npm - @jbrowse/plugin-variants - Versions diffs - 4.1.3 → 4.1.5 - Mend

@jbrowse/plugin-variants 4.1.3 → 4.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (41) hide show

package/esm/MultiLinearVariantMatrixDisplay/model.d.ts CHANGED Viewed

@@ -35,6 +35,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 statusMessage?: string;
                 reactElement?: React.ReactElement;
                 isRenderingPending?: boolean;
+                displayHeight?: number;
             };
         }) => import("react/jsx-runtime").JSX.Element;
         renderProps: any;
@@ -53,10 +54,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         beforeDestroy(): void;
     } & {
         readonly statusMessage: any;
+        readonly displayHeight: number | undefined;
     } & {
         afterAttach(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxFeatureScreenDensity: {
             type: string;
             description: string;
@@ -83,7 +85,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             description: string;
             defaultValue: never[];
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
 } & {
@@ -104,6 +106,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    subtreeFilter: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
 } & {
     type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
     lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -395,6 +398,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -413,6 +417,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -439,6 +444,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -457,6 +463,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -470,7 +477,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         [x: string]: any;
                     } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
                 } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -497,7 +504,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
             showLegend: boolean | undefined;
             showTooltips: boolean | undefined;
         } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -787,6 +794,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -805,10 +813,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-            configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -835,7 +844,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
             showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
         }, {
@@ -1145,6 +1154,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     setMafFilter(arg: number): void;
     setShowSidebarLabels(arg: boolean): void;
     setShowTree(arg: boolean): void;
+    setSubtreeFilter(names?: string[]): void;
     setPhasedMode(arg: string): void;
     setAutoHeight(auto: boolean): void;
     setHasPhased(arg: boolean): void;
@@ -1190,6 +1200,13 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             disabled: boolean;
             onClick: () => void;
             helpText?: undefined;
+        } | {
+            label: string;
+            onClick: () => void;
+            type?: undefined;
+            checked?: undefined;
+            disabled?: undefined;
+            helpText?: undefined;
         } | {
             label: string;
             helpText: string;
@@ -1309,6 +1326,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -1327,6 +1345,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -1353,6 +1372,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -1371,6 +1391,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -1384,7 +1405,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         [x: string]: any;
                     } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
                 } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -1411,7 +1432,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
                 setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
                     [x: string]: any;
                 } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
@@ -1430,6 +1451,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             clusterTree: string | undefined;
             treeAreaWidth: number;
             lineZoneHeight: number;
+            subtreeFilter: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
         } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
@@ -1718,6 +1740,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -1736,6 +1759,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -1762,6 +1786,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -1780,6 +1805,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -1793,7 +1819,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 [x: string]: any;
                             } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
                         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-                    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+                    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         maxFeatureScreenDensity: {
                             type: string;
                             description: string;
@@ -1820,7 +1846,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                             description: string;
                             defaultValue: never[];
                         };
-                    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
                     showLegend: boolean | undefined;
                     showTooltips: boolean | undefined;
                 } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -2110,6 +2136,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -2128,10 +2155,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-                    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+                    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         maxFeatureScreenDensity: {
                             type: string;
                             description: string;
@@ -2158,7 +2186,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                             description: string;
                             defaultValue: never[];
                         };
-                    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
                     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
                     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
                 }, {
@@ -2468,6 +2496,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             setMafFilter(arg: number): void;
             setShowSidebarLabels(arg: boolean): void;
             setShowTree(arg: boolean): void;
+            setSubtreeFilter(names?: string[]): void;
             setPhasedMode(arg: string): void;
             setAutoHeight(auto: boolean): void;
             setHasPhased(arg: boolean): void;
@@ -2513,6 +2542,13 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     disabled: boolean;
                     onClick: () => void;
                     helpText?: undefined;
+                } | {
+                    label: string;
+                    onClick: () => void;
+                    type?: undefined;
+                    checked?: undefined;
+                    disabled?: undefined;
+                    helpText?: undefined;
                 } | {
                     label: string;
                     helpText: string;
@@ -2632,6 +2668,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -2650,10 +2687,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-            configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -2680,7 +2718,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
             showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
         } & {
@@ -2701,6 +2739,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
             treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
             lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+            subtreeFilter: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
         }, {
             rendererTypeName: string;
             error: unknown;
@@ -2989,6 +3028,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -3007,6 +3047,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -3033,6 +3074,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -3051,6 +3093,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -3064,7 +3107,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 [x: string]: any;
                             } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
                         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-                    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+                    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         maxFeatureScreenDensity: {
                             type: string;
                             description: string;
@@ -3091,7 +3134,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                             description: string;
                             defaultValue: never[];
                         };
-                    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
                     showLegend: boolean | undefined;
                     showTooltips: boolean | undefined;
                 } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -3381,6 +3424,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                                 statusMessage?: string;
                                 reactElement?: React.ReactElement;
                                 isRenderingPending?: boolean;
+                                displayHeight?: number;
                             };
                         }) => import("react/jsx-runtime").JSX.Element;
                         renderProps: any;
@@ -3399,10 +3443,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         beforeDestroy(): void;
                     } & {
                         readonly statusMessage: any;
+                        readonly displayHeight: number | undefined;
                     } & {
                         afterAttach(): void;
                     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-                    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+                    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         maxFeatureScreenDensity: {
                             type: string;
                             description: string;
@@ -3429,7 +3474,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                             description: string;
                             defaultValue: never[];
                         };
-                    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
                     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
                     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
                 }, {
@@ -3739,6 +3784,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             setMafFilter(arg: number): void;
             setShowSidebarLabels(arg: boolean): void;
             setShowTree(arg: boolean): void;
+            setSubtreeFilter(names?: string[]): void;
             setPhasedMode(arg: string): void;
             setAutoHeight(auto: boolean): void;
             setHasPhased(arg: boolean): void;
@@ -3784,6 +3830,13 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     disabled: boolean;
                     onClick: () => void;
                     helpText?: undefined;
+                } | {
+                    label: string;
+                    onClick: () => void;
+                    type?: undefined;
+                    checked?: undefined;
+                    disabled?: undefined;
+                    helpText?: undefined;
                 } | {
                     label: string;
                     helpText: string;
@@ -3922,6 +3975,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 statusMessage?: string;
                 reactElement?: React.ReactElement;
                 isRenderingPending?: boolean;
+                displayHeight?: number;
             };
         }) => import("react/jsx-runtime").JSX.Element;
         renderProps: any;
@@ -3940,10 +3994,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         beforeDestroy(): void;
     } & {
         readonly statusMessage: any;
+        readonly displayHeight: number | undefined;
     } & {
         afterAttach(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxFeatureScreenDensity: {
             type: string;
             description: string;
@@ -3970,7 +4025,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             description: string;
             defaultValue: never[];
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
 } & {
@@ -3991,6 +4046,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    subtreeFilter: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
 } & {
     type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
     lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;

package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-declare const LinearVariantMatrixRenderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+declare const LinearVariantMatrixRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default LinearVariantMatrixRenderer;

package/esm/MultiLinearVariantRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default configSchema;

package/esm/PlinkLDAdapter/configSchema.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-declare const PlinkLDAdapter: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const PlinkLDAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     ldLocation: {
         type: string;
         defaultValue: {
@@ -6,5 +6,5 @@ declare const PlinkLDAdapter: import("node_modules/@jbrowse/core/src/configurati
             locationType: string;
         };
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default PlinkLDAdapter;

package/esm/PlinkLDAdapter/configSchemaTabix.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-declare const PlinkLDTabixAdapter: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const PlinkLDTabixAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     ldLocation: {
         type: string;
         defaultValue: {
@@ -6,7 +6,7 @@ declare const PlinkLDTabixAdapter: import("node_modules/@jbrowse/core/src/config
             locationType: string;
         };
     };
-    index: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         indexType: {
             model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             type: string;
@@ -19,6 +19,6 @@ declare const PlinkLDTabixAdapter: import("node_modules/@jbrowse/core/src/config
                 locationType: string;
             };
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default PlinkLDTabixAdapter;

package/esm/SplitVcfTabixAdapter/configSchema.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-declare const SplitVcfTabixAdapter: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const SplitVcfTabixAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     vcfGzLocationMap: {
         type: string;
         defaultValue: {};
@@ -19,5 +19,5 @@ declare const SplitVcfTabixAdapter: import("node_modules/@jbrowse/core/src/confi
             locationType: string;
         };
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default SplitVcfTabixAdapter;

package/esm/StructuralVariantChordRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     strokeColor: {
         type: string;
         description: string;
@@ -17,5 +17,5 @@ declare const configSchema: import("node_modules/@jbrowse/core/src/configuration
         defaultValue: string;
         contextVariable: string[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default configSchema;

package/esm/VariantFeatureWidget/configSchema.d.ts CHANGED Viewed

	@@ -1 +1 @@
1	- export declare const configSchema: import("~~node_modules/@~~jbrowse/core/~~src/~~configuration/configurationSchema").ConfigurationSchemaType<{}, import("~~node_modules/@~~jbrowse/core/~~src/~~configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
1	+ export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/esm/VariantFeatureWidget/stateModelFactory.d.ts CHANGED Viewed

@@ -33,7 +33,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         readonly hasExon: boolean | undefined;
         readonly hasExonOrCDS: boolean | undefined;
     } & {
-        afterAttach(): void;
+        afterCreate(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
     descriptions: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown> | undefined, Record<string, unknown> | undefined, Record<string, unknown> | undefined>;
 } & {
@@ -84,7 +84,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         readonly hasExon: boolean | undefined;
         readonly hasExonOrCDS: boolean | undefined;
     } & {
-        afterAttach(): void;
+        afterCreate(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
     descriptions: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown> | undefined, Record<string, unknown> | undefined, Record<string, unknown> | undefined>;
 }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, {

package/esm/VariantTrack/configSchema.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-export default function VariantTrackF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+export default function VariantTrackF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
         description: string;
         type: string;
@@ -31,7 +31,7 @@ export default function VariantTrackF(pluginManager: PluginManager): import("nod
         defaultValue: string;
     };
     adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
-    textSearching: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         indexingAttributes: {
             type: string;
             description: string;
@@ -43,9 +43,9 @@ export default function VariantTrackF(pluginManager: PluginManager): import("nod
             defaultValue: string[];
         };
         textSearchAdapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     displays: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
-    formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         feature: {
             type: string;
             description: string;
@@ -68,8 +68,8 @@ export default function VariantTrackF(pluginManager: PluginManager): import("nod
             defaultValue: number;
             description: string;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         config: {
             type: string;
             description: string;
@@ -80,5 +80,5 @@ export default function VariantTrackF(pluginManager: PluginManager): import("nod
             type: string;
             defaultValue: boolean;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;