@jbrowse/plugin-variants 4.1.3 → 4.1.5

package/esm/ChordVariantDisplay/models/configSchema.d.ts

@@ -1,5 +1,5 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     onChordClick: {
         type: string;
         description: string;
@@ -7,5 +7,5 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
         contextVariable: string[];
     };
     renderer: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IAnyModelType, [undefined]>;
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 export default configSchemaF;

package/esm/LDDisplay/SharedLDConfigSchema.d.ts

@@ -1,4 +1,4 @@
-export default function sharedLDConfigFactory(): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+export default function sharedLDConfigFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     minorAlleleFrequencyFilter: {
         type: string;
         defaultValue: number;
@@ -72,7 +72,7 @@ export default function sharedLDConfigFactory(): import("node_modules/@jbrowse/c
         type: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
         description: string;
@@ -99,4 +99,4 @@ export default function sharedLDConfigFactory(): import("node_modules/@jbrowse/c
         description: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/esm/LDDisplay/components/LDDisplayComponent.js

@@ -6,7 +6,9 @@ import Flatbush from '@jbrowse/core/util/flatbush';
 import { observer } from 'mobx-react';
 import BaseDisplayComponent from "./BaseDisplayComponent.js";
 import LDColorLegend from "./LDColorLegend.js";
-import LinesConnectingMatrixToGenomicPosition, { VariantLabels, Wrapper, } from "./LinesConnectingMatrixToGenomicPosition.js";
+import LinesConnectingMatrixToGenomicPosition from "./LinesConnectingMatrixToGenomicPosition.js";
+import VariantLabels from "./VariantLabels.js";
+import Wrapper from "./Wrapper.js";
 import RecombinationTrack from "../../shared/components/RecombinationTrack.js";
 import RecombinationYScaleBar from "../../shared/components/RecombinationYScaleBar.js";
 const SQRT2 = Math.sqrt(2);

package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts

@@ -1,13 +1,4 @@
 import type { SharedLDModel } from '../shared.ts';
-export declare const Wrapper: ({ children, model, exportSVG, yOffset, }: {
-    model: SharedLDModel;
-    children: React.ReactNode;
-    exportSVG?: boolean;
-    yOffset?: number;
-}) => import("react/jsx-runtime").JSX.Element;
-export declare const VariantLabels: ({ model, }: {
-    model: SharedLDModel;
-}) => import("react/jsx-runtime").JSX.Element | null;
 declare const LinesConnectingMatrixToGenomicPosition: ({ model, exportSVG, yOffset, }: {
     model: SharedLDModel;
     exportSVG?: boolean;

package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.js

@@ -1,4 +1,4 @@
-import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 import { forwardRef, isValidElement, useState } from 'react';
 import { ResizeHandle, SanitizedHTML } from '@jbrowse/core/ui';
 import BaseTooltip from '@jbrowse/core/ui/BaseTooltip';
@@ -6,6 +6,8 @@ import { getContainingView, getSession, getStrokeProps, } from '@jbrowse/core/ut
 import { makeStyles } from '@jbrowse/core/util/tss-react';
 import { alpha, useTheme } from '@mui/material';
 import { observer } from 'mobx-react';
+import VariantLabels from "./VariantLabels.js";
+import Wrapper from "./Wrapper.js";
 const useStyles = makeStyles()(theme => ({
     resizeHandle: {
         height: 5,
@@ -16,18 +18,6 @@ const useStyles = makeStyles()(theme => ({
         },
     },
 }));
-export const Wrapper = observer(function Wrapper({ children, model, exportSVG, yOffset = 0, }) {
-    const { height } = model;
-    const { width, offsetPx } = getContainingView(model);
-    const left = Math.max(0, -offsetPx);
-    return exportSVG ? (_jsx("g", { transform: `translate(${left} ${yOffset})`, children: children })) : (_jsx("svg", { style: {
-            position: 'absolute',
-            top: 0,
-            left,
-            height,
-            width,
-        }, children: children }));
-});
 function getGenomicX(view, assembly, snp, offsetAdjustment) {
     return ((view.bpToPx({
         refName: assembly.getCanonicalRefName2(snp.refName),
@@ -40,22 +30,6 @@ const TooltipContents = forwardRef(function TooltipContents2({ message }, ref) {
 const LineTooltip = observer(function LineTooltip({ contents, }) {
     return contents ? (_jsx(BaseTooltip, { children: _jsx(TooltipContents, { message: contents }) })) : null;
 });
-export const VariantLabels = observer(function VariantLabels({ model, }) {
-    const theme = useTheme();
-    const { assemblyManager } = getSession(model);
-    const view = getContainingView(model);
-    const { snps, showLabels } = model;
-    const { offsetPx, assemblyNames } = view;
-    const assembly = assemblyManager.get(assemblyNames[0]);
-    const offsetAdj = Math.max(offsetPx, 0);
-    if (!assembly || snps.length === 0 || !showLabels) {
-        return null;
-    }
-    return (_jsx(_Fragment, { children: snps.map((snp, i) => {
-            const genomicX = getGenomicX(view, assembly, snp, offsetAdj);
-            return (_jsx("text", { x: genomicX, y: 0, transform: `rotate(-90, ${genomicX}, 0)`, fontSize: 10, textAnchor: "end", dominantBaseline: "middle", fill: theme.palette.text.primary, style: { pointerEvents: 'none' }, children: snp.id || 'NOLABEL' }, `${snp.id}-${i}`));
-        }) }));
-});
 const AllLines = observer(function AllLines({ model, setMouseOverLine, }) {
     const theme = useTheme();
     const { assemblyManager } = getSession(model);

package/esm/LDDisplay/components/VariantLabels.d.ts

@@ -0,0 +1,5 @@
+import type { SharedLDModel } from '../shared.ts';
+declare const VariantLabels: ({ model, }: {
+    model: SharedLDModel;
+}) => import("react/jsx-runtime").JSX.Element | null;
+export default VariantLabels;

package/esm/LDDisplay/components/VariantLabels.js

@@ -0,0 +1,27 @@
+import { jsx as _jsx, Fragment as _Fragment } from "react/jsx-runtime";
+import { getContainingView, getSession } from '@jbrowse/core/util';
+import { useTheme } from '@mui/material';
+import { observer } from 'mobx-react';
+function getGenomicX(view, assembly, snp, offsetAdjustment) {
+    return ((view.bpToPx({
+        refName: assembly.getCanonicalRefName2(snp.refName),
+        coord: snp.start,
+    })?.offsetPx || 0) - offsetAdjustment);
+}
+const VariantLabels = observer(function VariantLabels({ model, }) {
+    const theme = useTheme();
+    const { assemblyManager } = getSession(model);
+    const view = getContainingView(model);
+    const { snps, showLabels } = model;
+    const { offsetPx, assemblyNames } = view;
+    const assembly = assemblyManager.get(assemblyNames[0]);
+    const offsetAdj = Math.max(offsetPx, 0);
+    if (!assembly || snps.length === 0 || !showLabels) {
+        return null;
+    }
+    return (_jsx(_Fragment, { children: snps.map((snp, i) => {
+            const genomicX = getGenomicX(view, assembly, snp, offsetAdj);
+            return (_jsx("text", { x: genomicX, y: 0, transform: `rotate(-90, ${genomicX}, 0)`, fontSize: 10, textAnchor: "end", dominantBaseline: "middle", fill: theme.palette.text.primary, style: { pointerEvents: 'none' }, children: snp.id || 'NOLABEL' }, `${snp.id}-${i}`));
+        }) }));
+});
+export default VariantLabels;

package/esm/LDDisplay/components/Wrapper.d.ts

@@ -0,0 +1,8 @@
+import type { SharedLDModel } from '../shared.ts';
+declare const Wrapper: ({ children, model, exportSVG, yOffset, }: {
+    model: SharedLDModel;
+    children: React.ReactNode;
+    exportSVG?: boolean;
+    yOffset?: number;
+}) => import("react/jsx-runtime").JSX.Element;
+export default Wrapper;

package/esm/LDDisplay/components/Wrapper.js

@@ -0,0 +1,16 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import { getContainingView } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+const Wrapper = observer(function Wrapper({ children, model, exportSVG, yOffset = 0, }) {
+    const { height } = model;
+    const { width, offsetPx } = getContainingView(model);
+    const left = Math.max(0, -offsetPx);
+    return exportSVG ? (_jsx("g", { transform: `translate(${left} ${yOffset})`, children: children })) : (_jsx("svg", { style: {
+            position: 'absolute',
+            top: 0,
+            left,
+            height,
+            width,
+        }, children: children }));
+});
+export default Wrapper;

package/esm/LDDisplay/configSchema1.d.ts

@@ -1,17 +1,17 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-export default function configSchemaF(_pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
-    renderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+export default function configSchemaF(_pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    renderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxHeight: {
             type: string;
             description: string;
             defaultValue: number;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     height: {
         type: string;
         defaultValue: number;
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     minorAlleleFrequencyFilter: {
         type: string;
         defaultValue: number;
@@ -85,7 +85,7 @@ export default function configSchemaF(_pluginManager: PluginManager): import("no
         type: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
         description: string;
@@ -112,4 +112,4 @@ export default function configSchemaF(_pluginManager: PluginManager): import("no
         description: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/esm/LDDisplay/configSchema2.d.ts

@@ -1,17 +1,17 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-export default function configSchemaF(_pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
-    renderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+export default function configSchemaF(_pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    renderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxHeight: {
             type: string;
             description: string;
             defaultValue: number;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     height: {
         type: string;
         defaultValue: number;
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     minorAlleleFrequencyFilter: {
         type: string;
         defaultValue: number;
@@ -85,7 +85,7 @@ export default function configSchemaF(_pluginManager: PluginManager): import("no
         type: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
         description: string;
@@ -112,4 +112,4 @@ export default function configSchemaF(_pluginManager: PluginManager): import("no
         description: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/esm/LDDisplay/renderSvg.js

@@ -2,7 +2,9 @@ import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-run
 import { getContainingView, getRpcSessionId, getSession, } from '@jbrowse/core/util';
 import { ReactRendering, renderingToSvg, } from '@jbrowse/core/util/offscreenCanvasUtils';
 import { LDSVGColorLegend } from "./components/LDColorLegend.js";
-import LinesConnectingMatrixToGenomicPosition, { VariantLabels, Wrapper, } from "./components/LinesConnectingMatrixToGenomicPosition.js";
+import LinesConnectingMatrixToGenomicPosition from "./components/LinesConnectingMatrixToGenomicPosition.js";
+import VariantLabels from "./components/VariantLabels.js";
+import Wrapper from "./components/Wrapper.js";
 import RecombinationTrack from "../shared/components/RecombinationTrack.js";
 import RecombinationYScaleBar from "../shared/components/RecombinationYScaleBar.js";
 export async function renderSvg(self, opts) {

package/esm/LDRenderer/configSchema.d.ts

@@ -1,8 +1,8 @@
-declare const LDRenderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const LDRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxHeight: {
         type: string;
         description: string;
         defaultValue: number;
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default LDRenderer;

package/esm/LDTrack/configSchema.d.ts

@@ -1,5 +1,5 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-declare const configSchema: (pluginManager: PluginManager) => import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
         description: string;
         type: string;
@@ -31,7 +31,7 @@ declare const configSchema: (pluginManager: PluginManager) => import("node_modul
         defaultValue: string;
     };
     adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
-    textSearching: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         indexingAttributes: {
             type: string;
             description: string;
@@ -43,9 +43,9 @@ declare const configSchema: (pluginManager: PluginManager) => import("node_modul
             defaultValue: string[];
         };
         textSearchAdapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     displays: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
-    formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         feature: {
             type: string;
             description: string;
@@ -68,8 +68,8 @@ declare const configSchema: (pluginManager: PluginManager) => import("node_modul
             defaultValue: number;
             description: string;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         config: {
             type: string;
             description: string;
@@ -80,6 +80,6 @@ declare const configSchema: (pluginManager: PluginManager) => import("node_modul
             type: string;
             defaultValue: boolean;
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
 export default configSchema;

package/esm/LinearVariantDisplay/configSchema.d.ts

@@ -1,8 +1,8 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
 import type { Instance } from '@jbrowse/mobx-state-tree';
-export default function configSchemaF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
         description: string;
@@ -29,6 +29,6 @@ export default function configSchemaF(pluginManager: PluginManager): import("nod
         description: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
 export type LinearVariantDisplayConfigModel = ReturnType<typeof configSchemaF>;
 export type LinearVariantDisplayConfig = Instance<LinearVariantDisplayConfigModel>;

package/esm/LinearVariantDisplay/model.d.ts

@@ -34,6 +34,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 statusMessage?: string;
                 reactElement?: React.ReactElement;
                 isRenderingPending?: boolean;
+                displayHeight?: number;
             };
         }) => import("react/jsx-runtime").JSX.Element;
         renderProps: any;
@@ -52,10 +53,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         beforeDestroy(): void;
     } & {
         readonly statusMessage: any;
+        readonly displayHeight: number | undefined;
     } & {
         afterAttach(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxFeatureScreenDensity: {
             type: string;
             description: string;
@@ -82,7 +84,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             description: string;
             defaultValue: never[];
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
 } & {
@@ -385,6 +387,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -403,6 +406,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -429,6 +433,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -447,6 +452,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -460,7 +466,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         [x: string]: any;
                     } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
                 } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -487,7 +493,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
             showLegend: boolean | undefined;
             showTooltips: boolean | undefined;
         } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -777,6 +783,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                         statusMessage?: string;
                         reactElement?: React.ReactElement;
                         isRenderingPending?: boolean;
+                        displayHeight?: number;
                     };
                 }) => import("react/jsx-runtime").JSX.Element;
                 renderProps: any;
@@ -795,10 +802,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 beforeDestroy(): void;
             } & {
                 readonly statusMessage: any;
+                readonly displayHeight: number | undefined;
             } & {
                 afterAttach(): void;
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-            configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 maxFeatureScreenDensity: {
                     type: string;
                     description: string;
@@ -825,7 +833,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                     description: string;
                     defaultValue: never[];
                 };
-            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
             showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
         }, {
@@ -1290,6 +1298,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
                 statusMessage?: string;
                 reactElement?: React.ReactElement;
                 isRenderingPending?: boolean;
+                displayHeight?: number;
             };
         }) => import("react/jsx-runtime").JSX.Element;
         renderProps: any;
@@ -1308,10 +1317,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         beforeDestroy(): void;
     } & {
         readonly statusMessage: any;
+        readonly displayHeight: number | undefined;
     } & {
         afterAttach(): void;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
-    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         maxFeatureScreenDensity: {
             type: string;
             description: string;
@@ -1338,7 +1348,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             description: string;
             defaultValue: never[];
         };
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
     showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
     showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
 } & {

package/esm/MultiLinearVariantDisplay/configSchema.d.ts

@@ -1,18 +1,18 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-export default function VariantConfigFactory(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+export default function VariantConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     defaultRendering: {
         type: string;
         model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         defaultValue: string;
     };
-    renderers: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         MultiVariantRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     height: {
         type: string;
         defaultValue: number;
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     showReferenceAlleles: {
         type: string;
         defaultValue: boolean;
@@ -38,7 +38,7 @@ export default function VariantConfigFactory(pluginManager: PluginManager): impo
         type: string;
         defaultValue: string;
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
         description: string;
@@ -65,4 +65,4 @@ export default function VariantConfigFactory(pluginManager: PluginManager): impo
         description: string;
         defaultValue: never[];
     };
-}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;