package.json +4 -6
- package/src/LinearWiggleDisplay/models/model.tsx +2 -2
- package/src/WiggleBaseRenderer.tsx +1 -0
- package/dist/DensityRenderer/DensityRenderer.test.d.ts +0 -1
- package/dist/WiggleRendering.test.d.ts +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.test.d.ts +0 -1
- package/dist/index.test.d.ts +0 -1
- package/dist/plugin-wiggle.cjs.development.js +0 -3556
- package/dist/plugin-wiggle.cjs.development.js.map +0 -1
- package/dist/plugin-wiggle.cjs.production.min.js +0 -2
- package/dist/plugin-wiggle.cjs.production.min.js.map +0 -1
- package/dist/plugin-wiggle.esm.js +0 -3541
- package/dist/plugin-wiggle.esm.js.map +0 -1
- package/dist/util.test.d.ts +0 -1
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import React from 'react';
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import { Instance } from 'mobx-state-tree';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { Feature } from '@jbrowse/core/util/simpleFeature';
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export declare const YSCALEBAR_LABEL_OFFSET = 5;
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declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: React.ReactElement<any, string |
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features: Map<string, Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: React.ReactElement<any, string |
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features: Map<string, Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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} | undefined): void;
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setError(error: unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
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configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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}, {
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rendererTypeName: string;
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error: unknown;
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} & {
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readonly RenderingComponent: React.FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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}>;
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readonly DisplayBlurb: React.FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack: any;
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renderProps(): any;
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readonly rendererType: any;
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readonly DisplayMessageComponent: React.FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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} & {
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readonly blockType: "staticBlocks" | "dynamicBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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readonly renderDelay: number;
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readonly TooltipComponent: React.FC<any>;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: React.FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly estimatedStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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setMessage(message: string): void;
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afterAttach(): void;
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estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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headers?: Record<string, string> | undefined;
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signal?: AbortSignal | undefined;
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filters?: string[] | undefined;
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}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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clearRegionStats(): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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setScrollTop(scrollTop: number): void;
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updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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reload(): Promise<void>;
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afterAttach(): void;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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contextMenuItems(): {
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label: string;
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icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
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onClick: () => void;
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}[];
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renderProps(): any;
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} & {
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renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
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overrideHeight: number;
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}): Promise<JSX.Element>;
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} & {
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statsReady: boolean;
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message: string | undefined;
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stats: {
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scoreMin: number;
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scoreMax: number;
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};
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statsFetchInProgress: AbortController | undefined;
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} & {
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updateStats({ scoreMin, scoreMax, }: {
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scoreMin: number;
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scoreMax: number;
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}): void;
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setColor(color: string): void;
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215
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setPosColor(color: string): void;
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216
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setNegColor(color: string): void;
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217
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setLoading(aborter: AbortController): void;
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218
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selectFeature(feature: Feature): void;
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setResolution(res: number): void;
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setFill(fill: boolean): void;
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toggleLogScale(): void;
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setScaleType(scale?: string | undefined): void;
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setSummaryScoreMode(val: string): void;
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224
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setAutoscale(val: string): void;
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setMaxScore(val?: number | undefined): void;
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setRendererType(val: string): void;
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setMinScore(val?: number | undefined): void;
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toggleCrossHatches(): void;
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setCrossHatches(cross: boolean): void;
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} & {
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readonly TooltipComponent: React.FC<{}>;
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readonly adapterTypeName: any;
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readonly rendererTypeName: string;
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-
readonly filters: undefined;
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|
-
readonly scaleType: any;
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|
-
readonly maxScore: any;
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readonly minScore: any;
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238
|
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} & {
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|
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readonly rendererConfig: any;
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240
|
-
} & {
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|
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readonly filled: any;
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|
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readonly summaryScoreModeSetting: any;
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243
|
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readonly domain: number[];
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244
|
-
readonly needsScalebar: boolean;
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245
|
-
readonly scaleOpts: {
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246
|
-
domain: number[];
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|
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stats: {
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scoreMin: number;
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|
-
scoreMax: number;
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|
-
};
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|
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autoscaleType: any;
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|
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scaleType: any;
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|
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inverted: any;
|
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|
-
};
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|
-
readonly canHaveFill: boolean;
|
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256
|
-
readonly autoscaleType: any;
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257
|
-
readonly displayCrossHatchesSetting: any;
|
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258
|
-
} & {
|
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259
|
-
readonly ticks: any;
|
|
260
|
-
} & {
|
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261
|
-
renderProps(): any;
|
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262
|
-
readonly adapterCapabilities: string[];
|
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263
|
-
readonly hasResolution: boolean;
|
|
264
|
-
readonly hasGlobalStats: boolean;
|
|
265
|
-
} & {
|
|
266
|
-
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
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267
|
-
type: string;
|
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268
|
-
label: string;
|
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269
|
-
checked: any;
|
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270
|
-
onClick: () => void;
|
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271
|
-
})[];
|
|
272
|
-
} & {
|
|
273
|
-
reload(): Promise<void>;
|
|
274
|
-
afterAttach(): void;
|
|
275
|
-
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
|
|
276
|
-
overrideHeight: number;
|
|
277
|
-
}): Promise<JSX.Element>;
|
|
278
|
-
}, import("mobx-state-tree")._NotCustomized, {
|
|
279
|
-
id: string;
|
|
280
|
-
type: string;
|
|
281
|
-
rpcDriverName: string | undefined;
|
|
282
|
-
height: number;
|
|
283
|
-
userBpPerPxLimit: number | undefined;
|
|
284
|
-
userByteSizeLimit: number | undefined;
|
|
285
|
-
} & import("mobx-state-tree")._NotCustomized>;
|
|
286
|
-
export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
287
|
-
export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
|
|
288
|
-
export default stateModelFactory;
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
3
|
+
import { Instance } from 'mobx-state-tree';
|
|
4
|
+
import PluginManager from '@jbrowse/core/PluginManager';
|
|
5
|
+
import { Feature } from '@jbrowse/core/util/simpleFeature';
|
|
6
|
+
export declare const YSCALEBAR_LABEL_OFFSET = 5;
|
|
7
|
+
declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
|
|
8
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
10
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
11
|
+
} & {
|
|
12
|
+
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
13
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
14
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
|
15
|
+
region: import("mobx-state-tree").IModelType<{
|
|
16
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
17
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
18
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
19
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
20
|
+
} & {
|
|
21
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
22
|
+
}, {
|
|
23
|
+
setRefName(newRefName: string): void;
|
|
24
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
25
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
26
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
27
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
28
|
+
}, {
|
|
29
|
+
renderInProgress: AbortController | undefined;
|
|
30
|
+
filled: boolean;
|
|
31
|
+
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
|
|
32
|
+
features: Map<string, Feature> | undefined;
|
|
33
|
+
layout: any;
|
|
34
|
+
status: string;
|
|
35
|
+
error: unknown;
|
|
36
|
+
message: string | undefined;
|
|
37
|
+
maxHeightReached: boolean;
|
|
38
|
+
ReactComponent: ({ model, }: {
|
|
39
|
+
model: any;
|
|
40
|
+
}) => any;
|
|
41
|
+
renderProps: any;
|
|
42
|
+
} & {
|
|
43
|
+
doReload(): void;
|
|
44
|
+
afterAttach(): void;
|
|
45
|
+
setStatus(message: string): void;
|
|
46
|
+
setLoading(abortController: AbortController): void;
|
|
47
|
+
setMessage(messageText: string): void;
|
|
48
|
+
setRendered(props: {
|
|
49
|
+
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
|
|
50
|
+
features: Map<string, Feature>;
|
|
51
|
+
layout: any;
|
|
52
|
+
maxHeightReached: boolean;
|
|
53
|
+
renderProps: any;
|
|
54
|
+
} | undefined): void;
|
|
55
|
+
setError(error: unknown): void;
|
|
56
|
+
reload(): void;
|
|
57
|
+
beforeDestroy(): void;
|
|
58
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
59
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
60
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
61
|
+
} & {
|
|
62
|
+
type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
|
|
63
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
64
|
+
selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
65
|
+
resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
66
|
+
fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
67
|
+
color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
68
|
+
posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
69
|
+
negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
70
|
+
summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
71
|
+
rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
72
|
+
scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
73
|
+
autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
74
|
+
displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
75
|
+
constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
76
|
+
max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
77
|
+
min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
78
|
+
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
79
|
+
}, {
|
|
80
|
+
rendererTypeName: string;
|
|
81
|
+
error: unknown;
|
|
82
|
+
} & {
|
|
83
|
+
readonly RenderingComponent: React.FC<{
|
|
84
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
85
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
86
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
87
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
88
|
+
}> & {
|
|
89
|
+
rendererTypeName: string;
|
|
90
|
+
error: unknown;
|
|
91
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
92
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
93
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
94
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
95
|
+
}, {
|
|
96
|
+
rendererTypeName: string;
|
|
97
|
+
error: unknown;
|
|
98
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
99
|
+
onHorizontalScroll?: Function | undefined;
|
|
100
|
+
blockState?: Record<string, any> | undefined;
|
|
101
|
+
}>;
|
|
102
|
+
readonly DisplayBlurb: React.FC<{
|
|
103
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
104
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
105
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
106
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
107
|
+
}> & {
|
|
108
|
+
rendererTypeName: string;
|
|
109
|
+
error: unknown;
|
|
110
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
111
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
112
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
113
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
114
|
+
}, {
|
|
115
|
+
rendererTypeName: string;
|
|
116
|
+
error: unknown;
|
|
117
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
118
|
+
}> | null;
|
|
119
|
+
readonly adapterConfig: any;
|
|
120
|
+
readonly parentTrack: any;
|
|
121
|
+
renderProps(): any;
|
|
122
|
+
readonly rendererType: any;
|
|
123
|
+
readonly DisplayMessageComponent: React.FC<any> | undefined;
|
|
124
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
125
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
126
|
+
regionCannotBeRendered(): undefined;
|
|
127
|
+
} & {
|
|
128
|
+
setError(error?: unknown): void;
|
|
129
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
130
|
+
reload(): void;
|
|
131
|
+
} & {
|
|
132
|
+
currBpPerPx: number;
|
|
133
|
+
message: string;
|
|
134
|
+
featureIdUnderMouse: string | undefined;
|
|
135
|
+
contextMenuFeature: Feature | undefined;
|
|
136
|
+
scrollTop: number;
|
|
137
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
138
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
139
|
+
} & {
|
|
140
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
141
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
142
|
+
} & {
|
|
143
|
+
readonly renderDelay: number;
|
|
144
|
+
readonly TooltipComponent: React.FC<any>;
|
|
145
|
+
readonly selectedFeatureId: string | undefined;
|
|
146
|
+
readonly DisplayMessageComponent: React.FC<any> | undefined;
|
|
147
|
+
} & {
|
|
148
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
|
|
149
|
+
readonly featureUnderMouse: Feature | undefined;
|
|
150
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
151
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
152
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
153
|
+
readonly currentBytesRequested: number;
|
|
154
|
+
readonly currentFeatureScreenDensity: number;
|
|
155
|
+
readonly maxFeatureScreenDensity: any;
|
|
156
|
+
readonly estimatedStatsReady: boolean;
|
|
157
|
+
readonly maxAllowableBytes: number;
|
|
158
|
+
} & {
|
|
159
|
+
setMessage(message: string): void;
|
|
160
|
+
afterAttach(): void;
|
|
161
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
162
|
+
headers?: Record<string, string> | undefined;
|
|
163
|
+
signal?: AbortSignal | undefined;
|
|
164
|
+
filters?: string[] | undefined;
|
|
165
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
166
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
167
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
168
|
+
clearRegionStats(): void;
|
|
169
|
+
setHeight(displayHeight: number): number;
|
|
170
|
+
resizeHeight(distance: number): number;
|
|
171
|
+
setScrollTop(scrollTop: number): void;
|
|
172
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
173
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
174
|
+
setCurrBpPerPx(n: number): void;
|
|
175
|
+
deleteBlock(key: string): void;
|
|
176
|
+
selectFeature(feature: Feature): void;
|
|
177
|
+
clearFeatureSelection(): void;
|
|
178
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
179
|
+
reload(): void;
|
|
180
|
+
setContextMenuFeature(feature?: Feature | undefined): void;
|
|
181
|
+
} & {
|
|
182
|
+
readonly regionTooLarge: boolean;
|
|
183
|
+
readonly regionTooLargeReason: string;
|
|
184
|
+
} & {
|
|
185
|
+
reload(): Promise<void>;
|
|
186
|
+
afterAttach(): void;
|
|
187
|
+
} & {
|
|
188
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
189
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
190
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
191
|
+
contextMenuItems(): {
|
|
192
|
+
label: string;
|
|
193
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
194
|
+
onClick: () => void;
|
|
195
|
+
}[];
|
|
196
|
+
renderProps(): any;
|
|
197
|
+
} & {
|
|
198
|
+
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
|
|
199
|
+
overrideHeight: number;
|
|
200
|
+
}): Promise<JSX.Element>;
|
|
201
|
+
} & {
|
|
202
|
+
statsReady: boolean;
|
|
203
|
+
message: string | undefined;
|
|
204
|
+
stats: {
|
|
205
|
+
scoreMin: number;
|
|
206
|
+
scoreMax: number;
|
|
207
|
+
};
|
|
208
|
+
statsFetchInProgress: AbortController | undefined;
|
|
209
|
+
} & {
|
|
210
|
+
updateStats({ scoreMin, scoreMax, }: {
|
|
211
|
+
scoreMin: number;
|
|
212
|
+
scoreMax: number;
|
|
213
|
+
}): void;
|
|
214
|
+
setColor(color: string): void;
|
|
215
|
+
setPosColor(color: string): void;
|
|
216
|
+
setNegColor(color: string): void;
|
|
217
|
+
setLoading(aborter: AbortController): void;
|
|
218
|
+
selectFeature(feature: Feature): void;
|
|
219
|
+
setResolution(res: number): void;
|
|
220
|
+
setFill(fill: boolean): void;
|
|
221
|
+
toggleLogScale(): void;
|
|
222
|
+
setScaleType(scale?: string | undefined): void;
|
|
223
|
+
setSummaryScoreMode(val: string): void;
|
|
224
|
+
setAutoscale(val: string): void;
|
|
225
|
+
setMaxScore(val?: number | undefined): void;
|
|
226
|
+
setRendererType(val: string): void;
|
|
227
|
+
setMinScore(val?: number | undefined): void;
|
|
228
|
+
toggleCrossHatches(): void;
|
|
229
|
+
setCrossHatches(cross: boolean): void;
|
|
230
|
+
} & {
|
|
231
|
+
readonly TooltipComponent: React.FC<{}>;
|
|
232
|
+
readonly adapterTypeName: any;
|
|
233
|
+
readonly rendererTypeName: string;
|
|
234
|
+
readonly filters: undefined;
|
|
235
|
+
readonly scaleType: any;
|
|
236
|
+
readonly maxScore: any;
|
|
237
|
+
readonly minScore: any;
|
|
238
|
+
} & {
|
|
239
|
+
readonly rendererConfig: any;
|
|
240
|
+
} & {
|
|
241
|
+
readonly filled: any;
|
|
242
|
+
readonly summaryScoreModeSetting: any;
|
|
243
|
+
readonly domain: number[];
|
|
244
|
+
readonly needsScalebar: boolean;
|
|
245
|
+
readonly scaleOpts: {
|
|
246
|
+
domain: number[];
|
|
247
|
+
stats: {
|
|
248
|
+
scoreMin: number;
|
|
249
|
+
scoreMax: number;
|
|
250
|
+
};
|
|
251
|
+
autoscaleType: any;
|
|
252
|
+
scaleType: any;
|
|
253
|
+
inverted: any;
|
|
254
|
+
};
|
|
255
|
+
readonly canHaveFill: boolean;
|
|
256
|
+
readonly autoscaleType: any;
|
|
257
|
+
readonly displayCrossHatchesSetting: any;
|
|
258
|
+
} & {
|
|
259
|
+
readonly ticks: any;
|
|
260
|
+
} & {
|
|
261
|
+
renderProps(): any;
|
|
262
|
+
readonly adapterCapabilities: string[];
|
|
263
|
+
readonly hasResolution: boolean;
|
|
264
|
+
readonly hasGlobalStats: boolean;
|
|
265
|
+
} & {
|
|
266
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
267
|
+
type: string;
|
|
268
|
+
label: string;
|
|
269
|
+
checked: any;
|
|
270
|
+
onClick: () => void;
|
|
271
|
+
})[];
|
|
272
|
+
} & {
|
|
273
|
+
reload(): Promise<void>;
|
|
274
|
+
afterAttach(): void;
|
|
275
|
+
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
|
|
276
|
+
overrideHeight: number;
|
|
277
|
+
}): Promise<JSX.Element>;
|
|
278
|
+
}, import("mobx-state-tree")._NotCustomized, {
|
|
279
|
+
id: string;
|
|
280
|
+
type: string;
|
|
281
|
+
rpcDriverName: string | undefined;
|
|
282
|
+
height: number;
|
|
283
|
+
userBpPerPxLimit: number | undefined;
|
|
284
|
+
userByteSizeLimit: number | undefined;
|
|
285
|
+
} & import("mobx-state-tree")._NotCustomized>;
|
|
286
|
+
export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
287
|
+
export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
|
|
288
|
+
export default stateModelFactory;
|